Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009020.1 Length=30482 Score E Sequences producing significant alignments: (Bits) Value seq139329 248 2e-61 seq96645 206 5e-49 >seq139329 Length=1076 Score = 248 bits (274), Expect = 2e-61 Identities = 596/885 (67%), Gaps = 30/885 (3%) Strand=Plus/Minus Query 15441 CTAAGTTCTATGGTGGTTGGGACTTTATGTTAAAAACCTTGTATAAG-GATGTAGATAAT 15499 |||| ||||||||||| |||||| |||| |||| | |||| || | ||||| |||||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTG-ATGCGCGATGTGGATAAT 1018 Query 15500 CCTCACTTGATGGGTTGGGATTACCCCAAGTGTGATCGCGCTATGCCTAATATGTGTAGA 15559 | |||||||| ||||| || || ||||| || || ||| ||||||||||| || Sbjct 1017 GGTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGA 958 Query 15560 ATCTTTGCATCTCTCAT---ATTAGCCCGTAAACATAGTACTTGTTGTACTAACACTGAT 15616 || || ||| ||| ||| | ||| || | | ||||||||| | | |||| Sbjct 957 ATG---GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGAT 901 Query 15617 AGATTTTACCGCTTAGCAAATGAGTGCGCTCAAGTGCTTAGTGAGTATGTCCTTTGTGGC 15676 || || || || | | ||||||| |||||||| || | ||| ||| | |||| Sbjct 900 AGGTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACA 841 Query 15677 GGTGGTTATTACGTCAAACCTGGTGGGACCAGTAGCGGCGATGCAACCACAGCTTACGCC 15736 ||||| | ||| | ||||||||||| || | ||| || || | || ||||| || || Sbjct 840 GGTGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCT 781 Query 15737 AATAGTGTTTTTAACATTCTGCAGGCGACTACCGCGAATGTTAGT--GCACTTATGGGCG 15794 || | ||||||||| | || || | | || ||||||| || |||| || | Sbjct 780 AACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTA--GGAG 723 Query 15795 CTAATGGCAACACTATTGTTGACGAGGA---AGTTAAGGATATGCAGTTTGAGCTGTATG 15851 | || ||||| ||| || | | |||||||| || ||| || | |||| Sbjct 722 TTGATTCAAACACC--TGTA-ACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATG 666 Query 15852 TAAATGTTTACAGAAAGAGCCAGCCTG-ATCCTAAATTTGTGGACAGGTATTATGCCTTT 15910 ||| |||| | | ||| || || || | ||||| | | |||| | | | Sbjct 665 ACAATTGTTACCGTAGTAGC-AGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTAT 607 Query 15911 CTGAATAAGCACTTTTCCATGATGATACTGTCTGACGATGGTGTCGTATGCTATAATAGT 15970 | | |||||||| || |||||||| ||||||| |||||||| || || || || | Sbjct 606 TTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAA 547 Query 15971 GACTATGCCACTAAAGGTTATATCGCATCCATTCAAAACTTCAAGGAGACTCTGTATTAT 16030 || ||||| | |||||| | ||| |||| || |||| ||||| |||||| Sbjct 546 GATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTAT 487 Query 16031 CAGAATAATGTCTTCATGTCAGAGGCTAAATGCTGGGTGGAAACCGATTTGAAGAAAGGT 16090 ||||| ||||| || ||||| ||||| || ||||| ||| | ||| | || || Sbjct 486 CAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGA 427 Query 16091 CCACATGAGTTTTGCTCACAGCATACACTTTTCATAAAGGATGGTGACGATGGT---TAC 16147 ||||| || ||||| ||||| | |||| || || || | || |||||| || Sbjct 426 CCACACGAATTTTGTTCACA--ACACACATTACA-AATTGTAGGACCAGATGGTGACTAT 370 Query 16148 TTCCTACCTTATCCAGACCCCTCAAGAATACTGTCTGCCGGTTGCTTCGTCGATGATATC 16207 | |||||||||||||||| || ||||| |||| || ||| || || ||||| || Sbjct 369 TATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATT 