Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009021.1 Length=29114 Score E Sequences producing significant alignments: (Bits) Value seq139329 210 4e-50 seq96645 138 2e-28 >seq139329 Length=1076 Score = 210 bits (232), Expect = 4e-50 Identities = 539/815 (66%), Gaps = 18/815 (2%) Strand=Plus/Minus Query 14765 TTTGATGGGTTGGGACTATCCTAAATGTGATAGAGCTATGCCTAATTTATTGCGTATA-- 14822 ||||||||| ||||||||||| || || || | ||| |||||||| | | || || Sbjct 1012 TTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATGGC 953 Query 14823 -TTTGCCAGCCTTATTTTAGCGCGTAAGCATGCGACTTGTTGCAATGCTTCAGAGAGGTT 14881 | ||||| | | || | |||||| |||||| | | || ||||| Sbjct 952 TTCTGCCA---TGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 14882 TTATCGGTTGGCTAATGAATGTGCTCAGGTTTTGAGTGAAATGGTTCTCTGTGGAGGCGG 14941 ||||| | ||||||| | ||||| || | | || | || | ||| ||| || Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 14942 TTTTTACGTGAAACCTGGTGGTACCAGTAGTGGAGATTCCACAACTGCATATGCTAATAG 15001 ||||| | |||||||||||||| | |||||| || || || || |||||||| Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 15002 TGTTTTTAATATTTGTCAAGCTGTTAGTGCTAATCTTAATACCTTTTTATCTATAGATGG 15061 | |||||| || | |||||||||| ||||||| |||| | | ||| | ||| Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTC 716 Query 15062 TAATAAGATTTACACTACTTATGTTCAGGAATTGCAGAGGCGGTTATACTTGGGTATA-- 15119 || | | ||| | | ||| ||| | ||| | | |||| || || Sbjct 715 AAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATA--TGACAATTGT 658 Query 15120 TACCGTAGTAATACTGTAGATAATGAGTTAGTTTTGGATTATTATAACTATTTGCGTAAG 15179 |||||||||| | ||| ||| | || || || | || |||| || ||||| | ||| Sbjct 657 TACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAG 598 Query 15180 CATTTTAGTATGATGATCCTTAGTGATGATGGTGTGGTCTGCTATAATGCGGACTACGCA 15239 || || ||||||||| | |||||||||||| || || || || || || || Sbjct 597 CACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCT 538 Query 15240 CAAAAAGGCTATGTTGCTGACATACAGGGCTTTAAGGAGTTGCTGTATTTTCAGAACAAT 15299 | || ||||| || ||||| | ||||||| || |||| |||||||||| Sbjct 537 GATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAAT 478 Query 15300 GTGTTTATGTCTGAATCTAAGTGTTGGGTAGAACCGGATATAACTAAAGGTCCTCATGAA 15359 |||||||||||| | ||||||||||||||||||| ||| | | | || || || ||| Sbjct 477 GTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAA 418 Query 15360 TTTTGCTCTCAACATACTATGTTGGTTGATATGA----AGGGTGAACAAGTTTACCTGCC 15415 ||||| || ||||| || | ||| || || | ||||| | ||| | || Sbjct 417 TTTTGTTCACAACACACATTACAAATTG-TAGGACCAGATGGTGACTA---TTATTTACC 362 Query 15416 ATATCCAGATCCTTCTAGAATATTGGGAGCAGGGTGCTTTGTGGATGACTTATTGAAGAC 