Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007377.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value seq197496 1436 0.0 >seq197496 Length=1027 Score = 1436 bits (1592), Expect = 0.0 Identities = 934/1026 (91%), Gaps = 0/1026 (0%) Strand=Plus/Minus Query 1 AGCAAAAGCAGGTAGATATTGAAAGATGAGCCTTCTAACCGAGGTCGAAACGTACGTTCT 60 ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| Sbjct 1026 AGCAAAAGCAGGTAGATGTTTAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCT 967 Query 61 CTCTATCGTCCCGTCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTCTT 120 ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 966 CTCTATCGTTCCGTCAGGCCCCCTCAAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTT 907 Query 121 TGCTGGGAAGAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCCT 180 ||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 906 TGCAGGGAAAAACACCGATCTTGAGGCACTCATGGAATGGCTAAAGACAAGACCAATCCT 847 Query 181 GTCACCTCTGACTAAGGGGATTTTGGGATTTGTATTCACGCTCACCGTGCCAAGTGAGCG 240 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 846 GTCACCTCTGACTAAGGGGATTTTAGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCG 787 Query 241 AGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTCAATGGGAATGGGGATCCAAATAA 300 ||||||||||||||||||||||||||| ||||||||||||||||| || || || || || Sbjct 786 AGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTCAATGGGAACGGTGACCCGAACAA 727 Query 301 CATGGACAGAGCAGTTAAACTGTATAGAAAGCTTAAGAGGGAGATAACATTCCATGGGGC 360 |||||||| ||| || |||||||| ||||| || || ||||| ||||||||||| ||||| Sbjct 726 CATGGACAAAGCGGTCAAACTGTACAGAAAACTCAAAAGGGAAATAACATTCCACGGGGC 667 Query 361 CAAAGAAGTAGCGCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 CAAAGAAGTAGCGCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATA 607 Query 421 CAACAGGATGGGGGCTGTGACCACTGAAGTGGCCTTTGCCGTGGTATGTGCAACCTGTGA 480 |||||| |||||| |||| |||||||| ||||| |||| | ||||| ||||||||||| Sbjct 606 CAACAGAATGGGGACTGTCACCACTGAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGA 547 Query 481 ACAGATTGCTGACTCCCAGCATAGGTCTCACAGGCAAATGGTGACAACAACCAATCCACT 540 |||||||||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 546 ACAGATTGCTGATTCCCAGCATCGATCTCATAGACAAATGGTGACAACAACCAATCCACT 487 Query 541 AATAAGACATGAGAACAGAATGGTTCTGGCCAGCACTACAGCTAAGGCTATGGAGCAAAT 600 ||| || ||||||||||||||||| | |||||||| || ||||| || ||||| ||||| Sbjct 486 AATCAGGCATGAGAACAGAATGGTATTAGCCAGCACAACGGCTAAAGCCATGGAACAAAT 427 Query 601 GGCTGGATCGAGTGAGCAAGCAGCAGAGGCCATGGAGGTTGCTAGTCAGGCCAGGCAAAT 660 ||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||| Sbjct 426 GGCTGGATCAAGTGAACAAGCAGCAGAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAAT 367 Query 661 GGTGCAGGCAATGAGAGCCATTGGGACTCCTCCTAGCTCCAGTGCTGGTCTAAAAGATGA 720 ||| |||||||||||| | |||||||||| ||||| ||||||||||||||||||||||| Sbjct 366 GGTACAGGCAATGAGAACAATTGGGACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGA 307 Query 721 TCTTCTTGAAAATTTGCAGGCCTATCAGAAACGAATGGGGGTGCAGATGCAACGATTCAA 780 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 306 TCTTCTTGAAAATTTACAGGCCTATCAGAAGCGAATGGGGGTGCAGATGCAACGATTCAA 247 Query 781 GTGACCCCCTTGTTGTTGCTGCGAGTATCATTGGGATCTTGCACTTTATATTGTGGATTC 840 |||| || || |||| ||| || || ||||||||||| |||||| | ||||||||||||| Sbjct 246 GTGATCCTCTCGTTGCTGCCGCAAGCATCATTGGGATTTTGCACCTGATATTGTGGATTC 187 Query 841 TTGATCGTCtttttttCAAATGCATTTATCGCTTCTTTAAACACGGTCTGAAAAGAGGGC 900 |||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||| Sbjct 186 TTGATCGTCTTTTTTTCAAATGCATTTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGC 127 Query 901 CTTCTACGGAAGGAGTACCTGAGTCTATGAGGGAAGAATATCGAAAGGAACAGCAGAGTG 960 |||||||||||||||| || ||||||||||||||||||||||| || |||||||||||| Sbjct 126 CTTCTACGGAAGGAGTGCCGGAGTCTATGAGGGAAGAATATCGGCAGAAACAGCAGAGTG 67 Query 961 CTGTGGATGCTGACGATAGTCATTTTGTCAGCATAGAGCTGGAGTAAAAAACTACCTTGT 1020 ||||||||| ||||||| |||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 66 CTGTGGATGTTGACGATGGTCATTTTGTCAACATAGTGCTAGAGTAAAAAACTACCTTGT 7 Query 1021 TTCTAC 1026 |||||| Sbjct 6 TTCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3173184851690