310 Query 16208 GTCAAGACTGACGGTACG--CTCATGGTTGAGAGATTCGTGTCATTGGCAATAGACGCTT 16265 || ||||| ||| ||| ||||| |||| | | ||||| | ||||| || || | Sbjct 309 GTTAAGACAGAC--AACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCAT 252 Query 16266 ATCCTCTCACGAAGCATGATGATCCTGAATACCAAAATGTATTCT 16310 |||| ||||| || || | | |||| ||||||||| ||||||| Sbjct 251 ATCCACTCACAAAACACCCTAAACCTGCATACCAAAAAGTATTCT 207 >seq96645 Length=1578 Score = 206 bits (228), Expect = 5e-49 Identities = 970/1513 (64%), Gaps = 37/1513 (2%) Strand=Plus/Minus Query 16517 TGTATACGAAGACCCTTCCTTTGCTGTAAGTGTTGTTATGACCATGTCATAGCTACACCT 16576 ||| || ||||||| |||| ||| ||||| || ||||||||||| | |||| Sbjct 1496 TGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGACCATGTCATGGGTACAAAG 1437 Query 16577 CATAAAATGGTTCTGTCTGTGTCACCTTATGTCTGTAACGCTCCAGGTTGTGACGTTGCA 16636 || ||| | || ||||| | |||| ||||| |||| | | |||||| ||| Sbjct 1436 CACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTATAATGGTTGTACTGTTAAT 1377 Query 16637 GATGTTACTAAACTGTATTTAGGCGGTATGAGCTACTTCTGTATCGACCACCGCCCTGTA 16696 |||||||| ||| ||| ||| || ||| | | ||| | |||| || ||| || | Sbjct 1376 GATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGTACTGAGCACAAACCACAA 1317 Query 16697 TGCAGTTTTCCGCTCTGTGCAAACGGCCTTGTGTTTGGTTTGTACAAGAATATGTGCACT 16756 | || ||||||||||| || || |||||||||| ||||||||| || ||||| | Sbjct 1316 TTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTGTACAAGAGTA-GTGCAAT 1258 Query 16757 -GGTAGCCCATCTGTTACGGAATTTAACAGATTAGCTACTTGTGACTGGACTGAAAGTGG 16815 ||| | |||| || || |||| | | ||| || |||||||| || || | Sbjct 1257 TGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCAGACTGGACC-AATGTAG 1199 Query 16816 TG-ACTACACGTTGGCTAATACCACTACAGAACCACTAAAATTATTTGCGGCTGAAACAC 16874 | | || | | ||||||| | || |||| | || ||| | || || |||||||| Sbjct 1198 AGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATTTTCGCTGCTGAAACTG 1139 Query 16875 TTAGAGCAACTGAAGAAGCCTCTAAACAGTCGTACGCTATTGCTACTATCAAAGAAA-TA 16933 | | ||||| || ||| | |||| || ||| ||| | ||| |||| | | Sbjct 1138 TGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCCA-TATTAAAGGAGGTT 1080 Query 16934 GTAGG---TGAGCGTGAATTGTTGCTCGTGTGGGAAGCTGGAAAAGCCAAACCACCACTC 16990 || || | || ||| | | ||| |||||| | || ||||| ||||| Sbjct 1079 GTCGGACCTAAG---GAAGTTGTACTCCAATGGGAATCCTCTAAGATTAAACCTCCACTT 1023 Query 16991 AATCGCAACTATGTTTTCACTGGTTATCATATAACCAAGAATAGTAAAGTCCAGCTCGGT 17050 || | || | ||||||||| ||| ||| |||| |||| ||| |||| | ||| | ||| Sbjct 1022 AACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAAATTCAGTTAGGT 963 Query 17051 GAGTATGTCTTCGAGCGCATAGACTAT---AGTGATGCTGTCTCCTACAA--GT-CTAGT 17104 || | ||| || |||| ||| ||| |||||| |||| | ||| || || |||| Sbjct 962 GAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTATAAAAGTACTAGC 903 Query 17105 ACTACGTATAAGCTAGCAGTCGGAGACATCTTTGTTCTTACCTCTCACTCGGTGGCCACC 17164 ||||| |||||| ||| || || ||||| | || ||||| ||| | Sbjct 902 ACTAC---TAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAATGTGAGTCCA 846 Query 17165 CTGCAGGCGCCCACAATTGTGAATCAAGAGAGGTATGTAAAAATAACTGGATTGTATCCA 