15475 |||||||| || |||||||| ||| |||||| ||||| |||||| | | ||||| Sbjct 361 TTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGAC 302 Query 15476 TGATGGTACTCTTATGATGGAGCGGTATGTGTCACTTGCTATTGATGCCTATCCACTTAC 15535 || | | ||| | || || |||||||| || || |||||||| |||||||| || Sbjct 301 AGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCAC 242 Query 15536 GAAGCATCCCGATCCTGAGTACCAGAATGTTTTCT 15570 || || || | |||| ||||| || || |||| Sbjct 241 AAAACACCCTAAACCTGCATACCAAAAAGTATTCT 207 >seq96645 Length=1578 Score = 138 bits (152), Expect = 2e-28 Identities = 802/1262 (64%), Gaps = 33/1262 (3%) Strand=Plus/Minus Query 15729 GGTACATGTGTTGTGTGTAATTCACAAACATCATTAAGATGTGGTGGCTGCATACGTAGA 15788 |||| |||||||| ||| ||||||||| ||| | || || | ||| || | ||| Sbjct 1544 GGTATGTGTGTTGTTTGTGGTTCACAAACTGTTTTACGTTGCGGAGACTGTTTAAGAAGA 1485 Query 15789 CCCTTCCTCTGTTGTAAATGTTGTTATGACCATGTCGTGTCTACTACACACAAGTTAGTG 15848 || |||| || || || || ||||||||| || ||| | ||||| || | Sbjct 1484 CCTCTCCTATGCACGAAGTGCGCCTACGACCATGTCATGGGTACAAAGCACAAATTCATT 1425 Query 15849 TTGTCTGTTACACCATATGTTTGTAACAACCCTAGTTGTGATGTTGCAGATGTAACCCAA 15908 ||||| | ||||| ||||| |||| | | | ||||| |||| ||||| || || Sbjct 1424 ATGTCTATCACACCGTATGTGTGTAGCTATAATGGTTGTACTGTTAATGATGTTACAAAA 1365 Query 15909 TTGTATTTGGGTGGCATGTCTTATTATTGTAGAGACCATAGACCACCAATATCGTTCCCT 15968 |||| |||||| || | |||||||||| || || | ||||| | |||| ||||| Sbjct 1364 TTGTTTTTGGGAGGTCTTAACTATTATTGTACTGAGCACAAACCACAATTATCATTCCCG 1305 Query 15969 TTGTGTGCGAATGGTCAGGTGTTTGGTCTCTACAAAAATATATGTACTGGTAGTCCGGAT 16028 | ||||| |||||| | ||||||||||| ||||| | || | |||| | ||| Sbjct 1304 CTCTGTGCTAATGGTAATGTGTTTGGTCTGTACAAGAGTAGTGCAATTGGTTCTGAAGAT 1245 Query 16029 GTAGCGGACTTCAATAGTCTAGCTACTTGTGATTGGAGTAACAGTA-AAGATTATGTCTT 16087 || | || ||||| | || ||| || || |||| || ||| | |||||| | Sbjct 1244 GTTGATGATTTCAACAAACTTGCTGTTTCAGACTGGACCAA-TGTAGAGGATTATAAACT 1186 Query 16088 AGCTAATACGGCTACAGAGCGTTTAAAGCTCTTTGCCGCTGAGACATTACGTGCGACTGA 16147 ||||||| | || ||| | | || | || || ||||| || | || | || Sbjct 1185 TGCTAATAACGTTAAAGAATCTCTGAAAATTTTCGCTGCTGAAACTGTGAAAGCAAAGGA 1126 Query 16148 AGAAAATGCTAAACAAGCATATGCTTCAGCAGTTGTTAAAGAGGTCCTTAGTGATAGGGA 16207 ||| || |||| | |||||||| || | | || ||||| | | || ||| Sbjct 1125 GGAATCTGTTAAAGCTGAATATGCTTATGCCATATTAAAGGAGGTTGTCGGACCTAAGGA 1066 Query 16208 ACTTGTGCTTTCATGGGAAACTGGCAAGACCCGACCTCCCTTAAATAGGAATTATGTATT 16267 | |||| || ||||||| | |||| |||||| | || || |||| ||| || Sbjct 1065 AGTTGTACTCCAATGGGAATCCTCTAAGATTAAACCTCCACTTAACAGAAATTCTGTTTT 1006 Query 16268 