Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016991.1 Length=26041 Score E Sequences producing significant alignments: (Bits) Value seq96645 158 2e-34 seq158249 104 4e-18 seq140054 104 4e-18 seq139329 104 4e-18 seq92323 100 5e-17 seq132367 93.3 7e-15 >seq96645 Length=1578 Score = 158 bits (174), Expect = 2e-34 Identities = 359/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 14958 GGACCACCTGGCACTGGTAAATCTACCTT-TGCAATTGGTTTAGCCAAGTACTATCCTAA 15016 || || ||||| | ||||||||| || || || || ||||| | ||| |||||| | Sbjct 704 GGTCCTCCTGGTAGTGGTAAATC-ACATTGTGTTATAGGTTTGGGTTTGTATTATCCTCA 646 Query 15017 TGCACGTATCTGTTACACAGCATCATCGCATGCTGCTATAGATGCGTTATGTGAAAAAGC 15076 || | || ||||||||||| || ||||| ||| | ||||| |||||||||||||| Sbjct 645 AGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTTTATGTGAAAAAGC 586 Query 15077 TTTTAAAACATTGCCTGTAGGCCAATGCAGTCGTATAGTACCCACTCGTACAACTGTTGA 15136 || || | || ||| | |||| | ||| |||| | | | ||||| Sbjct 585 TTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCAAAGAATCAGAGTTGA 526 Query 15137 ATGCTTCCAGGACTTTGTTGTTAATAACACTACTGCACAATACATCTTTTCAACAATTAA 15196 || | || ||| |||||| || | ||||||||| | |||| ||| |||| Sbjct 525 TTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGTTTTGCACAGTTAA 466 Query 15197 TGCTTTACCTGATATAAAGTGTGACATTGTTGTTGTAGATGAAGTATCAATGTTAACCAA 15256 |||||| ||||| || ||||||||||| ||||| |||||||| ||||||| || || Sbjct 465 TGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAA 406 Query 15257 CTATGAGCTTTCTTCTGTAAATGCCAGGTTGGTTTACAATCATATTGTTTATGTTGGCGA 15316 |||||| || | | ||||| || || ||||| |||||||||||||| || || Sbjct 405 CTATGATCTCAGTGTTATAAATAGTAGACTGAGCTACAAACATATTGTTTATGTAGGTGA 346 Query 15317 CCCTTATCAGTTGCCATCACCTAGAACTATGCTAACTACAGGTCAGCTTTCTCCTGCTGA 15376 ||| | || | ||| |||||||||| || | | || ||| || |||| || Sbjct 345 CCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACACTCCAGCCTGAGGA 286 Query 15377 TTATAATGTAGTCACAGATATAATG-GTGCACAATGGAGCAGATG---TTATGCTCGATA 15432 || ||||| || || | | ||| || || | ||| | |||| || ||| | | | Sbjct 285 CTACAATGTTGTGACTCAGAGGATGTGTAAACTA-GGACCTGATGTATTTTTGCAC-AAA 228 Query 15433 TGTGCTATAGATGCCCACGTGAGATTGTAGACACGGTGTCTAAACTTGTCTA 15484 ||| || ||||||||| ||| ||||| | || || ||| ||||| || Sbjct 227 TGT--TACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGTTTA 178 >seq158249 Length=1012 Score = 104 bits (114), Expect = 4e-18 Identities = 134/181 (74%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 22646 CTGCAGCAGTACATTGACAATCTTAACAATACTCTAGTAGACCTTGAGTGGCTTAATAGA 22705 || ||||||||||||||||||||||| || || || || ||||| || ||||| || || Sbjct 829 CTACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGG 770 Query 22706 GTTGAAACATATTTAAAGTGGCCATGGTACATATGGCTTCTCATTTTCTTAGCAATAGCA 22765 ||||||| ||| |||| ||||||||||| | ||||| || ||| |||| ||| | Sbjct 769 ATTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCTACTAATTGGATTAG---TAGTA 713 Query 22766 GCATT-TGCA-ACAATACTTGTCACTAT----CTTTTTGTGCACAGGATGTTGCGGAGGC 22819 | ||| |||| || | |||| ||||| || | || |||| || || || ||| || Sbjct 