Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_010438.1 Length=28773 Score E Sequences producing significant alignments: (Bits) Value seq96645 693 0.0 seq139329 603 2e-168 seq191992 95.1 2e-15 seq132367 89.7 9e-14 seq92323 87.8 3e-13 >seq96645 Length=1578 Score = 693 bits (768), Expect = 0.0 Identities = 1109/1583 (70%), Gaps = 18/1583 (1%) Strand=Plus/Minus Query 15668 TATGAGAAGTCTGCTGTGTTACAGGCAGCTGGTCTTTGTGTTGTTTGCAATTCTCAGACT 15727 ||||| |||||| |||| || || || |||||| | ||||||||||| ||| || ||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15728 GTTCTGAGGCGCGGTGATTGCCTCCGTAGGCCTATGTTGTGCACTAAGTGCGCTTATGAC 15787 ||| | | |||| || || | | || ||| | | ||||| |||||||| || ||| Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15788 CACGTTGTAGGCACAAATCACAAGTTTATTCTTGCAATTACACCGTACGTTTGTAATGCT 15847 || || | || ||||| ||||| || ||| | | || |||||||| || |||| | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15848 GCTGGCTGTGCTGTTAATGATGTTACAAAGCTGTATTTAGGCGGTCTTAGTTATTATTGT 15907 ||| ||| ||||||||||||||||||| ||| ||| || ||||||| ||||||||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15908 GTTGATCGCAAACCACAATTGTCATTCCCACTCTGTTCGGGTGGTAATGTTTTTGGTTTG 15967 ||| | |||||||||||| |||||||| |||||| | ||||||||| |||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15968 TATAAGAACTCTGCCACTGGTTCTCCGGACGTAGAGGTCTTTAACACTCTTGCTACTTCA 16027 || |||| ||| | ||||||| || || || | || |||| |||||| |||| Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 16028 GACTGGACTGACGCTAAGGACTATCGTTTGGCTAATGAAGTCAAAGACTCCCTTAGACTC 16087 |||||||| | | |||| ||| | |||||| | || ||||| || || | | | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 16088 TTTGCCGCTGAAACCGTTAAGGCAAAGGAGGAATGTGTCACGTCGTCCTATGCAGCAGCC 16147 || || |||||||| || || ||||||||||||| ||| | | ||||| ||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 16148 ACACTTAAAGAGATTATCGGACCCAAGGA-GTTGCTACTTAGTTGGGAACCTGGAAAGAT 16206 | | | || ||| || ||||||| ||||| |||| |||| |||||| | ||||| Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTG-TACTCCAATGGGAATCCTCTAAGAT 1036 Query 16207 TAAGCCACCTCTTAATAGGAATTCTGTTTTCACCTGCTTTCAGGTGACGAAGGATTCTAA 16266 ||| || || ||||| || |||||||||||||| || |||||| | | |||||| |||| Sbjct 1035 TAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAA 976 Query 16267 GTTTCAAGTTGGTGAGTTTACTTTCGAGAAGCTTGATTATGGTTCAGATACTGTGTGTTA 16326 |||| | ||||| ||| || ||| || || |||||| ||| |||| | || Sbjct 975 AATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTA 916 Query 16327 TAAGTCAACTGCCACTTGTAAATTGCAACCTGGCATGATTTTTGTTTTGACTTCACACAA 16386 ||| ||| |||| ||| || ||| || ||||||||||| ||||| || || || Sbjct 915 TAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAA 856 Query 16387 TATCCAGCCATTAAGAGCCCCTACTATTGCAAATCAGGAGCGTTATGCTGCTATTTGCAA 16446 | | ||| | | ||| | | | | || || ||| || | | || | ||| Sbjct 855 TGTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAA 796 Query 16447 ACTTAAGCCAACATTCAATATTAGTGATGCCTATTCTACTTTGGTACCATATTACCAGAT 16506 || | || || || || || || |||||| | || ||||| || || || || || Sbjct 795 GCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAAT 736 Query 16507 GATTGGTAGGCAAAAGATTACCACCATTCAGGGTCCTCCTGGTAGTGGTAAATCACACTG 16566 ||| |||| |||||| |||| || || || |||||||||||||||||||||||||| || Sbjct 735 GATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTG 676 Query 16567 TGTTATTGGATTGGGACTTTATTACCCTGGTGCCCGTATAGTCTTTGCTGCATGTTCGCA 16626 |||||| || ||||| | ||||| ||| || | || || | | |||||||| || Sbjct 675 TGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACA 616 Query 16627 CGCTGCAGTTGATTCGCTTTGTGTG--AAGGCTAGCACGACTTATGTCGTCGAGCATTGT 16684 || || || ||| ||||| |||| || ||| || || | | || || | ||| Sbjct 615 TGCAGCTGTGGAT--GCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGT 558 Query 16685 ACTCGTATAATTCCAGCACGTGCTCGAGTTGAATGCTTCAGTGGTTTTAAGGCTAATAAT 16744 | | ||||| || | | ||||||| || | | |||||||| |||||||| Sbjct 557 TCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAAT 498 Query 16745 AATAGTGCACAGTACATCTTTTCAACTGTCAATGCACTACCTGAGTGTACCGCAGACATT 16804 | | |||||| || | |||| || || ||||| | ||||| || | |||||| Sbjct 497 ACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATT 438 Query 16805 GTTGTCATAGATGAAGTTTCTATGTGTACTAATTATGATTTGTCCATTGT--TAACCAG- 16861 || || | |||||||| || |||||||| || |||||| | || ||| ||| || Sbjct 437 GTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCT---CAGTGTTATAAATAGT 381 Query 16862 AGAGTGGCTTACAAACACATTGTCTATGTTGGTGACCCGCAACAATTGCCAGCTCCTCGC 16921 ||| || |||||||| ||||| ||||| |||||||| |||||| | ||||| ||| | Sbjct 380 AGACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGA 321 Query 16922 ACCATGATTACTCGTGGTGTGTTGGAACCTAAGGATTATAATGTTGTTACCCAACGAATG 16981 ||| |||||| | ||| | | ||| |||| || |||||||| || || | ||| Sbjct 320 ACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATG 261 Query 16982 TGTGCTGTAGGCCCTGATGTGTTCTTGCATAAATGTTACCGTTGCCCTGCAGAAATTGTA 17041 ||| |||| |||||||| || ||||| ||||||||| | ||||| || |||||||| Sbjct 260 TGTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTT 201 Query 17042 AAGACTGTTTCCGAGCTTGTTTATGAGAACAAGTTCGTACCTGTGCACTCTGAGAGTAAA 17101 || || || || | |||||||||||||| || || ||||||| || ||||| || Sbjct 200 AAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAG 141 Query 17102 CAGTGTTTCAAGATCTTTTGCAAAGGTGCAGTTCAAGTTGA---TAACGGTTCTAGTATT 17158 ||||| || ||||| ||| ||||| |||||| |||| |||| ||| ||| Sbjct 140 CAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAAC---TCTTCTATA 84 Query 17159 AACCGTAGACAACTTGAAGTTGTTAAGATGTTTTTGGCAAAGAACCCGTCATGGTCTAAG 17218 ||| | ||||| || ||||| ||| ||||| ||| | || || |||| ||| Sbjct 83 AACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAA 24 Query 17219 GCTGTTTTTATTTCGCCTTATAA 17241 |||||||| || || || ||||| Sbjct 23 GCTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 603 bits (668), Expect = 2e-168 Identities = 781/1071 (73%), Gaps = 22/1071 (2%) Strand=Plus/Minus Query 14670 CTAAGTTCTATGGCGGCTGGGACAATATGTTGCGAAATCTTATGGATGGTGTGGATAATG 14729 |||| |||||||| ||||||||||||||| | || | ||| | ||||||||||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 14730 CTTGTCTCATGGGTTGGGATTACCCTAAGTGTGATCGTGCATTGCCCAACATGATTCGTA 14789 |||| | ||||| ||||| || || ||||| || ||||| ||||| || ||||| || | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 14790 TGATTTCTGCTATGATTTTGGGTTCTAAGCATGTTAATTGTTGTACCAATTCAGATCGTT 14849 || |||||| ||| | |||||||||||||| || ||||||||| || ||| | | Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 