Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_010437.1 Length=28326 Score E Sequences producing significant alignments: (Bits) Value seq96645 645 0.0 seq139329 535 8e-148 seq92323 107 3e-19 seq140054 89.7 9e-14 seq158249 80.6 5e-11 seq132367 80.6 5e-11 >seq96645 Length=1578 Score = 645 bits (714), Expect = 0.0 Identities = 1099/1583 (69%), Gaps = 18/1583 (1%) Strand=Plus/Minus Query 15781 TATGAAAAGAGTTCTGTCTTGCAGGCTTCTGGGTTATGCGTTGTTTGCGGTTCTCAAACC 15840 ||||||||| | |||||||||| ||| |||| | || |||||||| ||||| ||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15841 GTTTTGCGCTGTGGTGATTGCTTACGTAGGCCTATGTTATGCACTAAGTGTGCATATGAC 15900 ||||| || || || || || ||| | || ||| | ||||||| ||||| || || ||| Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15901 CACGTTGTTTCAACACCACACAAGTTCATTTTGTCAATTACACCTTATATGTGTAA-TAC 15959 || || | ||| ||||| |||||| |||| || ||||| ||| |||||| || Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15960 ATCTGGGTGTACTGTTAATGACGTCACTAAGTTATATTTGGGTGGCCTTAGCTACTATTG 16019 | ||| |||||||||||||| || || || || | |||||| || |||| ||| ||||| Sbjct 1394 AA-TGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTG 1336 Query 16020 CATTGATCATAAACCAACTTTAGCTTTTCCATTGTGTTCAAATGGCAACATTTTTGGCCT 16079 | ||| || |||||| ||| | || || | ||| | ||||| || | ||||| || Sbjct 1335 TACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCT 1276 Query 16080 TTACAAAAATTCAGCCACTGGTTCACCTGACGTTGAAGTTTTTAATACTTTGGCTACGTC 16139 ||||| | | || | |||||| || ||||| | ||| || | | ||| || Sbjct 1275 GTACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTC 1216 Query 16140 TGAATGGAATGATGCTAAGGATTATAGGCTTGCTAATGAGGTTAAAGACTCACTTAGGTT 16199 || |||| ||| ||||||||| ||||||||| | |||||||| || || | | Sbjct 1215 AGACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAAT 1156 Query 16200 GTTTGCTGCTGAAACTGTTAAAGCTCGTGAAGAGAGTGTTAAGTCTTCTTATGCAGCTGC 16259 || |||||||||||||| ||||| || || |||||| || ||||| ||| Sbjct 1155 TTTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGC 1096 Query 16260 TACTTTGAAAGAAGTTATTGGACCTCGTGAATCGCTTCTCAGTTGGGAAGTTGGTAAAGT 16319 | || || || ||| | |||||| ||| | ||| |||||| ||| | Sbjct 1095 CATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGAT 1036 Query 16320 AAAGCCTCCTCTCAATAGAAACTCTGTTTTTACCTGTTACCAGATCACTAAAGACTCTAA 16379 || ||||| || || ||||| |||||||| || |||| ||||| | || || |||| Sbjct 1035 TAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAA 976 Query 16380 GTTTCAGGTGGGAGAGTACACCTTTGAGAAGTTGGATTATGACAATGATACTGTTAGTTA 16439 ||||| | || || | |||||| ||| || |||| | |||| ||||| || Sbjct 975 AATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTA 916 Query 16440 TAGGTCATCTACAACTTACAAATTGGCTCCAGGGATGATTTTTGTGCTTACATCGCACAA 16499 || ||| ||| || |||| || || |||||||||||| | ||||| || || Sbjct 915 TAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAA 856 Query 16500 TGTTCCGCCATTAAGAGCGCCTACCATTGCA---AATCAGGAACGTTATGCATCCATTTA 16556 ||| ||| | | ||| || |||| | || || || || |||| | Sbjct 855 TGTGAGTCCACTTAAAGC---TAACATTTTAGTCAACCAAGAGAAGTACAATACCATATC 