Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009988.1 Length=27165 Score E Sequences producing significant alignments: (Bits) Value seq96645 764 0.0 seq139329 600 2e-167 seq191992 86.0 1e-12 >seq96645 Length=1578 Score = 764 bits (846), Expect = 0.0 Identities = 1117/1576 (71%), Gaps = 4/1576 (0%) Strand=Plus/Minus Query 15179 TATGAGAAGTCTACTGTTCTTCAAGCAGCTGGTATGTGTATTGTATGTGGATCGCAAACT 15238 ||||| ||||||||||| | ||||| |||||||||||| |||| ||||| || |||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15239 GTTCTCAGATGTGGTGATTGTCTACGCCGTCCTTTGTTATGTACAAAATGTGCTTATGAC 15298 ||| | | || || || ||| || | | ||| | |||| || || || || || ||| Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15299 CATGTTGTAGGTACCACCCATAGGTTTATCTTGTCTATTACTCCCTATGTGTGTAACACA 15358 ||||| | ||||| | || | || || ||||||| || || |||||||||| | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15359 TCTGGTTGTAATGTTAATGATGTTACCAAGTTGTTTTTGGGTGGTCTTAATTATTATTGT 15418 |||||||| ||||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15419 CATGATCACAAGCCGCAGCTCTCATTCCCACTTTGTGCTAATGGTAACATTTTTGGCCTT 15478 ||| ||||| || || | |||||||| || |||||||||||||| | ||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15479 TATAAAAACTCCGCAGTTGGGTCCTTAGATGTTGAAGTTTTTAATAAACTTGCTATGTCT 15538 || || | ||| |||| || ||||||||| | ||| || ||||||||| | || Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15539 GATTGGTCCGACGTCAGTGATTATAAATTGGCCAATGATGTTAAAGAATCTTTGCGACTC 15598 || ||| || | || ||||||||| | || ||| | |||||||||||| || | | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15599 TTTGCGGCTGAAACTATTAAAGCTAGGGAGGAGAGTGTTAAGTCCTCTTATGCGTGTGCT 15658 || || ||||||||| | ||||| | |||||| |||||| | ||||| | ||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15659 ACTCTTAAGGAGATTATAGGTCCTAAAGAATTACTGTTGCAATGGGAAGTTGGGAAGGCT 15718 | | |||||| || | || ||||| ||| | | | ||||||||| ||| | Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATT 1035 Query 15719 CGTCCTCCTCTTAACAGGAATTCTGTTTTTACCTGCTTTCAAATTAGTAAGGACTCTAAG 15778 ||||| |||||||| ||||||||||| || || ||||| || | ||||| |||| Sbjct 1034 AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAA 975 Query 15779 TGGCAAGTTGGCGAGTTTACATTTGAGAAGCTCGACTATGGCTCTGACACTGTGTGTTAT 15838 || | || || ||| |||||| || || ||||| ||| |||| | ||| Sbjct 974 ATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTAT 915 Query 15839 AAGTCTAATGTCACTGCTAAGCTTGTTCCTGGCATGATCTTTGTACTTACATCTCATAAT 15898 || || | |||| ||||||| | || || ||||| ||||| | |||||||||||| Sbjct 914 AAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAAT 855 Query 15899 GTCTTATCACTCAAAGCACCTACTATTGCCAATCAAGAGCGGTATTCAACTATTTATAAG 15958 || |||| ||||| | | | | ||| |||||| ||| || || | ||| Sbjct 854 GTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAAG 795 Query 15959 TTGTATCCATCTGTGAACGTTGATGATGCGTATTCATCTTTGGTTCCGTATTACCAACTT 16018 | ||||| | | ||| | | || || ||| | | ||||| || || || ||| | Sbjct 794 CTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAATG 735 Query 16019 ATTGGCAAGCAGAAAATTACTACAATACAAGGACCTCCTGGTAGTGGCAAATCGCATTGT 16078 || || ||||| ||| |||| || || ||||| |||||||||||||| ||||| |||||| Sbjct 734 ATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGT 675 Query 16079 GTTATTGGTCTAGGTTTGTATTACCCTAGTGCACGTATTGTGTTTGCTGCTTGTTCACAC 16138 ||||| ||| | ||||||||||| ||| || | ||||| | | || |||||||| Sbjct 674 GTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACAT 