Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_010800.1 Length=27657 Score E Sequences producing significant alignments: (Bits) Value seq96645 192 1e-44 seq139329 165 1e-36 >seq96645 Length=1578 Score = 192 bits (212), Expect = 1e-44 Identities = 411/607 (68%), Gaps = 13/607 (2%) Strand=Plus/Minus Query 15948 GGTAAACAGAAGCGTACTACAGTACAAGGCCCTCCTGGCAGTGGTAAGTCACACTTTGCT 16007 ||||| || || ||| || | ||||| |||||||| |||||||| ||||| | || | Sbjct 731 GGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTT 672 Query 16008 ATAGGCCTTGCAGCGTACTTTAGTAATGCTCGTGTTGTTTTTACTGCATGCTCTCATGCA 16067 ||||| | | ||| | | | | ||| | |||||| || ||||| || |||||| Sbjct 671 ATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCA 612 Query 16068 GCTGTTGATGCTTTATGTGAAAAAGCTTTTAAGTTTCTTAAAGTTGATGATTGCACTCGT 16127 ||||| |||||||||||||||||||||| ||| |||| |||||| | || | | Sbjct 611 GCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGG 552 Query 16128 ATAGTACCTCAAAGAACTACTATCGATTGCTTTTCAAAGTTTAAAGCTAATGATAC--AG 16185 ||| |||||||||||| | | ||||| | | |||||| ||||| |||| | Sbjct 551 ATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAAT 492 Query 16186 GCAAAAAGTACATTTTTAGTACTATAAATGCCTTGCCAGAAGTTAGTTGTGACATTCTCT 16245 ||| || || | ||| | || | ||||| ||||| |||| || ||||||||| | Sbjct 491 GCACAA--TATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGG 434 Query 16246 TGGTTGACGAGGTTAGTATGTTGACCAATTATGAATTGTCA--TTTATTAATGGTAAGAT 16303 | || || || || |||| || || ||||| | ||| |||| ||| ||| | Sbjct 433 TTGTGGATGAAGTGTCAATGTGTACAAACTATGA--TCTCAGTGTTATAAATAGTAGACT 376 Query 16304 AAACTACCAATATGTTGTGTATGTAGGTGATCCCGCTCAATTACCGGCACCTCGTACCTT 16363 | |||| || || |||| ||||||||||| || ||| | || |||||| | ||||| Sbjct 375 GAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTT 316 Query 16364 ACTTAAT---GGTTCACTTTCACCAAAGGATTATAATGTTGTAACAAACCTTATGGTTTG 16420 ||||| ||| |||| || |||| || |||||||| || | ||| | Sbjct 315 GATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAA 256 Query 16421 CGTTAAACCTGATATCTTCCTTGC-GAAGTGTTACCGTTGTCCTAAGGAAATTGTAGACA 16479 | ||||||| | || |||| || |||||| | || || |||||||| | | Sbjct 255 ACTAGGACCTGATGTATT-TTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAA 197 Query 16480 CTGTGTCTACTCTTGTTTATGATGGAAAGTTTATTGCAAACAACCCAGAATCACGCCAGT 16539 | || ||| ||||||||||||| || ||| | | |||||| || ||| |||| Sbjct 196 CAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAGT 137 Query 16540 GTTTTAA 16546 | ||||| Sbjct 136 GCTTTAA 130 >seq139329 Length=1076 Score = 165 bits (182), Expect = 1e-36 Identities = 521/790 (66%), Gaps = 28/790 (4%) Strand=Plus/Minus Query 14112 AAGTTTTATGGCGGTTGGGACAACATGTTGAGAAACCTTATTCAGGGTGTTGAAGACCCG 14171 || || ||||| || |||||||| ||| | | ||| | || | | ||| || | | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAAT--G 1017 Query 14172 ATTCTT--ATGGGTTGGGATTATCCAAAGTGTGATAGAGCAATGCCAAATTTGCTACGTA 14229 || || ||||| ||||| ||||||||||| || | || |||| ||| || |||| | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 14230 TAGCAGCATCTTTGGTACTTGCTCGGAAACACACTAACTGTTGTACTTGGTCTGAGCGTA 14289 | || | | ||||| | | | || |||| | |||||||| ||| | Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 14290 TTTATAGGTTGTATAATGAATGCGCTCAGGTTTTATCAGAAACTGT-CTTAGCTACAGGT 14348 | ||| | | | |||||| | ||||| || | |||| ||| | | | ||||||| Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTG-TACAGGT 838 Query 14349 GGTATTTATGTGAAACCTGGTGGCACTAGCAGTGGCGATGCTACTACTGCTTATGCAAAC 14408 || ||||| | ||||||||||| || | ||||| || | |||||| || ||||| ||| Sbjct 837 GGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAAC 778 Query 14409 AGCGTTTTTAACATAATACAAGCCACATCTGCAAATGTTG-CGCG-TCTTTTGAGTG--T 14464 | ||||||||| | ||||| ||||| |||||| | | |||| |||| | Sbjct 777 TCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGAT 718 Query 14465 TATAACGCGCG--ATATTGTTTATGACGACA-TTAAGAGCTTGCAGTACGAATTGTATCA 14521 | ||| | | | | |||| ||| ||||| | | ||| | | | ||| | Sbjct 717 TCAAACACCTGTAACAATGTT-------ACAGTTAAGGCCATACAGCGCAAGATATATGA 665 Query 14522 GCAGGTTTACAGGCGAGTTAATTTTGACCCAGCCTTTGTTGAAAAGTTTTATTCTTACTT 14581 | |||| | | | | | || | |||||| | | | || | ||| || Sbjct 664 CAATTGTTACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTT 605 Query 14582 ATGTAAGAATTTTTCCTTGATGATCTTGTCTGACGACGGTGTTGTTTGTTATAACAATAC 14641 | | ||| | || || ||||||| |||||||| || ||||| |||||||| ||||| | Sbjct 604 AAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAA-AG 546 Query 14642 ACTA-GCCAAGCAAGGTCTTGTAGCAGATATTTCTGGTTTTAGAGAAATTCTCTACTACC 14700 | || || | | ||| ||||||||| ||| || ||||| | | ||| || || | Sbjct 545 ATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATC 486 Query 14701 AAAATAATGTTTATATGGCTGATTCTAAGTGTTGGGTGGAACCAGATTTAGAAAAAGGCC 14760 | || ||||| | |||| || ||||||||||||| ||||||||| | | || | Sbjct 485 AGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGAC 426 Query 14761 CTCATGAATTTTGTTCACAGCATACAATGC-TAGTGGAGG--TGGATGGTGAGCCTAAAT 14817 | || |||||||||||||| || ||| | | | || ||| |||||||| || | | Sbjct 425 CACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGA--CT-ATT 369 Query 14818 ACTTGCCATACCCAGATCCTTCACGCATTTTGGGTGCATGTGTATTTGTAGATGACGTAG 14877 | || || || ||||| || || | |||||| ||| |||| ||||| |||||| | | Sbjct 368 ATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTG 309 Query 14878 ATAAGACAGA 14887 ||||||||| Sbjct 308 TTAAGACAGA 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 88146751519300