712 GTATTCTGCATACCA---TTGTTACTATTTTGCTGTCTGAGCACTGGTTGCTGTGGATGC 656 Query 22820 T 22820 | Sbjct 655 T 655 >seq140054 Length=1182 Score = 104 bits (114), Expect = 4e-18 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22646 CTGCAGCAGTACATTGACAATCTTAACAATACTCTAGTAGACCTTGAGTGGCTTAATAGA 22705 || ||||||||||||||||| ||||| || ||||| || |||||||| ||||| ||||| Sbjct 475 CTACAGCAGTACATTGACAACCTTAATAAGACTCTTGTTGACCTTGAATGGCTCAATAGG 534 Query 22706 GTTGAAACATATTTAAAGTGGCCATGGTACATATGGCTTCTCATT 22750 ||||||| ||| |||| ||||| ||||| | ||||| || ||| Sbjct 535 ATTGAAACTTATGTAAAATGGCCTTGGTATGTGTGGCTACTAATT 579 >seq139329 Length=1076 Score = 104 bits (114), Expect = 4e-18 Identities = 234/343 (68%), Gaps = 19/343 (6%) Strand=Plus/Minus Query 13104 AAATTTTATGGTGGTTGGGACAACATGTTACGACGTCTT-ATG---GATGGCATAAATAA 13159 ||||| |||||||| |||||||| ||| || | ||| ||| |||| | |||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAA-AGAACTTGATGCGCGATG---TGGATAA 1019 Query 13160 TCCCATTTTAGTGGGTTGGGATTACCCTAAGTGTGACCGGTCTATGCCCAACATACTACG 13219 | ||| |||| ||||| || || ||||| ||||| || |||| || || |||| Sbjct 1018 TGGTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACG 959 Query 13220 CATTGCTGCCTCTTGTTTGTTGGCCCGTAAACACACT---TGTTGTAATCAGAGTCAGCG 13276 || ||| | | | |||| ||| |||| | ||||||| || ||| | | Sbjct 958 AATGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAG 899 Query 13277 ATTTTATCGTCTGGCTAATGAATGTTGC-CAAGTACTATCTGAAGTTGTAGTTTCT---G 13332 || ||||| || ||||||| | | || |||||||| | || |||||| || | | Sbjct 898 GTTCTATCGACTCTCTAATGAGT-TAGCTCAAGTACTCACAGAGGTTGTACATTGTACAG 840 Query 13333 GCAACAATTTGTATGTTAAACCAGGTGGTACTAGCAGTGGTGATGCCACTACCGCGTATG 13392 | | || ||| | ||||| |||||||| | |||||||| | ||||| ||||||| Sbjct 839 GTGGC---TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATG 783 Query 13393 CCAACTCTGTATTTAACATTCTACAGGTTGTTTCTGCTAACGT 13435 | ||||| | |||||||| | || | |||||||||||| || Sbjct 782 CTAACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGT 740 >seq92323 Length=1240 Score = 100 bits (110), Expect = 5e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 22646 CTGCAGCAGTACATTGACAATCTTAACAATACTCTAGTAGACCTTGAGTGGCTTAATAGA 22705 || ||||||||||||||||||||||| || || || || |||||||| ||||| || || Sbjct 619 CTACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTTGAATGGCTCAACAGG 560 Query 22706 GTTGAAACATATTTAAAGTGGCCATGGTACATATGGCT 22743 ||||||| ||| |||| ||||| ||||| ||||||| Sbjct 559 ATTGAAACTTATGTAAAATGGCCTTGGTATGTATGGCT 522 >seq132367 Length=1893 Score = 93.3 bits (102), Expect = 7e-15 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 22649 CAGCAGTACATTGACAATCTTAACAATACTCTAGTAGACCTTGAGTGGCTTAATAGAGTT 22708 ||||||||||| ||||||||||| || || || || ||||| || ||||| || || || Sbjct 606 CAGCAGTACATAGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGGATT 665 Query 22709 GAAACATATTTAAAGTGGCCATGGTACATATGGCTTCTCAT 22749 ||||| ||| |||| ||||||||||| | ||||| || || Sbjct 666 GAAACTTATGTAAAATGGCCATGGTATGTGTGGCTACTAAT 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 82989432531060