615 Query 16139 GCTGCTGTTGATTCTTTATGTCACAAAGCTGCTAAAGCCTACAGTGTAGACAGATGCTCA 16198 || ||||| ||| |||||||| | |||||| | || || | ||| || | ||| ||| Sbjct 614 GCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCA 555 Query 16199 CGTATTATTCCTGCACGAGCGCGTGTTGAGTGCTATAGTGGTTTTAAACCGAATAACACC 16258 | || || ||| | || | ||||| || |||| ||||||||||| ||||| ||| Sbjct 554 AGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACC 495 Query 16259 TCAGCTCAGTACATCTTTTCAACTGTTAATGCTTTACCAGAGGTTAATGCCGACATTGTT 16318 || || || | |||| || ||||||||||| || || | ||| |||||||| Sbjct 494 AATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTG 435 Query 16319 GTCATTGACGAAGTGTCTATGTGCACTAACTATGATTTATCTATTGTTAATGCTCGTGTG 16378 || | || |||||||| ||||| || ||||||||| | | || | ||| | | || Sbjct 434 GTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTG 375 Query 16379 GCATATAAGCACATTGTCTATGTTGGTGACCCGCAGCAGTTACCTGCACCTAGAACTATG 16438 || || || ||||| ||||| |||||||| || || | || ||||||||||| || Sbjct 374 AGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTG 315 Query 16439 ATAACGCGTGGTGTGTTACAACCTGAAGATTACAATGTTGTCACCCAGCGTATGTGTGGT 16498 || | ||| | || ||||| || ||||||||||| || ||| | |||||| Sbjct 314 ATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAAA 255 Query 16499 GTAGGACCTGATGTGTTCTTGCACAAGTGTTATCGGTGCCCTGCTGAGGTTGTTAACACT 16558 ||||||||||||| || |||||||| ||||| | ||||| ||||| ||||||| || Sbjct 254 CTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACA 195 Query 16559 GTGTCTGAACTTGTTTATGAAAACAAATTCAAACCAGTGAAAGACCACAG-CAAA-CAGT 16616 || |||| ||||||||||| || ||||| ||| || || || || |||| |||| Sbjct 194 GTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAA--CCCTGAGTCAAAGCAGT 137 Query 16617 GTTTTAAGATGTTTGTTAAGGGTAATGTTCAGATTGATAATGGCTCTAGTGTTAATAAGA 16676 | |||||||||||||| || || | ||||||||||| | |||| | | || || | Sbjct 136 GCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTATAAACAACA 77 Query 16677 GGCAGCTTGAGGTGGTTAAAGCCTTTATTGCAAAGAACCCTAAATGGAGCCGCGCTGTGT 16736 ||| || ||||| || || || ||| | ||| | || || | |||| | ||||| | Sbjct 76 AGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAGCTGTTT 17 Query 16737 TTATTTCACCATATAA 16752 | || ||||| ||||| Sbjct 16 TCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 600 bits (664), Expect = 2e-167 Identities = 770/1059 (73%), Gaps = 2/1059 (0%) Strand=Plus/Minus Query 14183 AAGTTTTATGGTGGTTGGGACAATATGCTCAAGAATTTGATGAATGATGTCGACAATGGT 14242 || || |||||||| |||||||||||||| ||||| |||||| ||||| || |||||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14243 GCACTCATGGGCTGGGATTATCCTAAATGTGATAGAGCTATGCCTAGTATGATACGAATG 14302 | ||||| ||||| ||||| || || || | ||| |||||| ||||||||||||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 14303 CTTGCTGCTATGGTTCTCGGTTCAAAGCATGTTACATGTTGTACAGACAGTGATAGGTTT 14362 | |||| ||||| | ||||| ||||| || ||||||||| | ||||||||||| Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 14363 TACAGACTTTCTAATGAACTTGCACAAGTTCTTAATGAGGTTGTGCATTCAAACGGAGGT 14422 || |||| |||||||| | || ||||| || | |||||||| |||| | || || Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 14423 TTCTATGTGAAACCTGGTGGCACCACATCAGGTGATGCTACAACAGCTTATGCGAATTCT 14482 || ||| | ||||||||||| || || ||||| | ||| ||||| ||||| || || Sbjct 834 TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCA 775 Query 14483 GTCTTTAACATCTTTCAGGCGGTTAGCTCTAATATTAATAGGCTTCTTTCTGTTGATAGT 