Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_011550.1 Length=26552 Score E Sequences producing significant alignments: (Bits) Value seq96645 131 3e-26 seq140054 95.1 2e-15 >seq96645 Length=1578 Score = 131 bits (144), Expect = 3e-26 Identities = 361/551 (66%), Gaps = 2/551 (0%) Strand=Plus/Minus Query 15187 TTACAACTGTCCTTGGACCACCTGGCACTGGTAAATCAACCTTTGCTATAGGTTTGGCTA 15246 |||||||| ||| || || ||||| | |||||||||| | || ||||||||||| | Sbjct 718 TTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAGGTTTGGGTT 659 Query 15247 AGTACTATCCCAATGCGCGTATTTGCTACACGGCGTCATCCCATGCAGCGATCGATGCAT 15306 ||| ||||| | || | ||| ||||| || | || |||||||| | ||||| | Sbjct 658 TGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTT 599 Query 15307 TATGTGAAAAAGCTTTCAAGACACTACCTGTAGGCCAGTGCAGTCGTATCGTCCCCACGC 15366 ||||||||||||||| ||||| | ||| | | || | || | || Sbjct 598 TATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCAAA 539 Query 15367 GTACAACTGTAGAGTGCTTTCAGGAGTTTGTCGTTAACAATACAACTGCTCAATACATTT 15426 | | | || || || | | || ||| ||| ||||| | ||| ||||| | | Sbjct 538 GAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGT 479 Query 15427 TTTCTACAATCAATGCATTGCCAGACATTAAGTGTGACATCGTTGTTGTAGATGAAGTTT 15486 ||| ||| | ||||| ||||| || ||| |||||||| || ||||| |||||||| | Sbjct 478 TTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTGTGGATGAAGTGT 419 Query 15487 CTATGCTAACCAATTATGAGCTTTCCTCTGTGAACGCTCGGTTAGTCTACACACACATTG 15546 | ||| || || ||||| || | | || | | | ||||| ||| |||| Sbjct 418 CAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTGAGCTACAAACATATTG 359 Query 15547 TGTATGTTGGTGACCCTTATCAGTTACCATCACCAAGAACTATGCTAACCTCAGGTCAAC 15606 | ||||| |||||||| | || | ||| |||| ||||| || | | ||| || Sbjct 358 TTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACAC 299 Query 15607 TGTCACCAGCTGACTATAATGTGGTTACTGATATAATGGTGCATGCT-GGCGCTGATGTA 15665 | || | ||||| ||||| || ||| | | || ||| | || || |||||||| Sbjct 298 TCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGAT-GTGTAAACTAGGACCTGATGTA 240 Query 15666 ATGCTAGACATGTGCTACCGCTGCCCACGTGAAATCGTAGATACAGTGTCTAAGCTGGTT 15725 | | ||| || ||| | |||||| |||||| || | ||||| ||| || ||| Sbjct 239 TTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGTT 180 Query 15726 TACGATAATAA 15736 || || ||||| Sbjct 179 TATGAGAATAA 169 >seq140054 Length=1182 Score = 95.1 bits (104), Expect = 2e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 22697 CTGCAACACTATATTGACAACCTTAATAACACTCTTGTAGATTTAGAGTGGCTTAATAAG 22756 || || || || ||||||||||||||||| |||||||| || | || ||||| |||| | Sbjct 475 CTACAGCAGTACATTGACAACCTTAATAAGACTCTTGTTGACCTTGAATGGCTCAATAGG 534 Query 22757 GTTGAAACATACATTAAATGGCCCTGGTGGGTGTGGCTGCTTATTGTTTTAG 22808 ||||||| || | |||||||| |||| |||||||| || |||| |||| Sbjct 535 ATTGAAACTTATGTAAAATGGCCTTGGTATGTGTGGCTACTAATTGGATTAG 586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84620243176475