Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016993.1 Length=26689 Score E Sequences producing significant alignments: (Bits) Value seq139329 93.3 7e-15 seq132367 87.8 3e-13 seq92323 87.8 3e-13 >seq139329 Length=1076 Score = 93.3 bits (102), Expect = 7e-15 Identities = 230/340 (68%), Gaps = 13/340 (4%) Strand=Plus/Minus Query 13189 AAGTTTTATGGTGGTTGGGACAATATGTTACGTAGGCTGATGCACAATATCAATAATCCC 13248 || || |||||||| |||||||||||| || | |||||| | || | ||||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 13249 ATTTTAGTGGGCTGGGATTACCCTAAGTGTGATAGATCTATGCCAAACATTCTGAGGATT 13308 ||| |||| ||||| || || ||||| || | || |||| || || | | || Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 13309 GCATCCTC-ATGCTTGTTGGCTAGAAAGCACACT---TGTTGTAATCAGAGCCAGCGATT 13364 || || | ||| | |||| | ||||||| | ||||||| || || | | || Sbjct 954 GCTTCTGCCATGGTA-TTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 13365 CTATCGCCTGGCTAATGAGTGTTGC-CAGGTGCTATCCGAAGTGGTAG--TGT-CAGGCA 13420 |||||| || ||||||||| | || || || || | || || ||| ||| |||| Sbjct 895 CTATCGACTCTCTAATGAGT-TAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 13421 ACAACCTCTATGTTAAACCAGGTGGCACTAGTAGTGGTGATGCAACCACTGCATATGCCA 13480 | | ||| | ||||| ||||| || | ||||||||| | || || || ||||| | Sbjct 836 GCT---TTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTA 780 Query 13481 ACTCGGTATTTAACATTCTACAGGTTGTCTCTGCTAATGT 13520 |||| | |||||||| | || | ||| ||||||||||| Sbjct 779 ACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGT 740 >seq132367 Length=1893 Score = 87.8 bits (96), Expect = 3e-13 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 22161 GCTGAAGTCC--GCCAGCAGCGGCAGCTAGCCACTGATAAAGTTAATGAGTGCGTTAAAT 22218 ||||||||| || || || ||| || || | || ||||||||||| ||||| |||| Sbjct 33 GCTGAAGTCAAGGCTAGTAG--GCAACTGGCAATGGAAAAAGTTAATGAATGCGTGAAAT 90 Query 22219 CACAGTCCCCCCGCTATGGATTCTGTGGTAACGGCACCCATCTCTTCTCAATTGTCAATG 22278 |||| || | ||||| || ||||| || || || || || |||||| |||||||| Sbjct 91 CACAATCGGATAGGTATGGTTTTTGTGGAAATGGAACACACCTGTTCTCACTTGTCAATT 150 Query 22279 CAGCGCCACAAGGGTTGTTATTCTTCCACACTGTGTTGTTACCAACCCAAT 22329 | || || | || ||| | ||||| ||||| || || | || ||| ||| Sbjct 151 CTGCACCTGATGGTTTGCTCTTCTTTCACACAGTTCTGCTTCCTACCGAAT 201 >seq92323 Length=1240 Score = 87.8 bits (96), Expect = 3e-13 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 22161 GCTGAAGTCC--GCCAGCAGCGGCAGCTAGCCACTGATAAAGTTAATGAGTGCGTTAAAT 22218 ||||||||| || || || ||| || || | || |||||||||||||| || |||| Sbjct 1189 GCTGAAGTCAAGGCTAGTAG--GCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAAT 1132 Query 22219 CACAGTCCCCCCGCTATGGATTCTGTGGTAACGGCACCCATCTCTTCTCAATTGTCAATG 22278 ||||||| | ||||| |||||||| || || || || || |||||| |||||||| Sbjct 1131 CACAGTCGGATAGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATT 1072 Query 22279 CAGCGCCACAAGGGTTGTTATTCTTCCACACTGTGTTGTTACCAAC 22324 | || || | || | | ||||| ||||| || ||| | || || Sbjct 1071 CTGCACCTGATGGTCTACTTTTCTTTCACACAGTTTTGCTTCCTAC 1026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 85057466382780