Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_014470.1 Length=29276 Score E Sequences producing significant alignments: (Bits) Value seq139329 196 9e-46 >seq139329 Length=1076 Score = 196 bits (216), Expect = 9e-46 Identities = 567/861 (66%), Gaps = 30/861 (3%) Strand=Plus/Minus Query 15045 TAAATTCTATGGTGGCTGGCATAACATGTTAAA-AACTGTTTACAGTGATGTTGAAACTC 15103 ||||||||||||||||||| | || ||| |||| |||| | | | ||||| || | | Sbjct 1075 TAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGC-GCGATGTGGATAATG 1017 Query 15104 CTAACCTTATGGGTTGGGATTACCCAAAATGTGATAGAGCCATGCCTAACATGCTTAGGA 15163 | | ||||| ||||| || ||||| || || | || ||||||| ||| | | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACG-- 959 Query 15164 TAATGGCATCA--CTTGTTCTTGCTCGCAAA-CATAGTACTTGTTGTAACCTTTCACACC 15220 |||||| || | || | ||| | || || | | |||||||| | | | Sbjct 958 -AATGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATA 900 Query 15221 GTTTCTACGGGTTAGCTAATGAGTGTGCTCAGGTACTTAGTGAAATGGTTATGTGTGGCG 15280 | ||||| | | ||||||||| ||||| ||||| | || | || ||| | Sbjct 899 GGTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAG 840 Query 15281 GTTCACTCTATGTGAAACCAGGCGGTACATCTTCAGGAGATGCCACCACTGCTTATGCTA 15340 || | ||| | ||||| || |||||| || || || | || || || ||||||| Sbjct 839 GTGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTA 780 Query 15341 ATAGTGTCTTTAACATTTGTCAAGCTGTTACAGCTAATGTTAAT--GCACTTTTGTCTAC 15398 | | |||||||| | |||||||||| | ||||||||||| || ||| | | Sbjct 779 ACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGT-- 722 Query 15399 TGATGGTAA------TAAAATTGCTGACAAGTATGTCCGCAATTTACAACATAGACTTTA 15452 |||| || ||| | || | ||| || | || | ||| ||| | | | Sbjct 721 TGATTCAAACACCTGTAACAATGTT-ACAGTTAAGGCCATACAGCGCAAGATATA--TGA 665 Query 15453 TGAATGTCTCTATAGAAATAGAGACGTTGATCATGAATTTGTAGAAGAATTTTACGCTTA 15512 | ||| | ||| | || | | ||| | || ||||||| |||| || ||| Sbjct 664 CAATTGTTACCGTAGTAGCAGTG---TGGATGACGACTTTGTAGTCGAATATTTTAGTTA 608 Query 15513 TTTGCGTAAACACTTTTCTATGATGATTCTCTCTGATGATGCTGTTGTTTGCTATAATAG 15572 ||| | || ||||| |||||||||||| | |||||||||| ||| ||||| || || | Sbjct 607 TTTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAA 548 Query 15573 CAACTATGCAGCTCAAGGTTTAGTAGCTAGCATTAAGAACTTTAAAGCAGTTCTTTATTA 15632 | ||||| | || |||| ||||| |||| ||||| || ||| ||||| Sbjct 547 AGATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTA 488 Query 15633 TCAAAACAATGTTTTTATGTCTGAGGCAAAATGCTGGACTGAGACCGACCTTACTAAAGG 15692 ||| |||||||| ||||||||| || || || ||| || | || |||| | || Sbjct 487 TCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGG 428 Query 15693 ACCTCATGAATTTTGCTCTCAGCATACAATGCTAGTTAAACAAGGAGATGATTACGTGTA 15752 ||| || |||||||| || || || ||| | | | || | | ||||| | || || Sbjct 427 ACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTA 368 Query 15753 CCTGCCTTACCCAGACCCATCTAGAATTTTAGGCGCTGGTTGTTTTGTTGATGATATCGT 15812 | ||||| |||||||||||||||||||| || ||| |||||||||||| || || Sbjct 367 TTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGT 308 Query 15813 CAAAAC---CGATGGTACACTTATGATAGAACGGTTTGTGTCCCTAGCGATAGACGCCTA 15869 || || | | | || | ||| | ||||| | |||||| ||||| || || || || Sbjct 307 TAAGACAGACAACGTTA---TCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATA 251 Query 15870 CCCACTTACAAAGCACCCTAA 15890 ||||| ||||| |||||||| Sbjct 250 TCCACTCACAAAACACCCTAA 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93303665580180