Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007375.1 Length=2341 Score E Sequences producing significant alignments: (Bits) Value seq205407 2581 0.0 >seq205407 Length=1958 Score = 2581 bits (2862), Expect = 0.0 Identities = 1747/1958 (89%), Gaps = 0/1958 (0%) Strand=Plus/Plus Query 383 ACAAACTGACCCAAGGTCGTCAGACCTATGACTGGACATTGAACAGAAATCAGCCGGCTG 442 ||||||| ||||||||||| || || ||||| |||||||| ||||||||||| ||||| | Sbjct 1 ACAAACTAACCCAAGGTCGCCAAACTTATGATTGGACATTAAACAGAAATCAACCGGCAG 60 Query 443 CAACTGCGCTAGCCAACACTATAGAGGTCTTCAGATCGAATGGACTGACAGCTAATGAGT 502 ||||||| |||||||||| ||||| ||||| |||||||| ||| | ||||||||||| | Sbjct 61 CAACTGCATTAGCCAACACCATAGAAGTCTTTAGATCGAACGGATTAACAGCTAATGAAT 120 Query 503 CGGGAAGGCTAATAGATTTCCTCAAGGATGTGATAGAATCAATGGATAAAGAGGAGATGG 562 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 121 CAGGAAGGCTAATAGATTTCCTCAAGGATGTGATGGAATCAATGGATAAAGAGGAAATGG 180 Query 563 AAATAACAACACACTTCCAAAGAAAAAGAAGAGTAAGAGACAACATGACCAAGAAAATGG 622 | |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| Sbjct 181 AGATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGGGACAACATGACCAAGAAAATGG 240 Query 623 TCACACAACGAACAATAGGAAAGAAGAAGCAAAGATTGAACAAGAGAAGCTATCTGATAA 682 |||||||| |||||||||| ||||| ||||||||| |||| |||||| |||| || |||| Sbjct 241 TCACACAAAGAACAATAGGGAAGAAAAAGCAAAGAGTGAATAAGAGAGGCTACCTAATAA 300 Query 683 GAGCACTGACATTGAACACAATGACTAAAGATGCAGAGAGAGGTAAATTAAAAAGAAGAG 742 |||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||| | Sbjct 301 GAGCTTTGACATTGAACACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGG 360 Query 743 CAATTGCAACACCCGGTATGCAGATCAGAGGGTTCGTGCACTTTGTCGAAACACTAGCGA 802 | |||||||||||||| ||||| || |||||||||||| |||| || ||||| |||| | Sbjct 361 CTATTGCAACACCCGGGATGCAAATTAGAGGGTTCGTGTACTTCGTTGAAACTTTAGCTA 420 Query 803 GAAATATTTGTGAGAAACTTGAACAGTCTGGGCTTCCGGTTGGAGGTAATGAAAAGAAGG 862 ||| ||||| || || |||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 421 GAAGCATTTGCGAAAAGCTTGAACAATCTGGACTTCCGGTTGGGGGTAATGAAAAGAAGG 480 Query 863 CTAAACTAGCAAATGTTGTTAGAAAAATGATGACTAATTCACAAGACACAGAGCTCTCTT 922 | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 481 CCAAACTGGCAAATGTTGTGAGAAAAATGATGACTAATTCACAAGACACAGAGCTTTCTT 540 Query 923 TCACAATTACTGGAGACAACACCAAATGGAATGAGAATCAAAATCCTCGAGTGTTTCTGG 982 ||||||| ||||| |||||||| || |||||||| |||||||| || ||| ||||| ||| Sbjct 541 TCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAACCCCCGAATGTTTTTGG 600 Query 983 CGATGATAACATACATCACAAGAAATCAACCTGAATGGTTTAGAAACGTCCTGAGCATTG 1042 ||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||| | Sbjct 601 CGATGATTACATACATCACAAAGAATCAACCTGAATGGTTCAGAAACATCCTGAGCATCG 660 Query 1043 CACCCATAATGTTCTCAAATAAAATGGCTAGACTAGGGAAAGGTTACATGTTCGAAAGCA 1102 |||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||| || | Sbjct 661 CACCAATAATGTTCTCAAACAAAATGGCAAGACTGGGAAAAGGATACATGTTCGAGAGTA 720 Query 1103 AGAGCATGAAGCTCCGAACACAAATACCAGCAGAAATGCTAGCAAGTATTGACCTGAAAT 1162 |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 721 AGAGAATGAAGCTCCGGACACAAATACCTGCAGAAATGCTAGCAAGCATTGACCTGAAGT 780 Query 1163 ACTTTAATGAATCAACCAGAAAGAAAATTGAGAAAATAAGGCCTCTCCTAATAGATGGCA 1222 | || ||||||||||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct 781 ATTTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCA 840 Query 1223 CAGTCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTCTTAG 1282 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 841 CAGCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAG 900 Query 1283 GAGTCTCAATCCTGAATCTCGGGCAAAAGAAATACACCAAAACNACATACTGGTGGGACG 1342 ||||||| || |||||||| || ||||||||||||||||| || |||||||||||||| | Sbjct 901 GAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAACATACTGGTGGGATG 960 Query 1343 