Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016994.1 Length=26077 Score E Sequences producing significant alignments: (Bits) Value seq96645 196 8e-46 seq158249 96.9 6e-16 seq132367 96.9 6e-16 seq139329 86.0 1e-12 >seq96645 Length=1578 Score = 196 bits (216), Expect = 8e-46 Identities = 411/602 (68%), Gaps = 18/602 (3%) Strand=Plus/Minus Query 14899 AAGCAAAAGATTACAACAGTATTAGGTCCTCCAGGCACTGGTAAATCAACTTTTGCTATA 14958 |||||||| ||||||| | ||||||||| || | |||||||||| || || |||| Sbjct 728 AAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATA 669 Query 14959 GGTTTAGCTAAGTATTTTCCAAATGCCAGGATCTGTTACACAGCATCTTCACATGCTGCC 15018 ||||| | | ||||| ||| | || || || ||||||||||| ||||||||| || Sbjct 668 GGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCT 609 Query 15019 ATTGATGCACTATGTGAAAAAGCTTATAAAACACTGCCCAG-AGAACAATGTTCACGTAT 15077 | ||||| ||||||||||||||| || | ||| | || |||||||| | || Sbjct 608 GTGGATGCTTTATGTGAAAAAGCTTCCAAGA-ACTTTAATGTTGATAAATGTTCAAGGAT 550 Query 15078 TGTACCCACGCGCACTACAGTTGAATGCTTCTCT-GACTTTGTTGTTAACAATACAACTG 15136 |||| | | | |||||| || || | | | ||| ||| ||||| | || Sbjct 549 AATACCTCAAAGAATCAGAGTTGATTG-TTATATGGGTTTTAAACCTAATAATACCAATG 491 Query 15137 CAAAGTATGTTTTCTCTACTATCAATGCATTGCCTGACATAAAATGTGACATTGTAGTAG 15196 || | ||| | || | || | ||||| |||||||| || ||||||||||| || | Sbjct 490 CACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTG 431 Query 15197 TGGATGAAATTTCAATGTTGACAAACTATGAACTTTCCTCAGTG-----AACGCTCGTTT 15251 |||||||| | ||||||| ||||||||||| ||||||| || | | | Sbjct 430 TGGATGAAGTGTCAATGTGTACAAACTATGA-----TCTCAGTGTTATAAATAGTAGACT 376 Query 15252 GTCTTACAACCACATTGTGTACGTAGGAGACCCCTACCAGTTACCATCGCCACGTACTAT 15311 | ||||| || ||||| || ||||| ||||| | || | ||| | || | || | Sbjct 375 GAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTT 316 Query 15312 GTTAACTAGTGGTCAACTCCAACCAGTTGACTACAATGTAGTTACATCA-ATTATGGTGC 15370 | | | || ||| |||||| || | ||||||||||| || || ||| | || ||| Sbjct 315 GATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGAC-TCAGAGGAT-GTGT 258 Query 15371 AAGCT-GGAGCAGATGTTATGTTAAACATCTGTTTTAGATGCCCAGCAGAAATCGTGTAC 15429 || || ||| | ||||| | || ||| |||| ||||||||||| ||||| || | Sbjct 257 AAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAA 198 Query 15430 ACGGTTTCTAAGCTTGTTTATGATAACAAGTTACTGAGTGCTAAGCCTGCTTCTAAGCAG 15489 || || ||| ||||||||||| || || || | || || |||| || |||||| Sbjct 197 ACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAG 138 Query 15490 TG 15491 || Sbjct 137 TG 136 >seq158249 Length=1012 Score = 96.9 bits (106), Expect = 6e-16 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22727 AGCTGAAAACCTCTCTATGATAGCTTATCAGCTAGAGGAGTATATTAAAAATATAAACAA 22786 ||| || |||||| ||| || || || | ||| || |||| ||| | ||| | || || Sbjct 860 AGCAGACAACCTCACTAATATCGCACATGAACTACAGCAGTACATTGACAATCTTAATAA 801 Query 22787 CACACTTGTAGACCTAGAATGGCTAAATCGTGTTGAAACTTACCTTAAATGGCCATGGTA 22846 || ||||| ||||| |||||||| || | |||||||||| | |||||||||||||| Sbjct 800 GACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCATGGTA 741 Query 22847 TGTCTGGCTAGCAATAGCGTTAG 22869 ||| |||||| ||| | |||| Sbjct 740 TGTGTGGCTACTAATTGGATTAG 718 >seq132367 Length=1893 Score = 96.9 bits (106), Expect = 6e-16 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22727 AGCTGAAAACCTCTCTATGATAGCTTATCAGCTAGAGGAGTATATTAAAAATATAAACAA 22786 |||||| |||||| ||| ||||| || | || || |||| || | ||| | || || Sbjct 572 AGCTGACAACCTCACTACCATAGCACATGAATTACAGCAGTACATAGACAATCTTAATAA 631 Query 22787 CACACTTGTAGACCTAGAATGGCTAAATCGTGTTGAAACTTACCTTAAATGGCCATGGTA 22846 || ||||| ||||| |||||||| || | |||||||||| | |||||||||||||| Sbjct 632 GACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCATGGTA 691 Query 22847 TGTCTGGCTAGCAATAGCGTTAG 22869 ||| |||||| ||| | |||| Sbjct 692 TGTGTGGCTACTAATCGGATTAG 714 >seq139329 Length=1076 Score = 86.0 bits (94), Expect = 1e-12 Identities = 236/355 (66%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 13556 TGATGATTCTGTCTGATGACGGTGTTGCCTGCATTGATCAAGAAGCTGCCAAACAAGGTA 13615 |||||||| |||||||||| ||||| | || | |||| ||| | | ||| Sbjct 587 TGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGATCTTGGTT 528 Query 13616 TGGTAGCAGATTTAGACGATTTTAGAGACGTCT-TGTTCTACCAGAACAATGTTTACATG 13674 |||||||| | | | ||||| || | || | | || ||||||||||| | ||| Sbjct 527 ATGTAGCAGACATTGGTGCTTTTA-AGGCCACTCTATATTATCAGAACAATGTGTTTATG 469 Query 13675 TCTGACAG-TAAATGTTGGATAGAGACAGACATGAGTAAAGGACCTCATGAGTTTTGCTC 13733 ||| |||| ||| |||||| |||| |||| | | | ||||| || || ||||| || Sbjct 468 TCT-ACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATTTTGTTC 410 Query 13734 ACAACACACTGT---GTTGGCAGAATATGATGGGGAGCCCTGTTACTATCCCTATCCTGA 13790 ||||||||| | | | || | ||||| || || ||| | || ||||| || Sbjct 409 ACAACACACATTACAAATTGTAGGACCAGATGGTGA---CTATTATTTACCTTATCCAGA 353 Query 13791 TGTCTCAAGAATATTAGGTGCATGTATCTTTGTCAATGAGACAGAAAAGACTGACCCAGT 13850 || ||||| || ||| || | ||||| |||| | | ||||| ||| || Sbjct 352 CCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACAACGT 293 Query 13851 TCAAAATCTTGAACGTTATATCTCATTGGCTATAGACGCATACCCACTCACAAAA 13905 | | |||||||||||| | || | || || || ||||| |||||||||||| Sbjct 292 TATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83104323300600