14850 ATTATAGACTTTGTAATGAGCTTGCACAAGTTCTTACTGAAGTTGTCTATTCTAATGGTG 14909 ||| |||| | ||||||| | || ||||| || || || ||||| ||| || |||| Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 14910 GTTTCTATATGAAACCTGGTGGTACTACATCTGGTGACGCCACTACAGCCTATGCTAATT 14969 | || ||||| |||||||||||||| || |||||||| |||||||| |||||||| | Sbjct 836 GCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACT 777 Query 14970 CTGTCTTCAACATATTCCAGGCCGTTAGTGCTAATATTAACAGGATTTTGGGTATTAATA 15029 | | || ||||| || || || ||| ||||||| |||||| | | || || || || Sbjct 776 CAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATT 717 Query 15030 GTAATACCTGTAATAATCTTGCTGTTAAATCCTTACAGCGTATGCTCTATGACAATTGTT 15089 || |||||||| ||| || | ||||| || ||||||| | | | ||||||||||||| Sbjct 716 CAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 15090 A---TAGAAGTTCTGCTGTTGACCCTGGTTTTGTTG----ATACTTTTTACGGCTACTTG 15142 | ||| || || | |||| | ||||| | ||| ||||| | || || Sbjct 656 ACCGTAGTAGCAGTGTGGATGAC---GACTTTGTAGTCGAATA--TTTTA--GTTATTTA 604 Query 15143 CGGAAGCACTTCTCTATGATGATTCTGTCTGATGACGGTGTTGTCTGTTATAATAAAGAG 15202 | ||||||||||||||||||||| |||||||||| ||||| || ||||| || ||||| Sbjct 603 AGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGAT 544 Query 15203 TATGCTTCTTTGGGTTATGTAGCCGATATTAACGCATTTAAGGCCACGTTGTATTATCAG 15262 |||||| | | ||||||||||| || ||| || ||||||||||| | ||||||||| Sbjct 543 TATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAG 484 Query 15263 AACAATGTTTTTATGAGCACCTCTAAGTGTTGGGTCGAAGAAGACCTTACTAAAGGTCCT 15322 |||||||| |||||| || ||||||||||||| ||| ||| |||| | || || Sbjct 483 AACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCA 424 Query 15323 CATGAGTTTTGTTCTCAACACACTATGCAAATAGTTGATGGTGATGGTACGTATTATTTA 15382 || || |||||||| |||||||| | ||||| || | |||||| ||||||||| Sbjct 423 CACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTA 364 Query 15383 CCGTACCCAGATCCATCACGTATTTTGTCTGCTGGCGTGTTTGTAGATGATGTTATTAAG 15442 || || ||||| ||||| | |||||||| || || || ||||| ||||| || ||||| Sbjct 363 CCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAG 304 Query 15443 ACTGAC---GCTGTCGTTCTTTTGGAACGTTACGTGTCTTTGGCCATTGATGCTTATCCA 15499 || ||| | | || | ||| |||||||| ||||| | || |||||||| |||||| Sbjct 303 ACAGACAACGTTATCATGCTT---GAACGTTATGTGTCGCTAGCAATTGATGCATATCCA 247 Query 15500 CTTTCCAAGCATCCAAACCCTGAATATCGTAAAGTGTTTTATGTGTTACTCGATTGGGTT 15559 || | || || || || |||| ||| | ||||| || |||| || || || |||||| Sbjct 246 CTCACAAAACACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTT 187 Query 15560 AAACATCTTAATAACACTTTGAACCAGGGTGTGCTTGAGTCTTTCTCAGTTACGTTGCTT 15619 ||||| || | || ||| | || ||| | ||||| || ||||| || || || | Sbjct 186 AAACACCTACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTA 127 Query 15620 GAAGACGCGTC-CTCTAAGTTTTGGGATGAATCTTTCTATGCAAACTTGTATGAGAAGTC 15678 || || | ||| ||| |||||| ||| ||||| || | | || |||||||| Sbjct 126 GAGGATG-GTCAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTC 68 Query 15679 TGCTGTGTTACAGGCAGCTGGTCTTTGTGTTGTTTGCAATTCTCAGACTGT 15729 | |||| || || || ||||| | ||||||||||| ||| || ||||| Sbjct 67 TACTGTTTTGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGT 17 >seq191992 