CACGGGGTTTCATATTACTAAGAATAGTAAGGTGCAACTGGGTGAATACATTTTTGAAAA 16327 ||| | ||||| || | ||| ||| ||| | || | ||||||| | ||||| | Sbjct 1005 CACATGTTTTCAGATAAACAAGGATACTAAAATTCAGTTAGGTGAATTTGTGTTTGAGCA 946 Query 16328 GGGTGACTACG---GTGACGTAGTTAACTAT---CGTTCTAGTACCACTTATAAATTACA 16381 | || || | |||| ||| ||||| || |||| || ||| | || Sbjct 945 GTCAGAATATGGTAGTGATTCTGTTTACTATAAAAGTACTAGCACTACTAAGCTGGCACC 886 Query 16382 GGTTGGTGATTACTTTGTGCTTACATCACATTCGGTGCAACCACTT--AGTTCACCTACT 16439 || | ||||| |||||| | ||||| ||| ||| |||||| || | || | | Sbjct 885 GGGT-ATGATT--TTTGTGTTGACATCTCATAATGTGAGTCCACTTAAAGCTAACAT-TT 830 Query 16440 TTGTTACCTCAGGAGCGATACACTAAGTTAGTCGGTTTGTATCCAGCTATGAATGTGCCA 16499 | || | | || ||| |||| || || | | ||||| | | || | | Sbjct 829 TAGTCAAC-CAAGAGAAGTACAATACCATATCCAAGCTCTATCCTACGTTTAACATAGCG 771 Query 16500 GAGAGCTTTGCTAGTA--ACGTT-GTACATTAC---CAACGTGTTGGTATGTCGCGTTAC 16553 || ||| ||| || || || || | |||| ||| | |||| | | Sbjct 770 GA-AGC----CTA-TACCACATTGGTGCCTTACTATCAAATGATCGGTAAGCAAAAATTT 717 Query 16554 ACTACTGTACAGGGTCCACCTGGTACGGGTAAGAGCCACTTGT-CCATAGGACTTGCGCT 16612 || ||| | || ||||| ||||||| ||||| | | |||| ||||| | | | Sbjct 716 ACAACTATCCAAGGTCCTCCTGGTAGTGGTAA-ATCACATTGTGTTATAGGTTTGGGTTT 658 Query 16613 CTACTACCCGTCTGCTAAAATCGTTTACACAGCATGCAGTCATGCAGCTGTAGATGCATT 16672 || || || |||| ||| |||||||||||||| ||||||||||| ||||| || Sbjct 657 GTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTTT 598 Query 16673 GTGTGAGAAGGCGCATAAGAATTTACCTATTAATAGGTGTAGTCGTATTGTGCCAGCTAA 16732 ||||| || || ||||| || | || ||| ||| | || | || | || Sbjct 597 ATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACC-TCAAA 539 Query 16733 GGCAC-GTGTTGAGTGTTTCTCAAAGTTCAAAGTTAACGATGTGGGTGCTCAATACGTTT 16791 | | | ||||| |||| || ||| ||| || ||| ||||| | | Sbjct 538 GAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGT 479 Query 16792 TCTCTACTATAAATGCCCTACCAGAAAC-AACTGCGGACATTCTTGTTGTAGATGAGGTC 16850 | | || | ||||| | || ||| | ||||| |||||| | ||||| ||||| || Sbjct 478 TTTGCACAGTTAATGCTTTGCCTGAAGCTAACTG-TGACATTGTGGTTGTGGATGAAGTG 420 Query 16851 AGTATGTGTACTAACTATGACCTGAGTATGATTAATGCAAGGGTTCGCGCAAAACATATT 16910 |||||||| |||||||| || ||| | || ||| || | || ||||||||| Sbjct 419 TCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTGAGCTACAAACATATT 360 Query 16911 GTGTATGTAGGTGACCCTGCACAATTACCGGCGCCTAGAACTCTTCTTACGAAGGGTACG 16970 || |||||||||||||| |||| | || || |||||||| | ||| |||||||| Sbjct 359 GTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACA 300 Query 16971 CT 16972 || Sbjct 299 CT 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 92786694726360