Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007652.1 Length=14071 Score E Sequences producing significant alignments: (Bits) Value seq223215 80.6 2e-11 >seq223215 Length=10160 Score = 80.6 bits (88), Expect = 2e-11 Identities = 218/311 (70%), Gaps = 36/311 (12%) Strand=Plus/Minus Query 6606 ACAACACAAGCAACTGCA-CAACTG--ACAACACCAACAGCCCCAAAAGCAAGCATAGCA 6662 |||||| |||||| ||| |||| | |||||| ||||||| ||| | ||| | |||| Sbjct 1044 ACAACAACAGCAACAGCAACAACAGCAACAACAACAACAGCAACAACAACAACAACAGCA 985 Query 6663 CCCAAGAACAGACAGGCAACAACCaaaaaaaCCGAAACGGGCACCacaacaacaagcaga 6722 | || |||| ||| ||||| | | || ||| ||| | || |||||| ||| | | Sbjct 984 AC-AACAACA-ACAA-CAACAGCAACAACAAC---AACAGCAACAACAACAGCAACAACA 931 Query 6723 gcaa-agaaaaccaacaacc-caacagagacagcaacaacaactctcaaagcaacaacag 6780 |||| || || ||||||| ||||| |||||||||||||| | ||||||||||| Sbjct 930 GCAACAGCAA--CAACAACAGCAACAACAACAGCAACAACAACA---ACAGCAACAACAG 876 Query 6781 aaacaggcaagggcaa-agaGGGGCCAACA-CAGCACACAATCA--AAGAACAGCCCGAA 6836 ||||| ||| ||| || ||||| ||||| |||| || || |||| || Sbjct 875 CAACAG-CAACAACAACAGCAACAACAACAACAGCA-ACAA-CAGCAACAACAA----AA 823 Query 6837 ACAACAGCAGGAGAAACAACTACCCCACAGTCAAGAAGAACAACCAGCAGGCCAGCCCCA 6896 ||||||||| | |||||| || || ||| | |||||| |||| |||| || Sbjct 822 ACAACAGCAACAACAACAACAAC-----AG-CAACAGCAACAAC-AGCAA--CAGCAACA 772 Query 6897 ACAACAAAAAC 6907 ||||||||||| Sbjct 771 ACAACAAAAAC 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 44788251659010