Length=1482 Score = 95.1 bits (104), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 20711 ATTGTTGATGGCAATGTTATGCATGCCAATTATATCTTTTGGCGTAATTCCACTATTATG 20770 || || ||||| ||| | ||||||||||||||||| |||||| | |||||||| |||||| Sbjct 27 ATAGTGGATGGGAATATAATGCATGCCAATTATATATTTTGGAGAAATTCCACAATTATG 86 Query 20771 GCGATGTCCTACAACAGTGTCTTAGATCTTTCTAAGTTTGAGT---GTAGGCATAAAGCA 20827 || |||| | || ||| ||||| | | || ||| ||| || | |||| ||| Sbjct 87 GCATTGTCACATAATTCAGTCCTAGATACTCCGAAATTTAAGTGTCGTTGTAATAACGCA 146 Query 20828 ACGGTGGTTATAGCTTTGAAAGATACTGATTTAAGTGAAGTTATAGTTGGTCTTATCAGG 20887 || |||| ||| ||||| | || |||| ||| | | ||||| | | ||| Sbjct 147 CTTGTTGTTA---ATTTAAAAGAAAGAGAATTAAATGATATGGTTGTTGGATTGCTAAGG 203 Query 20888 AATGGTAAGTTGCTTATTAGAAAGAATGG 20916 || ||||| | || |||||||| ||||| Sbjct 204 AAGGGTAAAATACTCATTAGAAATAATGG 232 >seq132367 Length=1893 Score = 89.7 bits (98), Expect = 9e-14 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 24241 GCTTTTGTTACTCAGACTCTTACTAAGTACACAGAAGTTCGTGCTAGCAGGTTGTTGGCG 24300 |||| ||| | || ||| | || |||| | ||||| ||||| ||| |||| Sbjct 3 GCTTATGTGTCGCAAACTTTGACCCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTGGCA 62 Query 24301 CAGGAGAAGATTAATGAGTGTGTTAAGTCACAATCCACTCGTTATGGATTTTGTGGAAAT 24360 ||| || ||||||| || || || |||||||| | | ||||| |||||||||||| Sbjct 63 ATGGAAAAAGTTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTTGTGGAAAT 122 Query 24361 GGCACTCATTTGTTCTCCATCCCTAATGCTGCACCTGAAGGTATTATGCTGTTTCATACA 24420 || || || ||||||| | ||| |||||||||| ||| | | | ||||| ||| Sbjct 123 GGAACACACCTGTTCTCACTTGTCAATTCTGCACCTGATGGTTTGCTCTTCTTTCACACA 182 Query 24421 GTTCTTGTACCCACTGAATATGTCTCAGTTACTGCCTGGTCTGG 24464 ||||| | || || |||| | ||| ||||| ||||| || Sbjct 183 GTTCTGCTTCCTACCGAATGGGAAGAAGTGACTGCATGGTCAGG 226 >seq92323 Length=1240 Score = 87.8 bits (96), Expect = 3e-13 Identities = 223/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 24238 AATGCTTTTGTTACTCAGACTCTTACTAAGTACACAGAAGTTCGTGCTAGCAGGTTGTTG 24297 ||||||| ||| |||| || | ||| |||| | ||||| ||||| ||| | Sbjct 1222 AATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTT 1163 Query 24298 GCGCAGGAGAAGATTAATGAGTGTGTTAAGTCACAATCCACTCGTTATGGATTTTGTGGA 24357 || ||| || ||||||||||||| || ||||| || | | ||||| || |||||| Sbjct 1162 GCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGATAGGTATGGGTTCTGTGGA 1103 Query 24358 AATGGCACTCATTTGTTCTCCATCCCTAATGCTGCACCTGAAGGTATTATGCTGTTTCAT 24417 ||||| || || | ||||| | ||| |||||||||| ||| | | | ||||| Sbjct 1102 AATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGATGGTCTACTTTTCTTTCAC 1043 Query 24418 ACAGTTCTTGTACCCACTGAATATGTCTCAGTTACTGCCTGGTCTGG-CTAT-TGTC-AT 24474 |||||| | | || || |||| | ||| || || ||||| || ||| |||| || Sbjct 1042 ACAGTTTTGCTTCCTACAGAATGGGAAGAAGTGACGGCATGGTCAGGAATATGTGTCAAT 983 Query 24475 AACGGTGTTGGTTATGCCGTGAAAGATGTAGGCAATTCGCTGTTTCAGTT-TAATAATAC 24533 || | || |||| ||||||| | | |||| | |||||||| |||| ||| Sbjct 982 GACACTTATGCATATGTGTTGAAAGACTTTGATCATTCTAT-TTTCAGTTATAATGGTAC 924 Query 24534 ATTTTACATCACACCTCGAAATATGTATCAGCC 24566 | | | || ||||| ||||||| ||| || Sbjct 923 GTATATGGTGACTCCTCGTAATATGTTTCAACC 891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 91698502990850