Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016996.1 Length=26223 Score E Sequences producing significant alignments: (Bits) Value seq96645 163 5e-36 seq139329 84.2 4e-12 seq158249 80.6 4e-11 seq132367 80.6 4e-11 >seq96645 Length=1578 Score = 163 bits (180), Expect = 5e-36 Identities = 405/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 14645 TATGCAGAAGGTTACAACTGTTTTAGGTCCTCCAGGTACGGGTAAATCTACCTT-TGCTA 14703 || ||| || |||||||| | ||||||||| |||| |||||||| || || || || Sbjct 729 TAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATC-ACATTGTGTTA 671 Query 14704 TTGGTTTGGCTAAATATTTTCCAAACGCACGCATTTGTTATACAGCATCTTCTCATGCTG 14763 | ||||||| | |||| ||| | || | ||| ||| ||||||| ||| ||||| | Sbjct 670 TAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAG 611 Query 14764 CTATCGATGCTTTGTGTGAAAAAGCTTTTAAGACACTACCTGTTGAGCATTGTAGCCGCA 14823 || | |||||||| ||||||||||||| |||| | |||||| | ||| | | Sbjct 610 CTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGA 551 Query 14824 TAGTACCTACGCGTACTACGGTTGATTGTTTTCAGGATTTTGTCGTAAATAATACTACTT 14883 || ||||| | | | |||||||||| | || |||| |||||||| | | Sbjct 550 TAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATG 491 Query 14884 CACAATACATCTTTTCAACTATTAACGCTTTGCCAGATATAAAGTGTGATATAGTTGTTG 14943 ||||||| | |||| || |||| |||||||| || || ||||| || || |||| Sbjct 490 CACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGGTTG 431 Query 14944 TAGATGAGATTTCAATGCTAACTAATTATGAGCTTTCGTCTGTAAATGCTCGATTAGTTT 15003 | ||||| | |||||| || || ||||| || | ||||| | || | | Sbjct 430 TGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTGAGCT 371 Query 15004 ATAACCATATTGTTTACGTTGGTGATCCTTATCAATTGCCATCACCGCGTACTATGTTGA 15063 | || ||||||||||| || ||||| || | ||| | ||| |||| | || || | | Sbjct 370 ACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTA 311 Query 15064 CTACAGGT-CATTTGTCA-CCAGCTGATTATAATGTAGTTACTGATATAATGGTACATAC 15121 || ||| || | || || | || || ||||| || ||| | | || || | || Sbjct 310 ATAAGGGTACACT--CCAGCCTGAGGACTACAATGTTGTGACTCAGAGGAT-GTGTAAAC 254 Query 15122 T-GGTGCTGACGTTATGTTAGACACTTGTTATAGATGCCCTAAAGAAATTGTCGATACAG 15180 | || |||| || | || ||| ||||| |||||||| |||||||| | |||| Sbjct 253 TAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAG 194 Query 15181 TTTCTAAACTAGTATATGACAATAAGTTGAAAGCTGCTAAACCTTATTCCCGTCAGTGTT 15240 | ||| || || ||||| ||||| || | ||| || ||| | || ||||| | Sbjct 193 TCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAGTGCT 134 Query 15241 ATAAGA 15246 ||||| Sbjct 133 TTAAGA 128 >seq139329 Length=1076 Score = 84.2 bits (92), Expect = 4e-12 Identities = 231/352 (66%), Gaps = 8/352 (2%) Strand=Plus/Minus Query 13302 ATGATATTATCAGATGATGGTGTAGCTTGTATTGATACTGAGGCAGCTGCAAATGGTGTG 13361 ||||| || || ||||||||||||| |||| | | || |||| |||| Sbjct 585 ATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGATCTTGGTTAT 526 Query 13362 GTTGCAGATCTTAATGGTTTTAGAGACGTTTTGTTTTATCAGAATAATGTTTTTATGTCT 13421 || ||||| || || ||||| | | | | | ||||||||| ||||| ||||||||| Sbjct 525 GTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATGTGTTTATGTCT 466 Query 13422 GATTCAAAATGTTGGACTGAAACTGATATGACTAAAGGCCCTCATGAGTTCTGTTCTCAA 13481 | || |||||| ||| | ||| | | | || || || || || ||||| ||| Sbjct 465 ACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATTTTGTTCACAA 406 Query 13482 CATACTGTT----TTGACAGAGCATGAAGGTAAATCTTATTATTTACCATATCCTGATGT 13537 || || | ||| || || || ||| | | |||||||||| ||||| || Sbjct 405 CACACATTACAAATTGTAGGACCA-GATGGTGACT---ATTATTTACCTTATCCAGACCC 350 Query 13538 GTCTAGGATATTGGGTGCATGTATCTTTGTTGATGATATTAACAAAGCAGATCCAGTTCA 13597 ||||| || ||| ||| || | ||||||||||| ||| || |||| ||| Sbjct 349 ATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACAACGTTAT 290 Query 13598 AAACCTTGAGAGGTATATATCATTAGCTATTGATGCTTACCCACTTACTAAA 13649 | ||||| | ||| | || |||| |||||||| || ||||| || ||| Sbjct 289 CATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 >seq158249 Length=1012 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 22448 GAATTGCAGCAATATATTGATAATTTAAATAATACTCTAGTAGACCTTGAGTGGCTTAAT 22507 ||| | ||||| || ||||| ||| | ||||| || || || ||||| || ||||| || Sbjct 832 GAACTACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAAC 773 Query 22508 AGAGTTGAGACATATATTAAGTGGCCATGGTATATTTGGCTACTTAT 22554 || |||| || ||| | || |||||||||||| | |||||||| || Sbjct 772 AGGATTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCTACTAAT 726 >seq132367 Length=1893 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 22448 GAATTGCAGCAATATATTGATAATTTAAATAATACTCTAGTAGACCTTGAGTGGCTTAAT 22507 ||||| ||||| || || || ||| | ||||| || || || ||||| || ||||| || Sbjct 600 GAATTACAGCAGTACATAGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAAC 659 Query 22508 AGAGTTGAGACATATATTAAGTGGCCATGGTATATTTGGCTACTTAT 22554 || |||| || ||| | || |||||||||||| | |||||||| || Sbjct 660 AGGATTGAAACTTATGTAAAATGGCCATGGTATGTGTGGCTACTAAT 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83570269199290