Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_010646.1 Length=31686 Score E Sequences producing significant alignments: (Bits) Value seq96645 141 2e-29 seq139329 116 7e-22 >seq96645 Length=1578 Score = 141 bits (156), Expect = 2e-29 Identities = 368/550 (67%), Gaps = 11/550 (2%) Strand=Plus/Minus Query 15982 CAAGGTCCCCCTGGCAGTGGTAAATCGCACTTTGCTATAGGTTTAGCAGCATATTTTTCA 16041 |||||||| ||||| ||||||||||| || | || ||||||||| | |||| | | Sbjct 707 CAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAGGTTTGGGTTTGTATTATCCT 648 Query 16042 AATGCTAGAATAGTTTATACAGCATGTTCTCATGCTGCAGTTGATGCTTTGTGTGCTAAG 16101 | |||||||| ||||| ||||||||||| ||||| || || |||||||| |||| || Sbjct 647 CAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTTTATGTGAAAAA 588 Query 16102 GCTTTTAAGTTTCTTAAGCACGATGATTGTACCAGAGTAGTACCTATGCGTGTAGGCGTA 16161 |||| ||| |||| ||| | ||| | || || ||||| | | | || Sbjct 587 GCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCAAAGAATCAGAGTT 528 Query 16162 GATTGCTTCTCT-GATTTTAAGGTTAATGATATGACTCGTAAGTACATTTTTTCTACGAT 16220 ||||| || | | | |||||| |||| ||| | | | || | |||| || | Sbjct 527 GATTG-TTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGTTTTGCACAGT 469 Query 16221 AAATGCACTTCCAGAAGTTAGCTGTGATATATTGCTTGTTGATGAGGTGAGCATGCTTAC 16280 ||||| | || |||| || |||||| || || |||| ||||| ||| ||| ||| Sbjct 468 TAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTGTGGATGAAGTGTCAATGTGTAC 409 Query 16281 CAATTATGAGCTTTCTTATTTGAATCAGAAGA-TTTCTTATCAATATGTTGTTTATGTAG 16339 || ||||| || | | | ||| || ||| | || || || |||||||||||| Sbjct 408 AAACTATGATCTCAGTGTTATAAAT-AGTAGACTGAGCTACAAACATATTGTTTATGTAG 350 Query 16340 GAGACCCTGCGCAATTGCCAGCACCCAGGACTCTTCTTAAT---GGTTGTTTAGAACCAG 16396 | ||||| ||| | |||||||| || || | ||||| ||| | | || | Sbjct 349 GTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACACTCCAGCCTG 290 Query 16397 CTCATTACAATTTGGTAACTAATATAATGGTTTCTACGAAG-CCCGATATATTTTTAGCA 16455 | |||||| | || ||| | | || || | || | | || ||| ||||||| ||| Sbjct 289 AGGACTACAATGTTGTGACTCAGAGGAT-GTGTAAACTAGGACCTGATGTATTTTT-GCA 232 Query 16456 -AAATGTTATCGGTGTCCAAAAGAAATTGTTGACACTGTGTCAGAGCTTGTTTATGAAGG 16514 |||||||| | || ||| ||||||||| | || || || | ||||||||||| Sbjct 231 CAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGTTTATGAGAA 172 Query 16515 CAAATTTATA 16524 |||||| || Sbjct 171 TAAATTTTTA 162 >seq139329 Length=1076 Score = 116 bits (128), Expect = 7e-22 Identities = 242/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14596 AAGCACTTTAGTCTCATGATATTGAGCGATGATGGTGTTGTGTGTTATAACAAAAGTTAT 14655 |||||||| | | ||||| ||| ||||||||||| || ||||| |||||| |||| Sbjct 600 AAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTAT 541 Query 14656 GCTGAGGCAGGTATGGTTGCCAGCATTGCTTCATTTAGAGAAGTTTTGTTTTATCAGAAT 14715 ||||| ||| || || ||||| | | |||| | | | | ||||||||| Sbjct 540 GCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAAC 481 Query 14716 AATGTGTTTATGGCCGATTCCAAATGTTGGACAGAAGAAGATGTTAAGATTGGGCCACAT 14775 |||||||||||| | | || |||||| |||| |||| |||| | || ||||| Sbjct 480 AATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACAC 421 Query 14776 GAGTTTTGTTCACAGCATTCAATGC---TAGTTGAAATAGATGGAGA-AATGAGATACTT 14831 || ||||||||||| || || | | | || | | |||||| || || || || Sbjct 420 GAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTAT----TATTT 365 Query 14832 ACCGTATCCTGATCCATCACGTATATTAGGAGCTTGTGTCTTTGTCGACGATGTTGAGAA 14891 ||| ||||| || ||||| | || || ||| |||| ||||| || || ||| || Sbjct 364 ACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAA 305 Query 14892 GACTGAACCTGTTGTAGTTATGGAGAGATATGTGGCATTAGCAATTGATGCTTACCCA 14949 ||| || ||| | | | || | |||||| | ||||||||||||| || ||| Sbjct 304 GACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCA 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100994404825280