Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007376.1 Length=2233 Score E Sequences producing significant alignments: (Bits) Value seq208890 3241 0.0 >seq208890 Length=2206 Score = 3241 bits (3594), Expect = 0.0 Identities = 2042/2205 (93%), Gaps = 0/2205 (0%) Strand=Plus/Minus Query 1 AGCAAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2205 AGCAAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAACCCGATG 2146 Query 61 ATTGTCGAACTTGCGGAAAAGGCAATGAAAGAGTATGGAGAAGATCTGAAAATCGAAACA 120 |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| ||||| Sbjct 2145 ATTGTCGAACTTGCAGAAAAAGCAATGAAAGAGTATGGGGAGGATCTGAAAATTGAAACC 2086 Query 121 AACAAATTTGCAGCAATATGCACTCACTTGGAAGTATGCTTCATGTATTCAGATTTTCAT 180 |||||||||||||||||||| ||||||||||| || || ||||||||||||||||| ||| Sbjct 2085 AACAAATTTGCAGCAATATGTACTCACTTGGAGGTGTGTTTCATGTATTCAGATTTCCAT 2026 Query 181 TTCATCAATGAGCAAGGCGAGTCAATAATGGTAGAGCTTGATGATCCAAATGCACTTTTG 240 ||||||||||| |||||||| |||||| ||||||| ||||| |||||||||||||| | Sbjct 2025 TTCATCAATGAACAAGGCGAATCAATAGTGGTAGAACTTGACGATCCAAATGCACTGCTA 1966 Query 241 AAGCACAGATTTGAAATAATAGAGGGAAGAGATCGCACAATGGCCTGGACAGTAGTAAAC 300 |||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||| Sbjct 1965 AAGCACAGATTTGAAATAATCGAGGGGAGAGACAGAACAATGGCCTGGACAGTAGTAAAC 1906 Query 301 AGTATTTGCAACACCACAGGAGCTGAGAAACCGAAGTTTCTGCCAGATTTGTATGATTAC 360 ||||| |||||||| || ||||||| |||||||||||||| || ||||||||||||||| Sbjct 1905 AGTATCTGCAACACTACTGGAGCTGGAAAACCGAAGTTTCTACCGGATTTGTATGATTAC 1846 Query 361 AAGGAGAATAGATTCATCGAGATTGGAGTGACAAGGAGAGAAGTCCACATATACTATCTT 420 || ||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 1845 AAAGAGAACAGATTCATCGAAATTGGAGTGACAAGGAGAGAAGTCCACATATATTACCTT 1786 Query 421 GAAAAGGCCAATAAAATTAAATCTGAGAATACACACATCCACATTTTCTCATTCACTGGG 480 |||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||| Sbjct 1785 GAAAAGGCCAATAAGATTAAATCTGAGAACACACACATTCACATTTTTTCATTCACTGGG 1726 Query 481 GAAGAAATGGCCACAAAGGCCGACTACACTCTCGATGAGGAAAGCAGGGCTAGGATCAAA 540 || ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 1725 GAGGAAATGGCCACAAAGGCAGACTACACTCTCGACGAGGAAAGCAGGGCTAGGATTAAA 1666 Query 541 ACCAGACTATTCACCATAAGACAAGAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGT 600 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1665 ACCAGGCTGTTTACCATAAGACAAGAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGT 1606 Query 601 CAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGGACAATGCGC 660 |||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| Sbjct 1605 CAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAAATTTGAAATCACAGGAACTATGCGC 1546 Query 661 AGGCTTGCCGACCAAAGTCTCCCGCCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTAT 720 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1545 AGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTAT 1486 Query 721 GTGGATGGATTCGAACCGAACGGCTACATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAA 780 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1485 GTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAA 1426 Query 781 GTAAATGCAAAAATTGAACCTTTTCTGAAAACAACACCAAGACCAATTAGACTTCCGGAT 840 || ||||| ||||||||||||||||||| ||||||||||||||||| | |||||| || Sbjct 1425 GTGAATGCCCAAATTGAACCTTTTCTGAAGACAACACCAAGACCAATCAAACTTCCTAAT 1366 Query 841 GGGCCTCCTTGTTTTCAGCGGTCCAAATTCCTGCTGATGGATGCTTTAAAATTAAGCATT 900 || |||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1365 GGACCTCCTTGTTATCAGCGGTCCAAATTCCTCCTGATGGATGCTTTGAAATTGAGCATT 1306 Query 901 GAGGACCCAAGTCACGAAGGGGAGGGAATACCACTATATGATGCGATCAAGTGCATGAGA 960 || ||||||||||||||||| || || || ||| |||||||||||||||||||||| | | Sbjct 1305 GAAGACCCAAGTCACGAAGGAGAAGGGATCCCATTATATGATGCGATCAAGTGCATAAAA 1246 Query 961 ACATTCTTTGGATGGAAAGAACCCTATATTGTTAAACCACACGAAAAGGGAATAAATCCA 1020 ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| || Sbjct 1245 ACATTCTTTGGATGGAAAGAACCTTATATAGTCAAACCACACGAAAAGGGAATAAATTCA 1186 Query 1021 AATTATCTGCTGTCATGGAAGCAAGTACTGGCGGAACTGCAGGACATTGAGAATGAGGAG 1080 ||||| |||||||||||||||||||||||| | ||| ||||||||||||| ||||||||| Sbjct 1185 