GACTCCAATCCTCTGATGACTTCGCTCTCATAGTGAATGCACCAAATCATGAGGGAATAC 1402 | ||||||||||| || || || || |||||||||||||||||||||||||||||||||| Sbjct 961 GGCTCCAATCCTCAGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATAC 1020 Query 1403 AAGCAGGGGTGAATAGATTCTACAGAACCTGCAAGCTAGTCGGAATCAATATGAGCAAAA 1462 ||||||| ||| ||||||||||||| ||||||||| |||| |||||||| |||||||||| Sbjct 1021 AAGCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAA 1080 Query 1463 AGAAGTCCTACATAAATAGGACAGGGACATTTGAATTCACAAGCTTTTTCTATCGCTATG 1522 |||||||||| ||||||| |||||||||||||||||||| |||||||| ||||| |||| Sbjct 1081 AGAAGTCCTATATAAATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATG 1140 Query 1523 GATTTGTAGCCAATTTTAGCATGGAGCTGCCCAGCTTTGGAGTGTCTGGAATTAATGAAT 1582 ||||||| || |||||||||||||||||||| || ||||||||||||||||| || || | Sbjct 1141 GATTTGTGGCTAATTTTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGT 1200 Query 1583 CGGCTGATATGAGCATTGGGGTAACAGTGATAAAGAACAATATGATAAATAATGACCTTG 1642 | ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 1201 CAGCTGACATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTG 1260 Query 1643 GGCCAGCAACAGCCCAAATGGCTCTTCAACTATTCATCAAAGACTACAGATACACGTACC 1702 | ||||||||||||||||||||||| ||| | ||||||||||| ||||||||||| || | Sbjct 1261 GACCAGCAACAGCCCAAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATC 1320 Query 1703 GGTGCCACAGAGGGGACACACAAATTCAGACAAGGAGATCATTCGAGCTAAAGAAGCTGT 1762 ||||||| ||||| ||||||||||| || || || |||||||||||| |||||||||||| Sbjct 1321 GGTGCCATAGAGGAGACACACAAATCCAAACGAGAAGATCATTCGAGATAAAGAAGCTGT 1380 Query 1763 GGGAGCAAACCCGCTCAAAGGCAGGACTTTTGGTGTCGGATGGAGGATCAAACTTATACA 1822 |||| ||||||| |||| | ||||||| ||||| || ||||| ||| |||||||||||| Sbjct 1381 GGGATCAAACCCAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACA 1440 Query 1823 ATATCCGGAATCTCCACATTCCAGAAGTCTGCTTGAAATGGGAGCTAATGGATGAAGACT 1882 ||||||||||||| ||||| || ||||||||||| || |||||||| |||||||| | | Sbjct 1441 ATATCCGGAATCTTCACATCCCTGAAGTCTGCTTAAAGTGGGAGCTGATGGATGAGAATT 1500 Query 1883 ATCAGGGGAGGCTTTGTAATCCCCTGAATCCATTTGTCAGTCATAAGGAAATTGAGTCTG 1942 ||| ||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 1501 ATCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAAATTGAGTCTG 1560 Query 1943 TAAACAATGCTGTGGTAATGCCAGCTCACGGTCCAGCCAAGAGCATGGAATATGATGCTG 2002 ||||||||||||| ||||||||||| || ||||| ||||| || |||||||||||||| | Sbjct 1561 TAAACAATGCTGTAGTAATGCCAGCCCATGGTCCGGCCAAAAGTATGGAATATGATGCCG 1620 Query 2003 TTGCTACTACACACTCCTGGACCCCTAAGAGGAACCGCTCCATTCTCAACACAAGCCAAA 2062 |||| |||||||||||||||| || || ||||||||||| ||||| ||||||||||||| Sbjct 1621 TTGCAACTACACACTCCTGGATTCCCAAAAGGAACCGCTCTATTCTAAACACAAGCCAAA 1680 Query 2063 GGGGAATTCTTGAAGATGAACAGATGTATCAGAAGTGTTGCAATCTATTTGAGAAATTCT 2122 ||||||||||||| |||||||||||||| |||||||| ||||| | || |||||||| | Sbjct 1681 GGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACTTGTTCGAGAAATTTT 1740 Query 2123 TCCCTAGCAGTTCGTACAGGAGACCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTGT 2182 ||||||| ||||| || |||||||| |||||||||| |||||||||||||||||||||| Sbjct 1741 TCCCTAGTAGTTCATATAGGAGACCGATTGGAATTTCTAGCATGGTGGAGGCCATGGTGT 1800 Query 2183 CTAGGGCTCGGATTGATGCACGGATTGACTTCGAGTCTGGACGGATTAAGAAAGAGGAGT 2242 ||||||| ||||||||||| | |||||||||||||||||| |||||||||| || |||| Sbjct 1801 CTAGGGCCCGGATTGATGCCAGAATTGACTTCGAGTCTGGAAGGATTAAGAAGGAAGAGT 1860 Query 2243 TCGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAAATAGTGAA 2302 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1861 TCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAATGAA 1920 Query 2303 TTTAGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTAC 2340 |||||||||||||||||||||||||||||||||||||| Sbjct 1921 TTTAGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTAC 1958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7364190226110