Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007381.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value seq209859 1442 0.0 >seq209859 Length=1262 Score = 1442 bits (1598), Expect = 0.0 Identities = 1077/1262 (85%), Gaps = 0/1262 (0%) Strand=Plus/Plus Query 155 ATGAGGGGCGACTGATCCAGAACAGCTTAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 214 ||||||| |||||||| || || ||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGGGACGACTGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 60 Query 215 ACGAGAGAAGGAATAAATATCTGGAAGAACATCCCAGCGCGGGGAAGGATCCTAAGAAAA 274 ||||||||||||||||||| || ||||| |||||||| || ||||| ||||||||||||| Sbjct 61 ACGAGAGAAGGAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAA 120 Query 275 CTGGAGGACCCATATACAAGAGAGTAGATGGAAAGTGGATGAGGGAACTCGTCCTTTATG 334 |||||||||||||||| || ||| |||| ||||| ||||||||||||||| ||||||||| Sbjct 121 CTGGAGGACCCATATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATG 180 Query 335 ACAAAGAAGAAATAAGGCGAATCTGGCGCCAAGCCAATAATGGTGATGATGCAACAGCTG 394 ||||||||||||||||| || | |||||||||||||| |||||||| ||||||||||| | Sbjct 181 ACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCG 240 Query 395 GGCTGACTCACATGATGATCTGGCATTCCAATTTGAATGATACAACATACCAGAGGACAA 454 | || || || || ||||| ||||| |||||| |||||||| | || || ||||| |||| Sbjct 241 GCCTTACCCATATTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAA 300 Query 455 GAGCTCTTGTTCGCACCGGAATGGATCCCAGGATGTGCTCTTTGATGCAGGGTTCGACTC 514 |||||||||||||||| || ||||||||||| |||||||| | ||||| ||||| || | Sbjct 301 GAGCTCTTGTTCGCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACAC 360 Query 515 TCCCTAGGAGGTCTGGAGCTGCAGGCGCTGCAGTCAAAGGAGTTGGGACAATGGTGATGG 574 | || || ||||||||||| ||||| |||||||| ||||||||||| ||||| | ||||| Sbjct 361 TTCCCAGAAGGTCTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGG 420 Query 575 AGTTGATCAGGATGATCAAACGTGGGATCAATGATCGGAACTTCTGGAGAGGTGAGAATG 634 |||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||| |||| Sbjct 421 AGTTAATCAGAATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATG 480 Query 635 GACGGAAAACAAGGAGTGCTTACGAGAGAATGTGCAACATTCTCAAAGGAAAATTTCAAA 694 |||| | ||||||| ||| || || ||||||||||||||||||||||| |||||||| | Sbjct 481 GACGAAGGACAAGGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGA 540 Query 695 CAGCTGCACAAAGAGCAATGATGGATCAAGTGAGAGAAAGCCGGAACCCAGGAAATGCTG 754 |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 541 CAGCTGCACAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTG 600 Query 755 AGATCGAAGATCTAATCTTTCTGGCACGGTCTGCACTCATATTGAGAGGGTCAGTTGCTC 814 | || |||||||| || || ||||||||||| |||||||| || |||||||||||||| | Sbjct 601 AAATTGAAGATCTTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCAC 660 Query 815 ACAAATCTTGTCTGCCCGCCTGTGTGTATGGACCTGCCATAGCCAGTGGGTACAACTTCG 874 | || ||||| ||||| || ||||||||||| | ||| |||| |||||| | |||| | Sbjct 661 ATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTG 720 Query 875 AAAAAGAGGGATACTCTCTAGTGGGAATAGACCCTTTCAAACTGCTTCAAAACAGCCAAG 934 ||| ||| ||||| ||||| || || |||||||| |||||||| ||||||||||| |||| Sbjct 721 AAAGAGAAGGATATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAG 780 Query 935 TATACAGCCTAATCAGACCGAACGAGAATCCAGCACACAAGAGTCAGCTGGTGTGGATGG 994 ||| ||||||||||||||| || || || ||||| ||||||||||| ||||||||||||| Sbjct 781 TATTCAGCCTAATCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGG 840 Query 995 CATGCAATTCTGCTGCATTTGAAGATCTAAGAGTATTAAGCTTCATCAGAGGGACCAAAG 1054 | ||| | ||||| |||||||| ||| ||||||||| | ||||||| ||||||| |||| Sbjct 841 CTTGCCACTCTGCCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAG 900 Query 1055 TATCCCCAAGGGGGAAACTTTCCACTAGAGGAGTACAAATTGCTTCAAATGAAAACATGG 1114 | ||||| || | |||||||| ||||| || || |||||||||||||| || ||| Sbjct 901 TGGTTCCAAGAGGAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGG 960 Query 1115 ATACTATGGAATCAAGTACTCTTGAACTAAGAAGCAGGTACTGGGCCATAAGGACCAGAA 1174 | ||||||| || ||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 961 AAGCTATGGACTCTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAA 1020 Query 1175 GTGGAGGAAACACTAATCAACAGAGGGCCTCTGCAGGTCAAATCAGTGTACAACCTGCAT 1234 | || ||||| || |||||||||| ||| || ||||| || |||||||| |||||| ||| Sbjct 1021 GCGGGGGAAATACCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACAT 1080 Query 1235 TTTCTGTGCAAAGAAACCTCCCATTTGACAAACCAACCATCATGGCAGCATTCACTGGGA 1294 | || || ||||| || ||||| ||||| | | | ||| | |||||||| |||| |||| Sbjct 1081 TCTCAGTACAAAGGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGG 1140 Query 1295 ATACAGAGGGAAGAACATCAGACATGAGGGCAGAAATCATAAGGATGATGGAAGGTGCAA 1354 | | |||||| | |||||||| ||| | | ||||||||||||||||||||| |||||| Sbjct 1141 ACAATGAGGGACGGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAA 1200 Query 1355 AACCAGAAGAAATGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1414 | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1260 Query 1415 CG 1416 || Sbjct 1261 CG 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4670052145990