Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016990.2 Length=25430 Score E Sequences producing significant alignments: (Bits) Value seq96645 118 2e-22 seq92323 104 4e-18 seq139329 98.7 2e-16 seq158249 95.1 2e-15 seq140054 95.1 2e-15 seq132367 91.5 2e-14 >seq96645 Length=1578 Score = 118 bits (130), Expect = 2e-22 Identities = 361/553 (65%), Gaps = 4/553 (1%) Strand=Plus/Minus Query 15002 TTACAACAGTATTAGGTCCACCAGGCACAGGTAAGTCAACCTTTGCTATTGGTTTGGCTA 15061 ||||||| | |||||| || || | ||||| ||| | || ||| ||||||| | Sbjct 718 TTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAGGTTTGGGTT 659 Query 15062 AGTACTTTCCTAGTGCACGTATTTGCTACACTGCGTCTTCGCATGCAGCAATCGATGCAC 15121 ||| | |||| || | ||| ||||| || | ||| |||||||| | ||||| Sbjct 658 TGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTT 599 Query 15122 TCTGTGAAAAAGCTTTCAAGACAATACCTGTAGGCCAATGCAGTCGTATCGTACCCACAC 15181 | ||||||||||||| ||||| | ||| | |||| | || |||| | Sbjct 598 TATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCAAA 539 Query 15182 GTACAACTGTTGAGTGCTTTCAGGAGTTTGTCGTAAATAACACAACTGCACAGTATATCT 15241 | | | ||||| || | | || ||| ||||| || | |||||| ||| | | Sbjct 538 GAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGT 479 Query 15242 TCTCGACTATCAATGCCTTACCTGACATTAAGTGTGACATTGTAGTTGTAGATGAGGTTT 15301 | | || | ||||| || ||||| ||| ||||||||||| ||||| ||||| || | Sbjct 478 TTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTGTGGATGAAGTGT 419 Query 15302 CTATGTTGACCAATTATGAGCTCTCCTCTGTGAATGCTCGTTTGGTTTACAACCACATTG 15361 | |||| || || ||||| ||| | | ||| | | || ||||| || |||| Sbjct 418 CAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTGAGCTACAAACATATTG 359 Query 15362 TGTATGTTGGTGATCCTTACCAGTTACCTTCACCTAGAACTATGCTTACGTCTGGCCAGC 15421 | ||||| ||||| || | || | || |||||||||| || ||| | || | Sbjct 358 TTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTA-ATAAGGGTACA 300 Query 15422 TTTCA-CCAGCTGACTATAACGTAGTTACTGATATAATG-GTACATGCAGGAGCGGATGT 15479 | || || | ||||| || || || ||| | | ||| ||| | |||| | ||||| Sbjct 299 CTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTA-AACTAGGACCTGATGT 241 Query 15480 TATGCTCGACATGTGCTACAGATGCCCACGTGAAATCGTTGAGACAGTGTCTAAACTTGT 15539 | | ||| || |||||||||||| |||||| ||| | ||||| ||| ||||| Sbjct 240 ATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGT 181 Query 15540 CTACGATAACAAA 15552 || || || ||| Sbjct 180 TTATGAGAATAAA 168 >seq92323 Length=1240 Score = 104 bits (114), Expect = 4e-18 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 22528 TACAAAATTATATTGACAATCTTAACAATACTCTAGTTGACCTTGAATGGCTCAACAGAG 22587 |||| | || |||||||||||||| || || || ||||||||||||||||||||||| Sbjct 618 TACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTTGAATGGCTCAACAGGA 559 Query 22588 TGGAAACTTACCTTAAATGGCCGTGGTATATATGGCT 22624 | |||||||| | |||||||| |||||| ||||||| Sbjct 558 TTGAAACTTATGTAAAATGGCCTTGGTATGTATGGCT 522 Score = 87.8 bits (96), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 22003 AAAAGATTAATGAGTGTGTCAAATCTCAGTCGCCCAGATACGGTTTCTGTGGAAATGGCA 22062 ||||| ||||||||||||| ||||| |||||| || || || |||||||||||||| | Sbjct 1154 AAAAG-TTAATGAGTGTGTGAAATCACAGTCGGATAGGTATGGGTTCTGTGGAAATGGAA 1096 Query 22063 CACACATCTTCTCACTTACACAGACTGCACCAAATGGCATATTTTTCATGCATGCAGT 22120 ||||| | ||||||||| | ||||||| |||| || ||||| | || |||| Sbjct 1095 CACACCTATTCTCACTTGTCAATTCTGCACCTGATGGTCTACTTTTCTTTCACACAGT 1038 >seq139329 Length=1076 Score = 98.7 bits (108), Expect = 2e-16 Identities = 178/258 (69%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 13743 TTACCAAAACAATGTTTATATGGCAGACTCAAAGTGTTGGACAGAAACTGACATGAATGT 13802 ||| || |||||||| | |||| | | ||||||||| |||| | || | ||||| Sbjct 490 TTATCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGT 431 Query 13803 TGGCCCTCATGAATTTTGCTCACAGCATACTGT------TTTAGCAGAGCATGATGGTAA 13856 || || || |||||||| ||||| || || | | ||| || || |||||| | Sbjct 430 GGGACCACACGAATTTTGTTCACAACACACATTACAAATTGTAG--GACCA-GATGGTGA 374 Query 13857 ACCTTACTACTTACCTTACCCAGATGTCTCTCGCATTCTGGGTGCATGCATCTTTGTGGA 13916 || || |||||||| ||||| ||| | ||| || ||| | | ||||| || Sbjct 373 C---TATTATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGA 317 Query 13917 TGACGTTAATAAGGCTGACCCCGTTCAGAACCTTGAACGTTACATCTCACTTGCAATTGA 13976 |||| || |||| | ||| |||| | ||||||||||| | || || |||||||| Sbjct 316 TGACATTGTTAAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGA 257 Query 13977 TGCATATCCCCTCACCAA 13994 ||||||||| ||||| || Sbjct 256 TGCATATCCACTCACAAA 239 Score = 91.5 bits (100), Expect = 2e-14 Identities = 231/343 (67%), Gaps = 19/343 (6%) Strand=Plus/Minus Query 13162 AAATTCTATGGTGGTTGGGACAATATGTTACGACGACT-GATGTGTAATATCAACAATCC 13220 |||||||||||||| |||||||||||| || | ||| |||| | || | | ||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAA-AGAACTTGATGCGCGATGTGGATAATGG 1016 Query 13221 CATTTTAGTGGGTTGGGATTACCCTAAGTGTGATCGTTCTATGCCAAACATGCTGCGCAT 13280 ||| |||| ||||| || || ||||| || ||| || |||| || ||| | || || Sbjct 1015 TTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAAT 956 Query 13281 TGCCGCTTCGTGCTTGCTAGCACGA---AAACACACT---TGCTGTAACCAAAGCCAGCG 13334 || || | | || || | || |||| | || |||| || || | | Sbjct 955 GGCTTCTGC---CATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAG 899 Query 13335 ATTCTACCGTTTGGCTAATGAATGTTGC-CAAGTACTATCAGAAGTGATAGTCTCT---G 13390 ||||| || | ||||||| | | || |||||||| |||| || || | | | Sbjct 898 GTTCTATCGACTCTCTAATGAGT-TAGCTCAAGTACTCACAGAGGTTGTACATTGTACAG 840 Query 13391 GTAACAACCTCTATGTAAAACCAGGTGGCACTAGCAGTGGTGATGCAACCACAGCTTATG 13450 || | | ||| ||||||| ||||| || | |||||||| | || ||||| |||| Sbjct 839 GTGGCT---TTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATG 783 Query 13451 CCAACTCGGTATTTAACATCTTACAGGTGGTTTCTGCTAATGT 13493 | ||||| | ||||||||||| || | |||||||||||||| Sbjct 782 CTAACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGT 740 >seq158249 Length=1012 Score = 95.1 bits (104), Expect = 2e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 22528 TACAAAATTATATTGACAATCTTAACAATACTCTAGTTGACCTTGAATGGCTCAACAGAG 22587 |||| | || |||||||||||||| || || || |||||||| |||||||||||||| Sbjct 828 TACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGGA 769 Query 22588 TGGAAACTTACCTTAAATGGCCGTGGTATATATGGCT 22624 | |||||||| | |||||||| |||||| | ||||| Sbjct 768 TTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCT 732 >seq140054 Length=1182 Score = 95.1 bits (104), Expect = 2e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 22528 TACAAAATTATATTGACAATCTTAACAATACTCTAGTTGACCTTGAATGGCTCAACAGAG 22587 |||| | || |||||||| ||||| || ||||| |||||||||||||||||||| || Sbjct 476 TACAGCAGTACATTGACAACCTTAATAAGACTCTTGTTGACCTTGAATGGCTCAATAGGA 535 Query 22588 TGGAAACTTACCTTAAATGGCCGTGGTATATATGGCT 22624 | |||||||| | |||||||| |||||| | ||||| Sbjct 536 TTGAAACTTATGTAAAATGGCCTTGGTATGTGTGGCT 572 >seq132367 Length=1893 Score = 91.5 bits (100), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22527 TTACAAAATTATATTGACAATCTTAACAATACTCTAGTTGACCTTGAATGGCTCAACAGA 22586 ||||| | || || ||||||||||| || || || |||||||| |||||||||||||| Sbjct 603 TTACAGCAGTACATAGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGG 662 Query 22587 GTGGAAACTTACCTTAAATGGCCGTGGTATATATGGCT 22624 | |||||||| | |||||||| |||||| | ||||| Sbjct 663 ATTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCT 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 81039480859145