Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007374.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq197579 437 1e-119 seq215665 77.0 4e-11 >seq197579 Length=1067 Score = 437 bits (484), Expect = 1e-119 Identities = 589/803 (73%), Gaps = 18/803 (2%) Strand=Plus/Plus Query 656 TACCAGAATGTGGGAACCTATGTTTCCGTAGCCACATCAACATTGTACA-AAAGGTCAAT 714 ||||| |||| | ||||||||| |||| |||||| || ||| |||| |||| Sbjct 269 TACCAAAATGCAGATGCCTATGTTTTTGTAGGGTCATCAAAATATAACAGAAAGTTCAAG 328 Query 715 CCCAGAAATAGCAGCAAGGCCTAAAGTGAATGGACTAGGACGTAGAATGGAATTCTCTTG 774 || ||||||||||||||| || || |||| || | || | | || ||| | | | || Sbjct 329 CC-AGAAATAGCAGCAAGACCCAAGGTGAGAGGTCAAGCAGGGAGGATGAACTATTACTG 387 Query 775 GACCCTCTTGGATATGTGG-GACACCATAAATTTTGAGAGCA-CTGGTAATCTAGTTGCA 832 ||| || | || | ||| ||||| |||| ||||| |||| |||| |||||||| | | Sbjct 388 GACACTAATAGA-ACCTGGAGACACAATAACATTTGA-AGCAACTGGAAATCTAGTGGTA 445 Query 833 CCAGAGTATGGGTTCAAAATATCGAAAAGAGGTAGT---TCAGGGATCATGAAGACAGAA 889 ||| |||| ||| ||| ||| |||||| | || || || || | | || Sbjct 446 CCAAGATATGCTTTCGCAAT---GAATAGAGGTTCTGGATCTGGTATTATAATTTCGGAT 502 Query 890 GGAACACTTGAGAACTGTGAAACCAAATGCCAAACTCCTTTGGGAGCAATAAATACAACA 949 | | || || | | ||| | || || || ||||| || ||| || ||||| || | Sbjct 503 GCACCAGTTCATGATTGTAACACGAAGTGTCAAACACCCAAGGGTGCCATAAACACCAGC 562 Query 950 CTACCTTTTCACAATGTCCACCCACTGACAATAGGTGAATGCCCCAAATATGT-AAAATC 1008 || || ||||| ||| | || ||| | ||||| || ||||| || |||||||| |||| | Sbjct 563 CTCCCATTTCAGAATATACATCCAGTCACAATTGGAGAATGTCCAAAATATGTCAAAAGC 622 Query 1009 GGAGAAATTGGTCTTAGCAACAGGACTAAGGAATGTTCCCCAGATTGAATCAAGAGGATT 1068 | |||||| | || ||||||||||||||| | || ||| |||| ||||| | Sbjct 623 ACA-AAATTGAGAATGGCTACAGGACTAAGGAATATCCCGTCTATTCAATCTAGAGGTCT 681 Query 1069 GTTTGGGGCAATAGCTGGTTTTATAGAAGGAGGATGGCAAGGAATGGTTGATGGTTGGTA 1128 |||||| || || ||||||||||| || || |||||| ||||||| | ||||| ||||| Sbjct 682 GTTTGGAGCCATTGCTGGTTTTATTGAGGGGGGATGGACAGGAATGATAGATGGATGGTA 741 Query 1129 TGGATACCATCA-CAGCAATGACCAGGGATCAGGGTATGCAGCAGA-CAAAGAATCCACT 1186 ||| || || || ||| ||||| ||||||||||| |||||||| || ||||| | ||| Sbjct 742 TGGTTATCACCATCAG-AATGAACAGGGATCAGGATATGCAGCGGACCAAAGGA-GCACA 799 Query 1187 CAAAAGGCATTTAATGGAATCACCAACAAGGTAAATTCTGTGATTGAAAAGATGAACACC 1246 ||||| || || | || ||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 800 CAAAATGCCATTGACGGGATCACTAACAAAGTAAATTCTGTTATTGAAAAGATGAACACG 859 Query 1247 CAATTTGAAGCTGTTGGGAAAGAATTCAGTAACTTAGAGAAAAGACTGGAGAACTTGAAC 1306 ||||| || || || |||||||||| |||| || |||||| | ||||| || ||| Sbjct 860 CAATTCACGGCAGTGGGTAAAGAATTCAACCACTTGGAAAAAAGAATAGAGAATTTAAAC 919 Query 1307 AAAAAGATGGAAGACGGGTTTCTAGATGTGTGGACATACAATGCAGAGCTTCTAGTTCTG 1366 |||||| | || || || ||||| ||| | ||||||||||||||||| || | ||||| Sbjct 920 AAAAAGGTTGATGATGGTTTTCTGGATATTTGGACATACAATGCAGAACTGTTGGTTCTA 979 Query 1367 ATGGAAAATGAGAGGACACTTGACTTTCATGATTCTAATGTCAAGAATCTGTATGATAAA 1426 |||||||||| || || || || || || || || ||||| ||||| |||||||| ||| Sbjct 980 TTGGAAAATGAAAGAACTCTGGATTTCCACGACTCGAATGTAAAGAACCTGTATGAGAAA 1039 Query 1427 GTCAGAATGCAGCTGAGAGACAA 1449 || |||| ||||| || |||| Sbjct 1040 GTAAGAAGCCAGCTAAGGAACAA 1062 >seq215665 Length=1765 Score = 77.0 bits (84), Expect = 4e-11 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1022 TTAGCAACAGGACTAAGGAATGTTCCCCAGATTGAATCAAGAGGATTGTTTGGGGCAATA 1081 || ||||||||| | | ||||| || ||| || | ||||| | ||||| |||||| Sbjct 740 TTGGCAACAGGAATGCGAAATGTACCAGAGAAACAAACTAGAGGCATATTTGGCGCAATA 681 Query 1082 GCTGGTTTTATAGAAGGAGGATGGCAAGGAATGGTTGATGGTTGGTATGG 1131 || ||||| |||||| || ||| | |||||||| ||||||||||| || Sbjct 680 GCGGGTTTCATAGAAAATGGTTGGGAGGGAATGGTGGATGGTTGGTACGG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5551073603470