Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_011549.1 Length=26396 Score E Sequences producing significant alignments: (Bits) Value seq139329 109 9e-20 >seq139329 Length=1076 Score = 109 bits (120), Expect = 9e-20 Identities = 232/340 (68%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 13158 AAATTTTATGGTGGTTGGGACAATATGTTGCGACGTTTGATGGATGGTATTAACAATCCT 13217 ||||| |||||||| |||||||||||| | |||||| | | | | ||| | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 13218 ATTTTGGTGGGTTGGGATTACCCTAAGTGTGATCGTTCTATGCCTAACATGTTAAGAATT 13277 |||| |||| ||||| || || ||||| || ||| || ||||||| ||| || |||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 13278 GCTGCTTCTTGCTTGTTAGCACGAAAACACA---CTTGTTGTACTCAAAGTCAGCGATTT 13334 ||| || | | || | || |||| ||||||||| || ||| | | || Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 13335 TATCGTCTGGCTAATGAGTGTTGC-CAGGTACTGTCAGAAGTTGT--GGTGT-CTGGTAA 13390 ||||| || ||||||||| | || || ||||| |||| ||||| ||| | || Sbjct 894 TATCGACTCTCTAATGAGT-TAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGG--- 839 Query 13391 TAATCTATATGTTAAACCAGGTGGCACTAGCAGTGGTGATGCAACCACAGCTTATGCTAA 13450 | | ||| | ||||| ||||| || | |||||||| | || ||||| |||||||| Sbjct 838 TGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAA 779 Query 13451 TTCCGTGTTTAACATTCTACAGGTTGTATCTGCAAATGTT 13490 || | |||||||| | || | ||| ||||| |||||| Sbjct 778 CTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTT 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84122383175135