Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009657.1 Length=28203 Score E Sequences producing significant alignments: (Bits) Value seq96645 545 4e-151 seq139329 410 2e-110 >seq96645 Length=1578 Score = 545 bits (604), Expect = 4e-151 Identities = 1083/1582 (68%), Gaps = 16/1582 (1%) Strand=Plus/Minus Query 15383 TATGAACAGTCTTCTGTATTGCAATCTGCGGGTCTATGTGTTGTCTGCTCTTCACAGACA 15442 |||||| ||||| |||| |||||| |||| ||| | |||||||| || |||||| || Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15443 GTCCTAAGATGTGGCGATTGTATACGTAGACCCATGTTGTGCACTAAGTGTGCTTATGAT 15502 || || | || || || ||| || | ||||| | | ||||| ||||| || || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15503 CATGTTGTAAGTACTAGTCATAAATTCATCCTGGCTATTACTCCTTATGTGTGCTGTTCT 15562 ||||| | |||| | || |||||||| || |||| || || |||||||| | | | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15563 TCTGGCTGTGGAGTCTCAGACGTCACCAAATTATATTTGGGTGGTCTGAGTTATTGGTGT 15622 ||| ||| || || || || ||||| | |||||| ||||| | |||| ||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15623 GTCGACCACAAGCCTAGACTTTCTTTTCCTTTGTGTTCTAGTGGTAATGTCTTTGGGCTG 15682 || ||||| || | | || || || | ||| ||| ||||||||| ||||| ||| Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15683 TATAAAAATTCAGCTACTGGTTCACCAGATGTGGATGACTTTAATACGTTAGCCACCTCT 15742 || || | | || | |||||| |||||| ||||| || || | | || || Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15743 GATTGGACAGATGTCAAAGATTATAAGTTAGCAAATGACGTTAAAGATTCTTTGCGTTTA 15802 || ||||| |||| | |||||||| | || ||| |||||||||| ||| || | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15803 TTTGCTGCTGAAACCATTAAGGCTAAGGAAGAGAGTGTTAAGTCTTCTTACGCTTGTGCC 15862 || ||||||||||| | || || ||||| || |||||| || || |||| |||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15863 ACTATTCATGAAG-TGGTGGGACCTAAAGAGCTGGTGTTAAAATGGGAGGTTGGTAAACC 15921 | |||| | | || | || |||||||| || | || | ||||||| ||| Sbjct 1094 A-TATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGAT 1036 Query 15922 ACGTCCTCCTCTAAGTCGTAATTCTGTTTTCACGTGTTATCACATAACGAAAAACACCAA 15981 ||||| || | | |||||||||||||| |||| ||| |||| || | || || Sbjct 1035 TAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAA 976 Query 15982 GTTTCAAGTTGGTGAGTTTACGTTTGAGAAATTAGATTACGACAATGACGCCGTTAGCTA 16041 |||| | ||||| ||| ||||||| | | ||| || | | ||| | ||| ||| Sbjct 975 AATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTA 916 Query 16042 CAAGTCCAC-AGCGACAACAAAGTTGGTACCCGGTATGGTATTTGTGCTCACTTCGCACA 16100 || || ||| || || ||| ||| ||| |||||| | |||||| | || || || | Sbjct 915 TAAAAGTACTAGC-ACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATA 857 Query 16101 ATGTTCAACCGTTGAGAGCACCTACAATAATTAACCAAGAACGTTATTCTACTCTGCATA 16160 |||| || | | ||| | || | |||||||| || ||| | | Sbjct 856 ATGTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCA 797 Query 16161 AGCTTAGACCAGCCTTCAACATTCATGAGGACTACTCTAATCTTATACCTTATTATCAGT 16220 |||| || | || ||||| || | ||| | | | | ||||| ||||| Sbjct 796 AGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAA 737 Query 16221 TAATAGGTAAGCAGAAGCTTACCACAATCCAAGGTCCTCCTGGTAGTGGTAAGTCTCATT 16280 | || |||||||| || |||| || |||||||||||||||||||||||||| || |||| Sbjct 736 TGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATT 677 Query 16281 GCGTTATTGGTTTGGGGCTCTATTTTCCTGGTGCCAGAATTGTTTTTACAGCTTGTTCAC 16340 | ||||| |||||||| | |||| |||| || |||||||||| ||||| ||||||| Sbjct 676 GTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCAC 617 Query 16341 ATGCTGCTGTTGATTCACTTTGTGTTAAGGCAGCC-ACAGCTTATAGCTCAGATAGATGT 16399 |||| ||||| ||| | | |||| || || || | | ||| || |||| |||| Sbjct 616 ATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTT-TAATGTTGATAAATGT 558 Query 16400 TCTCGTATTATACCTCAAAAGGCTC-GCATTGAGTGTTATGATGGATTTAAATCCAACAA 16458 || | || ||||||| |||| || | |||| |||||| || |||||| | || || Sbjct 557 TCAAGGATAATACCTC-AAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAA 499 Query 16459 CACTAGTGCGCAGTATCTATTTTCAACTGTCAATGCGTTACCAGAAGTTAATGCAGACAT 16518 || | ||| || ||| | |||| || || ||||| || || |||| ||| ||||| Sbjct 498 TACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACAT 439 Query 16519 TTGTGTTGTAGATGAGGTGTCCATGTGTACTAACTATGATTTGTCTGTTATAAACCAACG 16578 | ||||| ||||| ||||| |||||||| ||||||||| | ||||||||| | Sbjct 438 TGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAG 379 Query 16579 TGTTAATTACAGGCACATTGTATATGTTGGTGATCCTCAGCAATTACCAGCACCTAGAGT 16638 | | |||| || ||||| ||||| ||||| || || ||| | |||||||||||| Sbjct 378 ACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAAC 319 Query 16639 TATGATAACTAGAGGTGTTTTGGTGCCTGAGGATTATAACGTGGTTAC-GAGACGTATGT 16697 |||| | || ||| | ||||||||| || || || || || ||| | |||| Sbjct 318 CTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGA-GGATGT 260 Query 16698 GCGTTCTTAAACCTGATATCTTTTTGCACAAGTGTTATCGTTGTCCAGCTGAAATTGTTA 16757 | || ||||||| | ||||||||||| ||||| | || |||||||||||||||| Sbjct 259 GTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTA 200 Query 16758 ATACAGTTTCTGAGATGGTTTACGAGAACCAGTTTGTGCCCGTAAAATCTGAGAGCAAAG 16817 | ||||| |||| | ||||| ||||| | ||| | || || || ||||| ||||| Sbjct 199 AAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAG-TCAAAG 141 Query 16818 -AGTGCTTTAAGATTTATTGT-AGAGGTAATGTTCAGGTTGATAATGGTTCTAGTATTAA 16875 ||||||||||||| | |||| | ||| | |||||| |||| | ||| ||| || Sbjct 140 CAGTGCTTTAAGATGT-TTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTATAAA 82 Query 16876 CAGACGA-CAACTTGAAGTTGTTCGTATGTTTTTGGCTAAGAATCCTAAATGGGCTAAAG 16934 || || | ||||| || ||||| ||||| || | ||||| | |||| ||||| Sbjct 81 CA-ACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAG 23 Query 16935 CTGTTTTTATTTCTCCTTACAA 16956 ||||||| || || || || || Sbjct 22 CTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 410 bits (454), Expect = 2e-110 Identities = 726/1064 (68%), Gaps = 8/1064 (1%) Strand=Plus/Minus Query 14385 CTAAGTTCTATGGTGGTTGGGATAATATGCTCAAAACACTTATTAAG-GATGTTGAAAAC 14443 |||| ||||||||||| ||||| |||||||| || | |||| | | ||||| || || Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGA-ACTTGATGCGCGATGTGGATAAT 1018 Query 14444 CCCCATTTAATGGGATGGGATTATCCTAAGTGTGATAGAGCTTTGCCCAACATGATTAGA 14503 ||| ||||||||||| ||||| ||||| || | |||||||| || ||||| || Sbjct 1017 GGTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGA 958 Query 14504 ATGATTTCTGCAATGATACTTGGTTCTAAGCACGTTAACTGCTGTAGTTCTAGCGATAGG 14563 ||| |||||| ||| || | |||||||||||| || || |||| ||| |||||| Sbjct 