17224 || | || || | || || ||||||| ||| | ||| | | ||||| Sbjct 845 CTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAAGCTCTATCCT 786 Query 17225 ACTCTTACTGTACCTGAGGAATTTGCCAATCAT--GTTGCGAATTTTCAGAAAGCAGGTT 17282 || ||| || | || | | | ||| ||| || | | | ||| | ||| Sbjct 785 ACGTTTAACATAGCGGAAGCCTATACCA--CATTGGTGCCTTACTATCAAATGATCGGTA 728 Query 17283 TTAGTAAATTTGTCACCGTTCAGGGGCCCCCTGGCACCGGCAAGAGTCATTTTGCTATTG 17342 |||||| || | || || || ||||| | || || |||| || ||| | Sbjct 727 AGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAG 668 Query 17343 GGTTAGCGATTTACTACCCAACAGCAAGAGTTGTTTACACAGCTTGCTCACACGCAGCCG 17402 | || | | || || || ||| ||| ||||||||||||| || ||||| ||||| | Sbjct 667 GTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTG 608 Query 17403 TAGATGCATTGTGTGAGAAAGCTTTTAAGTACCTGAACATTGCAAAATGTTCACGCATTA 17462 | ||||| || ||||| ||||||| ||| || | || ||| ||||||||| | || | Sbjct 607 TGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAA 548 Query 17463 TACCTGCGA-AAGCACGTGTTGAGTGCTATGACCAGTTTAAAGTTAATGAAACAAATTCT 17521 ||||| | || || | ||||| || ||| |||||| |||| | || ||| | Sbjct 547 TACCTCAAAGAATCA-GAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCA 489 Query 17522 CAGTATTTGTTCAGTACTATTAATGCCCTACCAGAAAC-GTCTGCTGATATACTGGTGGT 17580 || |||||||| | || ||||||| | || ||| | ||| ||| || |||| || Sbjct 488 CAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTG-TGACATTGTGGTTGT 430 Query 17581 GGATGAAGTTAGTATGTGCACTAATTATGATCTCTCAGTGATTAATGCACGTATTAAAGC 17640 ||||||||| ||||| || || ||||||||| || || ||| | | ||| Sbjct 429 GGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT--GAGC 372 Query 17641 T--AAACACATCGTGTATGTTGGTGATCCAGCCCAGCTGCCTGCACCACGCACCTTGCTT 17698 | ||||| || || ||||| ||||| ||| || || || ||||| | |||||| || Sbjct 371 TACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATT 312 Query 17699 ACTCGGGGCACATTGGAACCGGAAAATTTCAATAGTGTAACCCGTTTAATGTGTAACTTG 17758 | | ||| ||| | | || || | | |||| ||| || | |||||||| | Sbjct 311 AATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAAACTA 252 Query 17759 GGACCAGATATCTTTCTGAGTGTTTGCTATCGGTGTCCTGAAGAAATAGTTAACACTGTG 17818 ||||| ||| | ||| || || || | || || | ||||| ||||| || || Sbjct 251 GGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTC 192 Query 17819 AGTGCGCTCGTCTACAACAATAAGCTTGTAGCAAAGAAGCCGGCCTCAGGACAGTGTTTC 17878 ||| || || || | ||||| || || | || || | ||| ||||| || Sbjct 191 TCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAGTGCTTT 132 Query 17879 AAAAT-TCTGTATAAGGGCAGTGTTACACA-TGATGCTAGCTCCGCCATTAACAGACCTC 17936 || || | |||| |||| || ||| || | ||| ||| ||| | || |||| | Sbjct 131 AAGATGTTTGTAAAAGGCCA-AGTT-CAGATTGAATCTAACTCTTCTATAAACAACAAGC 74 Query 17937 AGCTTAACTTTGTTAAGTCTTTTATTGCTGCTAACCCTAATTGGAGTAAGGCAGTTTTTA 17996 | || | |||| ||| | ||| | || ||| || | ||| |||| || ||||| | Sbjct 73 AACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAGCTGTTTTCA 14 Query 17997 TCTCTCCTTACAA 18009 |||| || || || Sbjct 13 TCTCACCCTATAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97152226380840