Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016995.1 Length=26227 Score E Sequences producing significant alignments: (Bits) Value seq96645 149 1e-31 seq132367 105 1e-18 seq158249 91.5 2e-14 seq140054 86.0 1e-12 seq139329 86.0 1e-12 seq92323 80.6 4e-11 >seq96645 Length=1578 Score = 149 bits (164), Expect = 1e-31 Identities = 387/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 14463 TTACCACTGTCTTAGGCCCTCCCGGTACTGGTAAGTCTACATT-TGCAATAGGGTTAGCA 14521 |||| ||| || ||| ||||| |||| |||||| || ||||| || ||||| || | Sbjct 718 TTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATC-ACATTGTGTTATAGGTTTGGGT 660 Query 14522 TGTTATTATCCTGGTGCTAGGGTTTGTTATACAGCCTCATCACATGCAGCTATTGATGCA 14581 | ||||||||| ||||| || ||| ||||| | |||||||||||| | ||||| Sbjct 659 TTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCT 600 Query 14582 CTGTGTCAAAAAGCACTACATGCAC-TCCCTGTTGAAAATTGTACTCGTATTGTACCTAC 14640 | ||| ||||||| | || | || | |||||| || ||| | | || ||||| Sbjct 599 TTATGTGAAAAAGC-TTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCA 541 Query 14641 TAGAACAACCGTAGACTGTTTTCAAGAATTTACGGTTAATAATACGAGTGCTAAATATGT 14700 |||| | || || |||| | | |||| ||||||||| | ||| ||||| | Sbjct 540 AAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTT 481 Query 14701 CTTTTCTACTATAAATGCTTTACCGGACATAAAGTGTGACATAGTCGTCGTGGACGAGAT 14760 |||| || | |||||||| || || || |||||||| || || ||||| || | Sbjct 480 GTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTGTGGATGAAGT 421 Query 14761 ATCTATGCTTACTAATTATGAACTTAGCAGTGTT---AATGCTAGATTGTCTTACTCACA 14817 || ||| ||| || ||||| || ||||||| ||| |||| || ||| ||| Sbjct 420 GTCAATGTGTACAAACTATGATCT---CAGTGTTATAAATAGTAGACTGAGCTACAAACA 364 Query 14818 TATAGTATATGTTGGTGATCCTTATCAGTTGCCGTCACCGCGTACTATG-TTAACAGGGG 14876 ||| || ||||| ||||| || | || | || |||| | || || |||| | ||| Sbjct 363 TATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGG 304 Query 14877 GCCAATTGGAACCCACAGACTATAATGTAGTAACTACTATCATGGTTAATGCAGGTGCAG 14936 | | | | || ||||| ||||| || ||| | ||| ||| ||| | | Sbjct 303 TAC-ACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAAACTAGGACCTG 245 Query 14937 ATGTTATGTTAGATAGATGCTATCGCTGCCCTGCAGAAATTGTGTCAACTGTTTCAAAGC 14996 |||| | || | | ||| || | ||||| || |||||||| ||| || || | Sbjct 244 ATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTC 185 Query 14997 TTGTTTATGATAACAAGCTTTCATCTGTAAAACCTAAGTCA 15037 |||||||||| || || ||| | |||| || ||| ||||| Sbjct 184 TTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCA 144 >seq132367 Length=1893 Score = 105 bits (116), Expect = 1e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22091 TAAACCTGACGTCAGAGCTAGAACAATTAAAAGCCTCCACTGGCAATTTTACTCAAATTT 22150 ||||||| || |||| |||| |||||| || | ||| ||| | ||| || Sbjct 535 TAAACCTCACTGCAGAAATAGACCAATTAGAAACGAGAGCTGACAACCTCACTACCATAG 594 Query 22151 CTCAGGAAATACAGGATTACATAAATAAACTCAATGACACTCTAGTTGACTTAGAGTGGC 22210 | || ||| ||||| | |||||| | || || ||| | || || |||||| | || |||| Sbjct 595 CACATGAATTACAGCAGTACATAGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGC 654 Query 22211 TCAACAGAGTAGAAACTTATGTTAAATGGCCATGGTGGGTGTGGCTTCTTATC 22263 ||||||| | ||||||||||| ||||||||||||| |||||||| || ||| Sbjct 655 TCAACAGGATTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCTACTAATC 707 >seq158249 Length=1012 Score = 91.5 bits (100), Expect = 2e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 22153 CAGGAAATACAGGATTACATAAATAAACTCAATGACACTCTAGTTGACTTAGAGTGGCTC 22212 || ||| ||||| | ||||| | || || ||| | || || |||||| | || |||||| Sbjct 835 CATGAACTACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTC 776 Query 22213 AACAGAGTAGAAACTTATGTTAAATGGCCATGGTGGGTGTGGCTTCTTAT 22262 ||||| | ||||||||||| ||||||||||||| |||||||| || || Sbjct 775 AACAGGATTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCTACTAAT 726 >seq140054 Length=1182 Score = 86.0 bits (94), Expect = 1e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 22156 GAAATACAGGATTACATAAATAAACTCAATGACACTCTAGTTGACTTAGAGTGGCTCAAC 22215 ||| ||||| | ||||| | || || ||| | ||||| |||||| | || |||||||| Sbjct 472 GAACTACAGCAGTACATTGACAACCTTAATAAGACTCTTGTTGACCTTGAATGGCTCAAT 531 Query 22216 AGAGTAGAAACTTATGTTAAATGGCCATGGTGGGTGTGGCTTCTTAT 22262 || | ||||||||||| |||||||| |||| |||||||| || || Sbjct 532 AGGATTGAAACTTATGTAAAATGGCCTTGGTATGTGTGGCTACTAAT 578 >seq139329 Length=1076 Score = 86.0 bits (94), Expect = 1e-12 Identities = 183/270 (68%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 12695 GGTTGGGATTATCCTAAATGTGATCGTTCTATGCCGAATATATTGCGCATAGCTTCTTCA 12754 || ||||| ||||| || || || ||| || |||| ||||| | || || |||||| | Sbjct 1005 GGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATGGCTTCTGCC 946 Query 12755 TTATTATTAGCCCGTAAACACACC---TGTTGTACGAATCGACAGAGGTTTTACCGTTTG 12811 | |||| | ||| |||| |||||||| || | | ||||| || || | Sbjct 945 ATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTCTATCGACTC 886 Query 12812 GCTAATGAGTGTTGTCAGGTATTGTCTGAAGTAGTC--TTAT-CTGGCAATGTATTGTAT 12868 ||||||||| ||| ||| | | || || || || | | || || || ||| Sbjct 885 TCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGG---TGGCTTTTAT 829 Query 12869 GTTAAGCCTGGCGGTACTAGCAGTGGGGATGCAACTACGGCTTATGCTAACTCAGTGTTT 12928 | || ||||| ||||| | ||||| || | ||||| || ||||||||||||| ||| Sbjct 828 ATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCAGCTTTT 769 Query 12929 AACATATTACAAGTAGTGTCAGCAAATGTT 12958 ||||| || |||| || || || |||||| Sbjct 768 AACATCTTTCAAGCTGTTTCTGCTAATGTT 739 Score = 80.6 bits (88), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 13207 TTATCAAAACAACGTTTATATGGCAGATTCTAAGTGTTGGGTTGAGTCTGATCTTAAAGT 13266 |||||| ||||| || | |||| | ||||||||||||| || | |||||||| || Sbjct 490 TTATCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGT 431 Query 13267 CGGCCCCCATGAATTTTGTTCACAGCACACAATTC---TTACAGAGGTTGATGGTGAACC 13323 || || || |||||||||||||| |||||| | | || || |||||||| Sbjct 430 GGGACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGA--- 374 Query 13324 TTATTATCTGCCTTATCCAGA 13344 |||||| | ||||||||||| Sbjct 373 CTATTATTTACCTTATCCAGA 353 >seq92323 Length=1240 Score = 80.6 bits (88), Expect = 4e-11 Identities = 465/730 (64%), Gaps = 34/730 (5%) Strand=Plus/Minus Query 21550 GGTCGGTTGGCAGCCCTCAATGCATTTGTGTCCCAAACCTTAACCAAGGCAGAGCAGGTC 21609 ||| | || || || || ||||| | |||||| ||||||||||| || | | ||| Sbjct 1240 GGTAGATTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTC 1181 Query 21610 C-GCCAATCTAGGTTGCTTGCTCAGCAGAAAGTTAATGAGTGTGTCAAATCGCAGTCTCA 21668 | | | |||| ||||| | | ||||||||||||||||| ||||| ||||| | Sbjct 1180 AAGGCTAG-TAGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGA 1122 Query 21669 GCGGTTTGGTTTCTGTGGCAATGGTTCTCACATCTTTACTATTGCCAATGCCGCGCCTGA 21728 ||| ||| |||||||| ||||| | ||| | || | ||| |||| | || ||||| Sbjct 1121 TAGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGA 1062 Query 21729 TGGCATTATGTTTTTGCACACGGTACTACAACCT---GTAAGCTACATTACTGTTGTAGC 21785 ||| | | || || ||||| || | | ||| | | | | | | || | || Sbjct 1061 TGGTCTACTTTTCTTTCACACAGTTTTGCTTCCTACAGAATGGGA-AGAAGTGACG--GC 1005 Query 21786 CTATTCAGGGCTGTGTGTAGACAACACTTATGGCTACGCTCTTAAAGAGCCTAACCTAGC 21845 | ||||| | ||||| | ||||||||| || | | ||||| | | | | Sbjct 1004 ATGGTCAGGAATATGTGTCAATGACACTTATGCATATGTGTTGAAAGACTTTGATCATTC 945 Query 21846 ACTTGTGCAGT-ATAATGGTTATTAT---GTTACTCCGCGTAATATGTATCAACCACGTC 21901 || | |||| |||||||| ||| || ||||| |||||||||| |||||| | Sbjct 944 TATTTT-CAGTTATAATGGTACGTATATGGTGACTCCTCGTAATATGTTTCAACCTAGAA 886 Query 21902 CAGCTACTACAGCTGACTTTGTGCAAAT-ACAATCTTGTGATGTTACCCTCTATAACATT 21960 | || | ||| || |||||||| || | |||||| || || | |||| | Sbjct 885 AACCTCAGATGAGTGATTTCGTGCAAATTACGAG-TTGTGAAGTGACATTTCTGAACACT 827 Query 21961 ACTTACAATAATATATC----TTTGGTCATACCAGACTTTGTGGATACCAACAAAACTAT 22016 || || | | || || | | || || || | | | || | ||||| ||||| Sbjct 826 ACATATACGAC-ATTTCAGGATATTGTGATT---GATTATATTGACATTAACAAGACTAT 771 Query 22017 TGAAGATATCATTTCTTCAATA----CCTAATAATACTGCGCCTAGTTTAGAAATA---- 22068 || ||||| || ||||| | |||| | || | ||| ||||| || Sbjct 770 TGCTGATATGCTTGAA-CAATATAACCGTAATTACACAACACCTGAATTAGATTTACAGC 712 Query 22069 --GCCAGTCTTAATCTGACTGTACTAAACCTGACGTCAGAGCTAGAACAATTAAAAGCCT 22126 | | | | || | ||| ||||||| || |||| |||| ||| | || | Sbjct 711 TGGAAATTTTCAACCAGACAAGGTTAAACCTAACTGCAGAAATAGACCAACTCGAACACA 652 Query 22127 CCACTGGCAATTTTACTCAAATTTCTCAGGAAATACAGGATTACATAAATAAACTCAATG 22186 | | ||| ||||| || | || ||| ||||| | ||||| | || || ||| Sbjct 651 GAGCAGACAACCTTACTATTATAGCACATGAACTACAGCAGTACATTGACAATCTTAATA 592 Query 22187 ACACTCTAGTTGACTTAGAGTGGCTCAACAGAGTAGAAACTTATGTTAAATGGCCATGGT 22246 | || || |||||| | || ||||||||||| | ||||||||||| |||||||| |||| Sbjct 591 AGACGCTTGTTGACCTTGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCTTGGT 532 Query 22247 GGGTGTGGCT 22256 || ||||| Sbjct 531 ATGTATGGCT 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83583034840350