Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016992.1 Length=26083 Score E Sequences producing significant alignments: (Bits) Value seq96645 116 6e-22 seq139329 96.9 6e-16 seq92323 95.1 2e-15 seq158249 93.3 7e-15 seq132367 89.7 9e-14 >seq96645 Length=1578 Score = 116 bits (128), Expect = 6e-22 Identities = 363/554 (66%), Gaps = 8/554 (1%) Strand=Plus/Minus Query 15019 TTACAACCGTACTAGGACCACCAGGCACAGGTAAATCTACCTT-TGCTATTGGTTTGGCT 15077 ||||||| | | ||| || || || | |||||||| || || || ||| ||||||| | Sbjct 718 TTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATC-ACATTGTGTTATAGGTTTGGGT 660 Query 15078 AAGTACTTTCCTAGTGCACGAATTTGCTACACTGCCTCTTCGCATGCAGCAATCGATGCA 15137 ||| | |||| || ||||| ||||| || | ||| |||||||| | ||||| Sbjct 659 TTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCT 600 Query 15138 CTCTGTGAAAAAGCTTTCAAGACACTACCTGTAGGCCAATGCAGTCGTATCGTACCCACA 15197 | ||||||||||||| ||||| | ||| | |||| | || |||| | Sbjct 599 TTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCAA 540 Query 15198 CGTACAACTGTCRAGTGCTTTCAGGAGTTCGTCGTAAACAACACTACTGCACAGTATATC 15257 | | | || | || | | || || || || || | |||||| ||| | Sbjct 539 AGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTG 480 Query 15258 TTCTCAACTATCAATGCCTTACCTGACATTAAGTGTGACATTGTAGTTGTAGATGAAGTT 15317 || | || | ||||| || ||||| ||| ||||||||||| ||||| |||||||| Sbjct 479 TTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTGTGGATGAAGTG 420 Query 15318 TCTATGTTGACCAACTATGAGCTTTCCTCTGTGAATGCCCGCTTGGTCTACAATCACATT 15377 || |||| || |||||||| || | | ||| | || |||||| || ||| Sbjct 419 TCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTGAGCTACAAACATATT 360 Query 15378 GTATATGTTGGTGACCCTTATCAGTTACCTTCACCTAGAACTATGCTTACGTCTGGCCAG 15437 || ||||| |||||||| | || | || |||||||||| || ||| | || | Sbjct 359 GTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTA-ATAAGGGTAC 301 Query 15438 CTTTCA-CCAGCTGACTATAACGTAGTTACAGATATAATG-GTACATGCT-GGAGCTGAT 15494 | || || | ||||| || || || || | | ||| ||| | || ||| ||||| Sbjct 300 ACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAAA--CTAGGACCTGAT 243 Query 15495 GTTATGCTCGACATGTGCTATAGATGCCCACGTGAAATCGTTGAGACAGTGTCTAAACTT 15554 || | | ||| || || ||||||||| |||||| ||| | ||||| ||| ||| Sbjct 242 GTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTT 183 Query 15555 GTCTACGATAATAA 15568 || || || ||||| Sbjct 182 GTTTATGAGAATAA 169 >seq139329 Length=1076 Score = 96.9 bits (106), Expect = 6e-16 Identities = 231/342 (68%), Gaps = 17/342 (5%) Strand=Plus/Minus Query 13179 AAATTCTACGGAGGGTGGGACAACATGTTACGTAGGCTGATGTGTAATATTAATAATCCC 13238 |||||||| || || |||||||| ||| || | ||||| | || | ||||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 13239 ATTTTAGTGGGTTGGGATTACCCCAAGTGTGATCGCTCCATGCCTAACATGCTTCGCATT 13298 ||| |||| ||||| || || ||||| || || | ||||||| ||| | || || Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 13299 GCTGC-GTCATGTT--TGCTTGCACGTAAACACACT---TGCTGTAATCAAAGTCAGCGA 13352 ||| | | |||| | || | | ||| |||| | || |||| || ||| | | Sbjct 954 GCTTCTGCCATGGTATTGGGTTC---TAAGCACATTGGTTGTTGTACACATAGTGATAGG 898 Query 13353 TTCTATCGTTTGGCTAATGAATGTTGC-CAAGTACTATCAGAAGTGGTAGTCTCT---GG 13408 |||||||| | ||||||| | | || |||||||| |||| || ||| | | || Sbjct 897 TTCTATCGACTCTCTAATGAGT-TAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGG 839 Query 13409 TAACAATCTCTACGTAAAACCTGGTGGCACTAGCAGTGGTGATGCCACCACAGCTTATGC 13468 | | | || ||||||||||||| || | |||||||| | || ||||| ||||| Sbjct 838 