AATTACCTGCTGTCATGGAAGCAAGTACTGTCAGAATTGCAGGACATTGAAAATGAGGAG 1126 Query 1081 AAGATTCCAAGAACTAAAAACATGAAGAAAACGAGTCAGCTAAAGTGGGCACTTGGTGAG 1140 |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct 1125 AAGATTCCAAGAACTAAAAACATGAAGAAAACGAGTCAACTGAAGTGGGCTCTTGGTGAA 1066 Query 1141 AACATGGCACCAGAGAAGGTAGACTTTGACAACTGTAGAGACATAAGCGATTTGAAGCAA 1200 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1065 AACATGGCACCAGAGAAGGTAGACTTTGAAAACTGCAGAGACATAAGCGATTTGAAGCAA 1006 Query 1201 TATGATAGTGACGAACCTGAATTAAGGTCACTTTCAAGCTGGATCCAGAATGAGTTCAAC 1260 ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1005 TATGATAGTGAAGAACCTGAATTAAGGTCACTTTCAAGCTGGATACAGAGTGAGTTCAAC 946 Query 1261 AAGGCATGCGAGCTGACCGATTCAATCTGGATAGAGCTCGATGAGATTGGAGAAGACGTG 1320 ||||| || ||||| || |||||| ||||||||||||||||||| |||||||| ||||| Sbjct 945 AAGGCCTGTGAGCTAACTGATTCAGTCTGGATAGAGCTCGATGAAATTGGAGAGGACGTA 886 Query 1321 GCTCCAATTGAACACATTGCAAGCATGAGAAGGAATTACTTCACAGCAGAGGTGTCCCAT 1380 || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 885 GCCCCAATTGAGCACATTGCAAGCATGAGAAGGAATTATTTCACAGCAGAGGTGTCCCAT 826 Query 1381 TGCAGAGCCACAGAATATATAATGAAGGGGGTATACATTAATACTGCCTTGCTTAATGCA 1440 || ||||| || ||||| ||||||||||||||||||||||| |||||| |||| |||||| Sbjct 825 TGTAGAGCTACTGAATACATAATGAAGGGGGTATACATTAACACTGCCCTGCTCAATGCA 766 Query 1441 TCCTGTGCAGCAATGGACGATTTCCAACTAATTCCCATGATAAGCAAGTGTAGAACTAAA 1500 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 765 TCCTGTGCAGCAATGGACGATTTTCAACTAATTCCCATGATAAGCAAGTGCAGAACTAAA 706 Query 1501 GAGGGAAGGCGAAAGACCAATTTATATGGTTTCATCATAAAAGGAAGATCTCACTTAAGG 1560 |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 705 GAGGGAAGGCGAAAAACCAATTTATATGGATTCATCATAAAGGGAAGATCTCATTTGAGG 646 Query 1561 AATGACACCGACGTGGTAAACTTTGTGAGCATGGAGTTTTCTCTCACTGACCCGAGACTT 1620 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 645 AATGACACAGACGTGGTAAATTTTGTGAGCATGGAGTTTTCTCTCACAGACCCGAGACTT 586 Query 1621 GAGCCACACAAATGGGAGAAGTACTGTGTCCTTGAGATAGGAGATATGCTACTAAGAAGT 1680 || ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 585 GAACCACATAAATGGGAGAAATACTGTGTCCTTGAGATAGGAGATATGTTACTAAGAAGT 526 Query 1681 GCCATAGGCCAGATGTCAAGGCCTATGTTCTTGTATGTGAGGACAAATGGAACATCAAAG 1740 ||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 525 GCCATAGGCCAAATTTCAAGGCCGATGTTCTTGTATGTGAGGACAAACGGAACATCAAAG 466 Query 1741 ATTAAAATGAAATGGGGAATGGAGATGAGGCCTTGCCTCCTTCAGTCACTACAACAAATC 1800 | |||||||||||||||||||||||||| | |||||||||||||||||| || || ||| Sbjct 465 GTCAAAATGAAATGGGGAATGGAGATGAGACGTTGCCTCCTTCAGTCACTCCAGCAGATC 406 Query 1801 GAGAGTATGGTTGAAGCCGAGTCCTCTGTCAAAGAGAAAGACATGACCAAAGAGTTTTTT 1860 ||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 405 GAGAGCATGATTGAAGCCGAGTCCTCAGTTAAAGAGAAAGACATGACCAAAGAGTTTTTT 346 Query 1861 GAGAATAAATCAGAAACATGGCCCATTGGGGAGTCCCCCAAAGGAGTGGAAGAAGGTTCC 1920 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 345 GAGAATAAATCAGAAGCATGGCCCATTGGGGAGTCCCCCAAGGGAGTGGAAGAAGGTTCC 286 Query 1921 ATTGGGAAGGTCTGCAGGACTTTATTAGCCAAGTCGGTATTCAATAGCCTGTATGCATCC 1980 |||||||| ||||| |||||| |||| || ||||| ||||||||||||||||||||||| Sbjct 285 ATTGGGAAAGTCTGTAGGACTCTATTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCA 226 Query 1981 CCACAATTAGAAGGATTTTCAGCTGAATCAAGAAAACTGCTTCTTGTCGTTCAGGCTCTT 2040 |||||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||| Sbjct 225 CCACAATTGGAAGGATTTTCAGCGGAGTCAAGAAAACTGCTCCTTGTTGTTCAGGCTCTT 166 Query 2041 AGGGACAATCTTGAACCTGGAACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAG 2100 |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 165 AGGGACAACCTCGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAG 106 Query 2101 TGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCGTCTTGGTTCAACTCCTTCCTAACA 2160 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 105 TGCCTGATTAATGATCCCTGGGTTTTGCTCAATGCGTCTTGGTTCAACTCCTTCCTGACA 46 Query 2161 CATGCATTAAGATAGTTGTGGCAATGCTACTATTTGCTATCCATA 2205 |||||||||| |||||| ||||| |||||||||||| ||||| || Sbjct 45 CATGCATTAAAATAGTTATGGCAGTGCTACTATTTGTTATCCGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7019442699270