799 Query 16557 TAAGTTGCGTCCTGTTTTTAATATTAGTGATGATTATGCCAACTTAATTCCATATTACCA 16616 ||| | |||| ||||| || || | ||| ||| || | || || || || Sbjct 798 CAAGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCA 739 Query 16617 AATGATTGGAAAGCAGATGATTACAACTATTCAGGGACCTCCTGGTAGTGGTAAATCTCA 16676 |||||| || ||||| | |||||||||| || || |||||||||||||||||||| || Sbjct 738 AATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACA 679 Query 16677 TTGTGTCATTGGTCTTGGATTGTATTATCCCAACGCACGTATTGTCTTTACAGCTTGTTC 16736 |||||| || ||| | || ||||||||||| | || | ||||| | ||||| ||||| Sbjct 678 TTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTC 619 Query 16737 TCATGCAGCTGTGGACTCTTTATGTGTGAAAGCTAGTAAAAATTATGTTGTGGATCATTG 16796 |||||||||||||| ||||||||| |||||| || || | | ||| ||| | || Sbjct 618 ACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATG 559 Query 16797 CTCCCGTATAATACCAGCACGTGCTCGTGTTGAGTGTTATAGTGGTTTCAAAGCTAACAA 16856 || | |||||||| | | | ||||| ||||||| ||||| ||| |||| || Sbjct 558 TTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAA 499 Query 16857 CAACAGTGCACAATATATATTTTCTACTGTCAATGCATTGCCTGAGTGTAATGCTGACAT 16916 | || |||||||||| | |||| || || ||||| |||||||| ||| |||||| Sbjct 498 TACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACAT 439 Query 16917 AGTAGTGGTGGATGAAGTGTCCATGTGTACTAATTATGATTTGTCTGTTATAAACCAAAG 16976 || || |||||||||||||| |||||||| || |||||| | ||||||||| || Sbjct 438 TGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAG 379 Query 16977 GGTTTCATACAGACATATTGTATATGTTGGTGATCCACAGCAGCTGCCTGCTCCTAGAAC 17036 | |||| ||||||||| ||||| ||||| ||||| || || || || |||||||| Sbjct 378 ACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAAC 319 Query 17037 TATGAT-AACACGAGGTGTACTTGAACCTAAGGATTACAATGTAGTCACACAGCGTATGT 17095 |||| || | | ||| ||| | ||| |||| |||||||| || || ||| | |||| Sbjct 318 CTTGATTAATAAG-GGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGT 260 Query 17096 GTGCAGTAGGTCCTGATGTGTTCTTGCATAAATGTTATCGTTGTCCTGCGGAAATCGTGA 17155 || | |||| |||||||| || ||||| |||||||| | || || || ||||| || | Sbjct 259 GTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTA 200 Query 17156 ACACAGTCTCAGAGCTTGTTTATGAAAATAAGTTTAAGCCTGTTCATGATGATAGTAAGC 17215 | |||||||| | ||||||||||| ||||| ||| ||||| | ||| |||| Sbjct 199 AAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGC 140 Query 17216 AGTGTTTCAAGATCTATTGTAAGGGTTCC-GTTCAGATTGA---TAACGGGTCGAGCATT 17271 |||| || ||||| | |||||| | | ||||||||||| |||| || || Sbjct 139 AGTGCTTTAAGATGT-TTGTAAAAGGCCAAGTTCAGATTGAATCTAAC---TCTTCTATA 84 Query 17272 AACCGTCGTCAACTGGAGGTGGTGAAGATGTTCTTAGCCAAGAATCCTCGTTGGTCTAAG 17331 ||| ||||| ||||| || ||| || ||||| | ||||| | ||| ||| Sbjct 83 AACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAA 24 Query 17332 GCTGTATTCATTACCCCTTATAA 17354 ||||| ||||| | || ||||| Sbjct 23 GCTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 535 bits (592), Expect = 8e-148 Identities = 765/1078 (71%), Gaps = 6/1078 (1%) Strand=Plus/Minus Query 14783 