Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009019.1 Length=30286 Score E Sequences producing significant alignments: (Bits) Value seq139329 289 5e-74 seq96645 233 4e-57 >seq139329 Length=1076 Score = 289 bits (320), Expect = 5e-74 Identities = 601/879 (68%), Gaps = 18/879 (2%) Strand=Plus/Minus Query 15306 CTAAATTTTATGGTGGTTGGGACTTTATGTTAAAAACCTTATATAAG-GATGTTGAGAGT 15364 ||||||| |||||||| |||||| |||| |||| | ||| || | ||||| || | | Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTG-ATGCGCGATGTGGATAAT 1018 Query 15365 CCACATTTAATGGGTTGGGATTACCCTAAGTGTGATCGTGCTATGCCTAATATGTGTCGC 15424 ||| ||||| ||||| || || ||||| || |||||| ||||||||||| || Sbjct 1017 GGTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGA 958 Query 15425 AT---TTTAGCGTCATTGATTTTGGCACGTAAGCATAGTACTTGTTGTACTAATTCTGAT 15481 || || || ||| | || || | |||||| | | ||||||||| || |||| Sbjct 957 ATGGCTTCTGC--CATGGTATTGGGTTC-TAAGCACATTGGTTGTTGTACACATAGTGAT 901 Query 15482 AGGTTCTACCGCTTAGCCAATGAGTGTGCTCAAGTGTTAAGTGAGTATGTCCTATGCGGA 15541 |||||||| || | | ||||||| |||||||| | | ||| ||| | || | Sbjct 900 AGGTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACA 841 Query 15542 GGAGGTTATTATGTTAAACCAGGTGGTACGAGTAGTGGTGATGCAACTACTGCTTATGCC 15601 || || | |||| | ||||| |||||||| | ||||||||| | ||||| || ||||| Sbjct 840 GGTGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCT 781 Query 15602 AATAGTGTTTTTAACATATTACAAGCCACCACCGCTAATGTTAGT--GCACTTATGAGTG 15659 || | ||||||||| || ||||| | |||||||||| || |||| |||| Sbjct 780 AACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGT- 722 Query 15660 CTAATGGTAATAC-TATCATAGATCGTGAAATAAAGGATATGCAATTTGACTTGTATATC 15718 | || || || | | | | || | | | |||| || || | | ||| | Sbjct 721 -TGATTCAAACACCTGTAACA-ATGTTACAGTTAAGGCCATACAGCGCAAGATATATGAC 664 Query 15719 AATGTATATAGAAA-AGTAGTGCCTGATCCTAAATTTGTTGACAAGTACTACGCATTTCT 15777 ||| || | | || |||| ||| | ||||| | | | || | | | | Sbjct 663 AATTGTTACCGTAGTAGCAGTGTG-GATGACGACTTTGTAGTCGAATATTTTAGTTAT-T 606 Query 15778 TAATAAA-CACTTTTCTATGATGATCTTATCGGATGATGGTGTTGTGTGTTATAATAGCG 15836 ||| ||| ||||| ||||||||||| || || ||||||||||| || ||||| || | | Sbjct 605 TAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAG 546 Query 15837 ACTATGCCGCTAAAGGTTATGTCGCCTCCATCCAAAATTTTAAAGAGACGCTTTATTATC 15896 | ||||| | | |||||||| || ||| |||||| | || || ||||||| Sbjct 545 ATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATC 486 Query 15897 AAAATAATGTCTTTATGTCAGAAGCTAAGTGCTGGGTGGAAACCAATTTGGAAAAGGGTC 15956 | || ||||| |||||||| ||||||||| ||||| ||| | || | | ||| | Sbjct 485 AGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGAC 426 Query 15957 CACATGAATTTTGTTCACAGCATACGCTCTATATTAAAGATGGGGACGATGGCTACTTCT 16016 |||| |||||||||||||| || || | | ||| || || | || ||| | | Sbjct 425 CACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATT 366 Query 16017 TACCTTATCCAGACCCTTCTAGGATTTTGTCTGCCGGTTGCTTTGTTGATGATATCGTTA 16076 |||||||||||||||| ||||| |||||||| || ||| ||||||||||| || |||| Sbjct 365 TACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTA 306 Query 16077 AGACTGACGGTACTGTCATGATGGAGCGGTATGTGTCATTGGCTATAGATGCGTATCCTC 