14542 | |||||||||||||| || ||| ||||| |||| | ||| | |||||| Sbjct 774 GCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTCA 715 Query 14543 AATGTGTGCAACAATTTGTATGTCAAGAAGCTTCAGCGTTCTATCTATGACAATTGTTAT 14602 || || |||||| | || ||| | ||||| || |||||||||||||| Sbjct 714 AACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTTAC 655 Query 14603 AGATCTAGCGCTGTTGATGATAATGTTGTTACAGACTTTTATAACTATCTTAAG-AAGCA 14661 | |||| ||| ||||| | |||| || | || || ||| ||||| ||||| Sbjct 654 CGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTAT-TTAAGAAAGCA 596 Query 14662 TTTTTCCATGATGATTTTGTCTGATGATGGCGTTGTTTGTTACAACAAGGAGTATGCAGC 14721 || || ||||||||||||||||||||||| || |||||||||||||| || ||||| | Sbjct 595 CTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGA 536 Query 14722 GTTGGGTTATGTTGGTGACATCTCTGCATTTAAGGCAACTTTGTACTATCAGAATAACGT 14781 | |||||||| | ||||| ||| |||||||| ||| | || |||||||| || || Sbjct 535 TCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATGT 476 Query 14782 GTTTATGAGTACAGCCAAGTGTTGGGTCGAAGAAGATTTGTCTGTTGGACCTCATGAGTT 14841 ||||||| |||||| ||||||||||| ||| |||| | ||| ||||| || || || Sbjct 475 GTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATT 416 Query 14842 TTGCTCACAACACACTATGCAAATAGTTGATTCTGATGGTGATTATTATTTGCCGTACCC 14901 ||| ||||||||||| | ||||| || | | |||||||| |||||||| || || || Sbjct 415 TTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTATCC 356 Query 14902 AGACCCTAGCCGTATTCTTAGTGCTGGTGTCTTTGTGGATGACATTGTCAAAACTGACCC 14961 |||||| | ||| | || ||||| ||||| ||||||||||| || || ||| Sbjct 355 AGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACAA 296 Query 14962 TGTTATTTTGCTTGAGCGCTATGTGTCTCTTGCTATTGATGCATACCCATTGTCTAAGCA 15021 ||||| ||||||| || |||||||| || || ||||||||||| ||| | | || || Sbjct 295 CGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAACA 236 Query 15022 TCCCAATCGTGAATATAGGAAGGTTTTCTATGTTCTTCTTGACTGGGTTAAGCATTTACA 15081 || || | || ||| || || ||||||| | |||||||||||||| || |||| Sbjct 235 CCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTACA 176 Query 15082 TAATACACTTAACCAAGGCATTCTCGAAACTTTCTCTGTTACATTACTTGATGATGTGCA 15141 || || || || || || || || | |||||||| || | | || |||| || Sbjct 175 GAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGTCA 116 Query 15142 GAGTAAGTTTTGGGATGAGGCTTTTTATGCTGGTATGTATGAGAAGTCTACTGTTCTTCA 15201 ||| |||||| ||||| || || || || | || ||||||||||||||| | || Sbjct 115 AGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTTTGCA 56 Query 15202 AGCAGCTGGTATGTGTATTGTATGTGGATCGCAAACTGT 15240 ||| ||||| |||||| |||| ||||| || |||||||| Sbjct 55 AGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGT 17 >seq191992 Length=1482 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 20237 GATGGTAATGTTATGCATGCTAACTATATATTTTGGCGCAACTCCACTATTATGACTATG 20296 ||||| ||| | |||||||| || |||||||||||| | || ||||| |||||| | || Sbjct 33 GATGGGAATATAATGCATGCCAATTATATATTTTGGAGAAATTCCACAATTATGGCATTG 92 Query 20297 TCATATAATTCAGTTCTTGATTTGTCAAAATTTAGGT---GTAAACATAAAGCAACTGTT 20353 ||| |||||||||| || ||| | ||||||| || || |||| ||| |||| Sbjct 93 TCACATAATTCAGTCCTAGATACTCCGAAATTTAAGTGTCGTTGTAATAACGCACTTGTT 152 Query 20354 ATTATTACACTTAAAGATAAAGACATTACTGATATGGTGCTTGG 20397 ||| | | ||||| | ||| | | ||||||||| |||| Sbjct 153 GTTAAT---TTAAAAGAAAGAGAATTAAATGATATGGTTGTTGG 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 86576577668920