CTAAGTTTTATGGTGGATGGGACAATATGCTTAGAAATCTAATTGATGGTGTTGACAATG 14842 |||| || |||||||| |||||||||||||| | || | || | ||| || |||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 14843 CGTGTCTTATGGGCTGGGACTATCCTAAATGTGATAGAGCTTTGCCTAATATGATTCGTA 14902 ||| | ||||| ||||||||||| || || || | ||||||||||||||||| || | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 14903 TGATATCCGCCATGATTTTGGGTTCTAAACATGAAAATTGTTGTACTAACTCTGACCGTT 14962 || || |||||| | ||||||||||| || ||||||||| | ||| | | Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 14963 ATTATAGACTATGTAATGAGTTGGCACAAGTGCTAACTGAGGTGGTCTATTCTAACGGCG 15022 ||| |||| | ||||||||| || ||||| || || ||||| || ||| || || | Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 15023 GTTTTTATTTGAAACCAGGTGGTACGACATCGGGTGATGCAACGACAGCTTATGCCAATT 15082 | |||||| | ||||| |||||||| || ||||| | || ||||| ||||| || | Sbjct 836 GCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACT 777 Query 15083 CTGTTTTTAACATCTTCCAAGCAGTCAGTGCTAACATTAATCGCATTTTGGGCGTTAATA 15142 | | |||||||||||| ||||| || |||||| |||| | || || ||| || Sbjct 776 CAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATT 717 Query 15143 GCAATACTTGCAACAATTTGACAGTTAAAGAGTTGCAACGCTCATTGTATGACAATTGTT 15202 || || || |||||| | |||||||| | | || ||| | ||||||||||||| Sbjct 716 CAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 15203 ATCGCACTAGTACTGTTGACCCTGCCTTTGTAGACACGTTTTATGGTTACCTACGCAAAC 15262 | || | ||| | ||| || | |||||||| | | || | |||| || | || | Sbjct 656 ACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGC 597 Query 15263 ATTTCTCTATGATGATTCTATCAGACGATGGTGTTGTTTGCTATAACAAGGAGTATGCAT 15322 | ||||||||||||||| | || || |||||||| ||||| || ||||| || ||||| Sbjct 596 ACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTG 537 Query 15323 CTCTTGGCTATGTTGCAGATATTGGTGCATTCAAAGCTACACTTTATTATCAAAACAATG 15382 |||||| ||||| ||||| |||||||| || || || || || |||||||| ||||||| Sbjct 536 ATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATG 477 Query 15383 TATTCATGAGTACTGCTAAGTGCTGGGTTGAAGAAGA-CTTAAGTAAAGGCCCTCATGAA 15441 | || ||| ||| |||||||| ||||| ||| ||| ||||| | || || || ||| Sbjct 476 TGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAA-TGTGGGACCACACGAA 418 Query 15442 TTTTGTTCTCAACATACATTGCAGATTGTTGATGGTGATGGCACTTACTATTTGCCTTAC 15501 |||||||| ||||| ||||| || ||||| | ||||| || ||||| ||||| Sbjct 417 TTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTAT 358 Query 15502 CCTGATCCTTCTAGGATTTTGTCTGCAGGTGTTTNNNNNNNNNNNNNNNNTAAAACTGAT 15561 || || || ||||| |||||||| |||||||||| ||| || || Sbjct 357 CCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGAC 298 Query 15562 GCTGTGATACTTCTTGAACGTTATGTTTCTTTGGCAATTGATGCTTATCCATTGTCCAAG 15621 || || | |||||||||||||| || | ||||||||||| |||||| | | || Sbjct 297 AACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Query 15622 CATCCTAATCCTGAATATAGAAAAGTGTTCTATGTTCTTTTAGATTGGGTTAAACACTTA 15681 || ||||| |||| ||| |||||| ||||||| | | || |||||||||||| || Sbjct 237 CACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTA 178 Query 15682 