Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_012936.1 Length=31250 Score E Sequences producing significant alignments: (Bits) Value seq139329 188 1e-43 seq96645 87.8 4e-13 >seq139329 Length=1076 Score = 188 bits (208), Expect = 1e-43 Identities = 521/780 (67%), Gaps = 38/780 (5%) Strand=Plus/Minus Query 15362 ATGGGTTGGGACTATCCTAAGTGTGATCGTGCTATGCCAAACATACTACGTATTGTTAGT 15421 ||||| ||||||||||| ||||| || |||||| |||| || || |||| || | | | Sbjct 1008 ATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATGGCTTCT 949 Query 15422 AGTTTGGTGTTAGCCCGTAAACATGATTCGT-GCTGTTCGCATACAGATAGATTCTATCG 15480 |||| || | ||| || ||| || | ||| | |||| ||||| |||||||| Sbjct 948 GCCATGGTATTGGGTTCTAAGCAC-ATTGGTTGTTGTACACATAGTGATAGGTTCTATCG 890 Query 15481 TCTTGCGAACGAGTGCGCCCAAGTTTTGAGTGAAATTGTTATGTGTGGTGGTTGTTATTA 15540 || | || |||| || ||||| | | || |||| ||| ||| | | ||| Sbjct 889 ACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGCTTTTA 830 Query 15541 TGTTAAACCTGGTGGCACTAGCAGTGGGGATGCAACCACTGCTTTTGCTAATTCTGTTTT 15600 | | ||||||||||| || | ||||| || | || || || | |||||| || | ||| Sbjct 829 TATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCAGCTTT 770 Query 15601 TAACATTTGTCAAGCTGTTTCCGCCAATGT----ATGCTCGCTTATGGCATG---CAA-- 15651 |||||| | |||||||||||| || ||||| | |||| ||| | || ||| Sbjct 769 TAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTC--TTAGGAGTTGATTCAAAC 712 Query 15652 ---TGGACACAAAATTGAAGATTTGAGTATACGCGAGTTGCAAAAGCGCCTATACTCTAA 15708 || | |||| || || | | |||| || |||| | |||| || Sbjct 711 ACCTGTA-ACAATGTTACAGTTAAGGCCATAC---AGC-GCAAGA-----TATATGACAA 662 Query 15709 TGTGTATCGTGCGGACCA-TGTTGACCCCGCATTTGTTAGT-GAGTATTATGAGTT-TTT 15765 | || ||| | | || ||| || || ||||| ||| || |||| | |||| ||| Sbjct 661 TTGTTACCGTA-GTAGCAGTGTGGATGACGACTTTGT-AGTCGAATATTTT-AGTTATTT 605 Query 15766 AAATAAGCATTTTAGTATGATGATTTTGAGTGATGATGGTGTTGTGTGTTATAATTCAGA 15825 || ||||| || ||||||||||||| |||||||||||| || ||||| || ||| Sbjct 604 AAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGA 545 Query 15826 GTTTGCGTCCAAGGGTTATATTGCTAATATAAGTGCCTTTCAACAGGTATTATATTATCA 15885 | ||| |||||| | || | || |||| ||| | |||||||||| Sbjct 544 TTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCA 485 Query 15886 AAATAATGTGTTTATGTCTGAGGCCAAATGTTGGGTCGAAACGGACATTGAAAAGGGACC 15945 || ||||||||||||||| || || |||||||| ||| | || || | |||||| Sbjct 484 GAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACC 425 Query 15946 GCATGAATTTTGTTCTCAACATACAATGCTAGT--TAAGA-TGGATGGTGATGAAGTTTA 16002 || ||||||||||| ||||| ||| | | | | || || |||||||| | ||| Sbjct 424 ACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTA---TTA 368 Query 16003 CCTTCCATATCCTGATCCTTCGAGAATCTTAGGAGCAGGCTGTTTTGTTGATGATTTATT 16062 | || ||||| || || || ||||| || |||||| |||||||||||| | | Sbjct 367 TTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGT 308 Query 16063 AAAGACTGATAGCGTTCTCTTGATAGAGCGCTTTGTAAGTCTTGCAATTGATGCTTATCC 16122 ||||| || | |||| || || | || || | ||| || ||||||||||| ||||| Sbjct 307 TAAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCC 248 >seq96645 Length=1578 Score = 87.8 bits (96), Expect = 4e-13 Identities = 242/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 16328 TGCGTTGTCTGTAGTTCTCAAACATCATTACGTTGTGGTAGTTGCATACGCAAGCCTTTG 16387 || ||||| ||| |||| ||||| |||||||| || || || | | ||| | Sbjct 1538 TGTGTTGTTTGTGGTTCACAAACTGTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTC 1479 Query 16388 CTGTGCTGCAAGTGCTCATATGATCATGTTATGGCTACTGATCACAAATATGTCCTGAGT 16447 || ||| |||||| | || || ||||| |||| ||| | ||||||| | || | Sbjct 1478 CTATGCACGAAGTGCGCCTACGACCATGTCATGGGTACAAAGCACAAATTCATTATGTCT 1419 Query 16448 GTTTCACCATATGTGTGTAATTCGCCAGGATGTGATGTAAATGATGTTACCAAATTGTAT 16507 | |||| |||||||||| | || ||| ||| ||||||||||| ||||||| | Sbjct 1418 ATCACACCGTATGTGTGTAGCTATAATGGTTGTACTGTTAATGATGTTACAAAATTGTTT 1359 Query 16508 TTAGGTGGTATGTCATATTATTGTGAGGATCATAAGCCACAGTATTCATT-CAAATTGGT 16566 || || ||| | ||||||||| || || || ||||| | ||||| | | || Sbjct 1358 TTGGGAGGTCTTAACTATTATTGTACTGAGCACAAACCACAATTATCATTCCCGCTCTGT 1299 Query 16567 GATGAATGGTATGGTTTTTGGTTTATATAAACAATCTTG-TACTGGTTCGCCGTATATAG 16625 | | ||||||| || |||||| | || || | | || | |||||| || | | Sbjct 1298 GCT-AATGGTAATGTGTTTGGTCTGTA-CAAGAGTAGTGCAATTGGTTCTGAAGATGTTG 1241 Query 16626 AGGATTTTAATAAAATAGCTAGTTGCA-AATGGACAGAAGTCGATGATTATGCGCTAGCT 16684 | ||||| || ||| | ||| ||| || | ||||| | || || |||||| || ||| Sbjct 1240 ATGATTTCAACAAACTTGCT-GTTTCAGACTGGACCAATGTAGAGGATTATAAACTTGCT 1182 Query 16685 AAT 16687 ||| Sbjct 1181 AAT 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99603051169320