957 ATGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGG 898 Query 14564 TACTACAGATTGTGTAACGAACTAGCACAAGTTTTAACAGAAATGGTTTATTCAAACGGT 14623 | ||| || | | ||| || |||| ||||| | ||||| | || ||| | ||| Sbjct 897 TTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGT 838 Query 14624 GGCTTTTATGTCAAACCTGGTGGTACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 14683 ||||||||| | |||||||||||||| || Sbjct 837 GGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAAC 778 Query 14684 NNNNNNNTTAACATATTTCAGGCAACTAGTGCAAATGTTAACCGCTTGTTGAGTGTTGAT 14743 ||||||| ||||| || | ||| ||||||||| | || | |||||| Sbjct 777 TCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGAT 718 Query 14744 AGTAATACATGTAACAACATAGAAGTTAAGCAATTGCAGCGTAAGTTGTATGATTGTTGT 14803 || || |||||||| | ||||||| | ||||| ||| | ||||| |||| Sbjct 717 TCAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGT 658 Query 14804 TATCG-ATCATCAAGTGTGGATCAAAGTTTTGTTGAAGAGTACTTTGGTTACCTTCGTAA 14862 || || | | || |||||||| | ||||| | || || ||| |||| | | || Sbjct 657 TACCGTAGTAGCA-GTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAA 599 Query 14863 GCACTTTTCCATGATGATACTTTCTGATGATGGTGTCGTATGTTATAATAGTGAGTATGC 14922 |||||| || |||||||| | |||||||||||||| || ||||| || | || ||||| Sbjct 598 GCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGC 539 Query 14923 AGCTTTAGGTTATGTTGCTGATCTCAATGCTTTCAAGGCTGTTTTGTATTACCAGAATAA 14982 | | | |||||||| || || | |||||| ||||| | | ||||| ||||| || Sbjct 538 TGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAA 479 Query 14983 TGTTTTTATGAGTGCATCCAAGTGTTGGATAGAACCTGATATCAACAAGGGTCCACATGA 15042 ||| |||||| | || | ||||||||| ||||||| ||| | || ||| ||||| || Sbjct 478 TGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGA 419 Query 15043 GTTTTGTTCTCAACATACAATGCAGATAGTTGATAAGGATGGTACTTATTACCTCCCTTA 15102 |||||||| ||||| ||| | || || || | |||||| ||||| | ||||| Sbjct 418 ATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTA 359 Query 15103 TCCTGATCCGTCAAGGATACTGTCTGCAGGTGTTTTTGTAGATGACATTGTAAAAACCGA 15162 ||| || || || || || |||| |||||||||||||| ||||||||||| || || || Sbjct 358 TCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGA 299 Query 15163 CCCTGTTATACTCCTTGAACGATATGTGTCTTTAGCTATAGATGCCTACCCTCTTTCCAA 15222 | ||||| | |||||||| |||||||| |||| || ||||| || || || | || Sbjct 298 CAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAA 239 Query 15223 ACACGATAATCCTGAGTACAGGCGTGTTTTCACGGTTATGTTGGATTGGGTTAAGCACTT 15282 |||| ||| |||| ||| || ||| | || | || |||||||| ||| | Sbjct 238 ACACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCT 179 Query 15283 GTACAAGACACTTAACCAAGGAGTTTTGGATTCTTTCTCTGTTACACTATTAGAGGATG- 15341 | ||||| || || || | | ||||| |||||||| || | |||||||||| Sbjct 178 ACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGG 119 Query 15342 -CAACTGCAAAGTTTTGGGATGAAAGTTTTTATGCTAGTATGTATGAACAGTCTTCTGTA 15400 ||| | || |||||| ||| || || || ||| | || || ||||| |||| Sbjct 118 TCAA--GATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTT 61 Query 15401 TTGCAATCTGCGGGTCTATGTGTTGTCTGCTCTTCACAGACAGT 15444 |||||| |||| || | |||||||| || |||||| || || Sbjct 60 TTGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 89889261523990