16136 |||| ||| | ||||| | || || |||||||| | || || ||||| ||||| | Sbjct 305 AGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCAC 246 Query 16137 TAACAAAGCATGATGATACTGAATATCAAAATGTATTCT 16175 | ||||| || | | ||| ||| ||||| ||||||| Sbjct 245 TCACAAAACACCCTAAACCTGCATACCAAAAAGTATTCT 207 >seq96645 Length=1578 Score = 233 bits (258), Expect = 4e-57 Identities = 1013/1577 (64%), Gaps = 45/1577 (3%) Strand=Plus/Minus Query 16322 TTACAGGCTGTAGGTTCTTGTGTTGTGTGTCACTCACAAACATCTTTGAGGTGTGGTACA 16381 || || |||| ||| |||||||| ||| |||||||| ||| | || || Sbjct 1556 TTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACTGTTTTACGTTGCGGAGAC 1497 Query 16382 TGTATACGAAGACCTTTCTTATGTTGCAAGTGTTGTTATGATCATGTAATTGCAACACCT 16441 ||| || |||||||| || |||| ||||| || || ||||| || | ||| Sbjct 1496 TGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGACCATGTCATGGGTACAAAG 1437 Query 16442 CATAAAATGGTTCTGTCAGTTTCACCTTATGTCTGTAATGCACCTGGTTGTGATGTTTCA 16501 || ||| | || |||| | |||| ||||| |||| ||||||| |||| Sbjct 1436 CACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTATAATGGTTGTACTGTTAAT 1377 Query 16502 GATGTTACTAAATTATATCTGGGAGGTATGAGTTATTATTGTAATGACCATCGCCCAGTA 16561 |||||||| ||||| | | |||||||| | | |||||||||| ||| || ||| | Sbjct 1376 GATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGTACTGAGCACAAACCACAA 1317 Query 16562 TGTAGTTTTCCTCTTTGTGCCAATGGCTTAGTCTTTGGTTTATATAAAAATATGTGCACC 16621 | || || || ||||| ||||| || |||||| | || || | || ||||| Sbjct 1316 TTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTGTACAAGAGTA-GTGCAAT 1258 Query 16622 GGTAGTTC-GTCTATTATG--GAATTTAATAGACTTGCTACTTGTGATTGGAGTGATAGC 16678 | |||| | || || || || || | ||||||| || || |||| || Sbjct 1257 TG--GTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCAGACTGGACCAATGTA 1200 Query 16679 GGTGACTACACTCTTGCTAATACAACTACAGAACCTCTTAAATTATTTGCGGCTGAGACA 16738 | || || | |||||||||| || |||| |||| ||| | || || ||||| || Sbjct 1199 GAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATTTTCGCTGCTGAAACT 1140 Query 16739 CTTAGAGCTACAGAAGAAGCTTCTAAACAGTCGTATGCTATAGCCACTATCAAAGAAA-T 16797 | | ||| | || ||| || |||| |||||| |||| ||| |||| | | Sbjct 1139 GTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCCA-TATTAAAGGAGGT 1081 Query 16798 AGTCGGTGAACGT---GAATTAATACTTGTGTGGGAGGTTGGTAAATCCAAACCACCACT 16854 ||||| || | ||| | |||| ||||| ||| ||||| ||||| Sbjct 1080 TGTCGG---ACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATTAAACCTCCACT 1024 Query 16855 CAACCGTAATTATGTTTTTACTGGTTATCATTTAACCAAGAATAGTAAAGTACAGCTCGG 16914 ||| | |||| |||||| || ||| ||| ||| |||| ||| |||| | ||| | || Sbjct 1023 TAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAAATTCAGTTAGG 964 Query 16915 TGAGTATGTCTTCGAGCGTATAGATTAT---AGTGATGCTGTCTCTTATAAAT---CTAG 16968 ||| | ||| || |||| ||| ||| |||||| |||| | |||||| |||| Sbjct 963 TGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTATAAAAGTACTAG 904 Query 16969 TACTACGTATAAGCTAGCAGTAGGAGACATCTTTGTGCTTACCTCTCATTCAGTGGCGAC 17028 ||||| |||||| ||| || || |||||| | || |||||| ||| | Sbjct 903 CACTAC---TAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAATGTGAGTCC 847 Query 17029 ATTGTCAGCGCCAACAAT--AGTGAATCAAGAGAGGTATTTAAAAATAACTGGTATATAT 17086 | | ||| |||| | ||| || ||||||| ||| | ||| | | ||| Sbjct 846 ACTTAAAGCT--AACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAAGCTCTAT 789 Query 17087 CCAACTATTACTGTGCCTGAGGAGTTTGCAAATCATGTAGTGA---ACTTTCAAAAAGCA 17143 || || ||| | | || | | | | | ||| | ||| ||| ||||| Sbjct 788 CCTACGTTTAACATAGCGGAAGCCTATACCA--CAT-TGGTGCCTTACTATCAAATGATC 732 Query 17144 GGCTTTAGTAAGTATGTT--ACCGTGCAAGGTCCTCCTGGTACAGGTAAGAGTCATTTTG 17201 || | || || || | || | |||||||||||||||| ||||| |||| || Sbjct 731 GG--TAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTG 674 Query 17202 CTATAGGGTTGGCAATATACTACCCTACAGCACGCATTGTTTATACAGCATGCTCACATG 17261 |||||| |||| | || || ||| ||| | |||||||| |||||||| ||||||| Sbjct 673 TTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATG 614 Query 17262 CGGCAGTTGATGCATTGTGTGAGAAGGCTTTTAAGTATTTGAACATTGCTAAATGTTCTC 17321 | || || ||||| || ||||| || |||| ||| | || || ||| ||||||||| Sbjct 613 CAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAA 554 Query 17322 GTATTATTCCTGCTAAAGCGCGTGTAGAGTGTTATGACAGGTTTAAAGTCAATGATACAA 17381 | || || ||| | | | || || |||||| | |||||| ||| |||| | Sbjct 553 GGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCA 494 Query 17382 ATTCTCAATATTTATTCAGTACTGTTAATGCATTACCAGAA-ATATCAGTCGATATACTG 17440 || | |||||||| || | || |||||||| || || ||| || | || || || || Sbjct 493 ATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGT-GACATTGTG 435 Query 17441 GTAGTGGATGAAGTTAGCATGTGTACTAATTATGATTTGTCAATCATAAATTCACGTGTT 17500 || ||||||||||| |||||||| || |||||| | | |||||| | | Sbjct 434 GTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAAT--AGTAGAC 377 Query 17501 AAAGCT--AAACATATAGTGTATGTAGGTGATCCTGCTCAGTTACCAGCACCACGCACTT 17558 |||| |||||||| || ||||||||||| || || | |||||||| | || | Sbjct 376 TGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCT 317 Query 17559 TG-TTGATACGAGGCACTTTGGAGCCTGAAAATTTCAATAGTGTTACTCGTTTAATGTGT 17617 || || ||| | || || | ||||||| | | |||| ||| |||| |||||| Sbjct 316 TGATTAATAAG-GGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGT 258 Query 17618 AACTTGGGACCTGACATATTTCTTAGTGTATGTTACCGGTGTCCTAAGGAAATTGTGAGC 17677 || | |||||||| ||||| | ||||||| | || || |||||||| | Sbjct 257 AAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAA 198 Query 17678 ACTGTAAGCGCATTAGTTTACAACAATAAATTGTCAGCTAAGAAAGATGCTTCTGGCCAG 17737 || || || | ||||| | |||||||| | | || || || || ||| Sbjct 197 ACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAG 138 Query 17738 TGCTTTAAGATACTATTTAAAGGCAGTGTGACGCATGATGCGAGCTCTGCCATTAATAGA 17797 ||||||||||| | | |||||| || | ||| | | |||| | || || | Sbjct 137 TGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTATAAACAAC 78 Query 17798 CCTCAATTGAATTTTGTAAAAACTTTTATAGCTGCTAACCCAAATTGGAGTAAAGCAGTA 17857 ||| | | |||| || | ||| |||| ||| |||| ||| ||||||| || Sbjct 77 AAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAGCTGTT 18 Query 17858 TTTATTTCACCTTATAA 17874 || || ||||| ||||| Sbjct 17 TTCATCTCACCCTATAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96526755471280