Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_017083.1 Length=31100 Score E Sequences producing significant alignments: (Bits) Value seq139329 168 1e-37 >seq139329 Length=1076 Score = 168 bits (186), Expect = 1e-37 Identities = 554/847 (65%), Gaps = 38/847 (4%) Strand=Plus/Minus Query 15259 AAATTCTATGGCGGGTGGGATGATATGCTCCGCCGCCTTATTAAAGATGTTGATAATCCT 15318 ||||||||||| || ||||| ||||||| | | || ||||| |||||| | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 15319 GTACTTATGGGTTGGGATTATCCAAAATGTGATCGTGCTATGCCAAACATACTACGTATT 15378 | ||||| ||||| |||||||| || || |||||| |||| || || |||| || Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 15379 GTTAGTAGTTTGGTATTAGCGCGAAAACATGATGCATGTTGTACGCAAAGCGATAGGTTT 15438 | | | ||||||| | || || || |||||||| || || |||||||| Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 15439 TACCGACTTGCGAATGAATGTGCACAAGTGTTGAGCGAGATTGTTATGTGT---GGTGGC 15495 || ||||| | ||||| | || ||||| | | ||| |||| ||| |||||| Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 15496 TGTTATTATGTTAAACCTGGCGGTACTAGTAGTGGTGATGCAACCACTGCCTTTGCTAAC 15555 | |||| | |||||||| ||||| | ||||||||| | || || || | ||||||| Sbjct 834 TTTTATA---TAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAAC 778 Query 15556 TCAGTTTTTAACATATGTCAAGCTGTTTCAGCCAATGT----ATGCTC--ATTAATGG-- 15607 |||| ||||||||| | |||||||||||| || ||||| | |||| | | | | Sbjct 777 TCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGAT 718 Query 15608 -CATGCAATGGAAATAAGATTGAAGATTTGAGTATTC-GCGCTCTTCAAAAGCGTTTATA 15665 || || | || || || || | | || | |||| ||| |||| Sbjct 717 TCAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGC-------AAG---ATATA 668 Query 15666 CTCACATGTG-TATAGAAGTGACACTGTTGA-CCCAACATTTGTCACAGAGTATTATGAA 15723 | ||| || || | ||| || ||| || | || ||||| || |||| | Sbjct 667 -TGACAATTGTTACCGTAGTAGCAGTGTGGATGACGAC-TTTGTAGTCGAATATTTTAGT 610 Query 15724 TTTTTAAATAAGCATTTTAGTATGATGATTCTATCTGATGATGGTGTTGTGTGTTATAAT 15783 | ||||| ||||| || |||||||||| | |||||||||||||| || ||||| || Sbjct 609 TATTTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAAC 550 Query 15784 TCTGATTATGCGTCCAAAGGGTATATTGCTAATATAAGTGCCTTTCAACAGGTGTTATAT 15843 |||||||| || ||| | || | || |||| ||| | ||||| Sbjct 549 AAAGATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATAT 490 Query 15844 TACCAAAATAACGTTTTTATGTCTGAAGCCAAATGTTGGGTTGAAAATGACATAAACCAT 15903 || || || || || ||||||||| ||| || |||||||| ||| || | || Sbjct 489 TATCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTG 430 Query 15904 GGACCTCATGAATTTTGTTCACAACATACAATGC---TAGTTAAAATGGATGGTGATGAT 15960 ||||| || ||||||||||||||||| ||| | | | || | |||||||| || Sbjct 429 GGACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTAT 370 Query 15961 GTCTACCTTCCATATCCTGATCCTAGTCGTATTCTAGGAGCTGGATGTTTTGTAGATGA- 16019 || | || ||||| || || | | ||| | ||| || |||||| ||||| Sbjct 369 ---TATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGAC 313 Query 16020 TTTGTTAAAGACTGATAGCGTTCTTTTGATAGAGCGATTTGTAAGTCTTGCAATAGATGC 16079 ||||| ||||| || | |||| | || | || || | ||| || ||||| ||||| Sbjct 312 ATTGTT-AAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGC 254 Query 16080 TTATCCA 16086 |||||| Sbjct 253 ATATCCA 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99124374452820