AATAACACCTTGAATGAAGGTGTTTTAGAATCTTTCTCAGTTACTTTGCTTGAAGAT--T 15739 | || || | |||| ||| | | || || ||||| || ||| || | || ||| | Sbjct 177 CAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGT 118 Query 15740 CCAGTTCAAAGTTCTGGGATGAAGGATTCTATGCTAGTTTATATGAAAAGAGTTCTGTCT 15799 | || | || || ||| ||| | ||||| || ||| | || || ||| | |||| | Sbjct 117 CAAGAT--AAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTT 60 Query 15800 TGCAGGCTTCTGGGTTATGCGTTGTTTGCGGTTCTCAAACCGTTTTGCGCTGTGGTGA 15857 |||| ||| |||| | || |||||||| ||||| ||||| || || || || || || Sbjct 59 TGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq92323 Length=1240 Score = 107 bits (118), Expect = 3e-19 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 24335 GCTGCACTTAATGCTTTTGTGACTCAACAGTTGTTGCGTTATTCAGAGGTTCGTGCTTCT 24394 || ||||||||||||| |||| ||||| || | ||| | || || ||| | Sbjct 1231 GCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTCAAGGCTAGT 1172 Query 24395 AGACAATTGGCTCAAGAAAAGATTAATGAGTGTGTTAAATCACAGTCTTCTAGATATGGG 24454 || ||| | || ||||| ||||||||||||| ||||||||||| ||| |||||| Sbjct 1171 AGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGATAGGTATGGG 1112 Query 24455 TTCTGTGGTAATGGAACACATGTCTTTTCTGTTGCTAATGCTGCTCCTGATGGT 24508 |||||||| ||||||||||| | || || ||| ||| |||| ||||||||| Sbjct 1111 TTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGATGGT 1058 Score = 84.2 bits (92), Expect = 4e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 24963 TTAATAATACTCTTGTTGAACTTGAGTGGCTTAACAGAGTTGAAACTTACATTAAATGGC 25022 ||||||| || |||||||| ||||| ||||| ||||| |||||||||| | ||||||| Sbjct 597 TTAATAAGACGCTTGTTGACCTTGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGC 538 Query 25023 CTTGGTATGTGTGG 25036 |||||||||| ||| Sbjct 537 CTTGGTATGTATGG 524 >seq140054 Length=1182 Score = 89.7 bits (98), Expect = 9e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 24963 TTAATAATACTCTTGTTGAACTTGAGTGGCTTAACAGAGTTGAAACTTACATTAAATGGC 25022 ||||||| ||||||||||| ||||| ||||| || || |||||||||| | ||||||| Sbjct 497 TTAATAAGACTCTTGTTGACCTTGAATGGCTCAATAGGATTGAAACTTATGTAAAATGGC 556 Query 25023 CTTGGTATGTGTGG 25036 |||||||||||||| Sbjct 557 CTTGGTATGTGTGG 570 >seq158249 Length=1012 Score = 80.6 bits (88), Expect = 5e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 24963 TTAATAATACTCTTGTTGAACTTGAGTGGCTTAACAGAGTTGAAACTTACATTAAATGGC 25022 ||||||| || |||||||| || || ||||| ||||| |||||||||| | ||||||| Sbjct 807 TTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGC 748 Query 25023 CTTGGTATGTGTGG 25036 | |||||||||||| Sbjct 747 CATGGTATGTGTGG 734 >seq132367 Length=1893 Score = 80.6 bits (88), Expect = 5e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 24963 TTAATAATACTCTTGTTGAACTTGAGTGGCTTAACAGAGTTGAAACTTACATTAAATGGC 25022 ||||||| || |||||||| || || ||||| ||||| |||||||||| | ||||||| Sbjct 625 TTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGC 684 Query 25023 CTTGGTATGTGTGG 25036 | |||||||||||| Sbjct 685 CATGGTATGTGTGG 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90281804986585