TGGCTTT---TATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGC 782 Query 13469 TAATTCAGTGTTTAACATTCTACAGGTTGTCTCTGCAAATGT 13510 ||| |||| |||||||| | || | ||| ||||| ||||| Sbjct 781 TAACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGT 740 >seq92323 Length=1240 Score = 95.1 bits (104), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 22073 GGCAGGTTAGCTGCTCTCAATGCGTTTGTCACACAAACATTAGCTAAACTTGCTGAGGTT 22132 || || ||||| || || ||||| | ||| | ||||| ||| || | |||||| || Sbjct 1240 GGTAGATTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTC 1181 Query 22133 A-GACAATCTCGCCAGTTAGCTCTTGACAAAGTTAATGAGTGTGTTAAATCGCAATCCGC 22191 | | | | || | || || | || ||||||||||||||||| ||||| || || | Sbjct 1180 AAGGCTAGTAGGCAACTT-GCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGA 1122 Query 22192 TCGTTACGGATTTTGCGGCAACGGAACTCATCTTTTCTCATTTTCAAATGCAGCACCGTA 22251 | | || || || || || || ||||| || || |||||| || ||| | ||||| | Sbjct 1121 TAGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGA 1062 Query 22252 TGGACTGATGTTTTTCCACACTGTTCTGCTTCCCACACAAT 22292 ||| || | || || ||||| ||| ||||||| ||| ||| Sbjct 1061 TGGTCTACTTTTCTTTCACACAGTTTTGCTTCCTACAGAAT 1021 Score = 84.2 bits (92), Expect = 4e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 22679 GAACTTGAGCAGTACATCAAAAACATTAACAGCACACTAGTTGACCTCGAATGGCTCAAC 22738 ||||| |||||||||| | || |||| | || || |||||||| |||||||||||| Sbjct 622 GAACTACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTTGAATGGCTCAAC 563 Query 22739 CGTGTTGAAACCTACATCAAATGGCCATGGTATATATGGCT 22779 | ||||||| || | |||||||| |||||| ||||||| Sbjct 562 AGGATTGAAACTTATGTAAAATGGCCTTGGTATGTATGGCT 522 >seq158249 Length=1012 Score = 93.3 bits (102), Expect = 7e-15 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 22651 AGCTGCCAACCTCTCTCAAATTGTTGAGGAACTTGAGCAGTACATCAAAAACATTAACAG 22710 ||| | ||||||| || | || | | ||||| |||||||||| | || |||| | Sbjct 860 AGCAGACAACCTCACTAATATCGCACATGAACTACAGCAGTACATTGACAATCTTAATAA 801 Query 22711 CACACTAGTTGACCTCGAATGGCTCAACCGTGTTGAAACCTACATCAAATGGCCATGGTA 22770 || || ||||||||||||||||||||| | ||||||| || | |||||||||||||| Sbjct 800 GACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCATGGTA 741 Query 22771 TATATGGCT 22779 | | ||||| Sbjct 740 TGTGTGGCT 732 >seq132367 Length=1893 Score = 89.7 bits (98), Expect = 9e-14 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 22651 AGCTGCCAACCTCTCTCAAATTGTTGAGGAACTTGAGCAGTACATCAAAAACATTAACAG 22710 ||||| ||||||| || || | | ||| | |||||||||| | || |||| | Sbjct 572 AGCTGACAACCTCACTACCATAGCACATGAATTACAGCAGTACATAGACAATCTTAATAA 631 Query 22711 CACACTAGTTGACCTCGAATGGCTCAACCGTGTTGAAACCTACATCAAATGGCCATGGTA 22770 || || ||||||||||||||||||||| | ||||||| || | |||||||||||||| Sbjct 632 GACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCATGGTA 691 Query 22771 TATATGGCT 22779 | | ||||| Sbjct 692 TGTGTGGCT 700 Score = 87.8 bits (96), Expect = 3e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22157 GACAAAGTTAATGAGTGTGTTAAATCGCAATCCGCTCGTTACGGATTTTGCGGCAACGGA 22216 || ||||||||||| || || ||||| ||||| | | | || || ||||| || || ||| Sbjct 66 GAAAAAGTTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTTGTGGAAATGGA 125 Query 22217 ACTCATCTTTTCTCATTTTCAAATGCAGCACCGTATGGACTGATGTTTTTCCACACTGTT 22276 || || || |||||| || ||| | ||||| |||| || | || || ||||| ||| Sbjct 126 ACACACCTGTTCTCACTTGTCAATTCTGCACCTGATGGTTTGCTCTTCTTTCACACAGTT 185 Query 22277 CTGCTTCCCAC 22287 |||||||| || Sbjct 186 CTGCTTCCTAC 196 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83123471762190