Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_018871.1 Length=28494 Score E Sequences producing significant alignments: (Bits) Value seq96645 722 0.0 seq139329 527 1e-145 seq132367 113 8e-21 seq92323 104 4e-18 >seq96645 Length=1578 Score = 722 bits (800), Expect = 0.0 Identities = 1115/1582 (70%), Gaps = 16/1582 (1%) Strand=Plus/Minus Query 15350 TATGAAAAGTCAGCCATACTACAGTCGGCTGGTTTATGTGTAGTGTGTGGTTCTCAAACT 15409 ||||||||||| | | | || | |||||| | ||||| || |||||||| |||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15410 GTACTTCGTTGTGGTGACTGTTTACGACGTCCCATGTTGTGTACAAAGTGTGCTTATGAC 15469 || | ||||| || ||||||||| || | || | | || || ||||| || || ||| Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15470 CACGTGATTGCCACACCTCATAAATTCATATTGGCTATAACGCCCTATGTGTGTTCATAT 15529 || || || | ||| || |||||||| || |||| || || ||||||||| ||| Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15530 TCTGGCTGTAATGTTAATGATGTCACTCAACTTTATCTTGGTGGTCTTAGTTACTATTGT 15589 ||| |||| |||||||||||| || || | | | | || ||||||| || |||||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15590 GCTGAACACAAACCCAGACTTTCATTCCCTCTTTGTTCTGCTGGCAATGTTTTTGGTCTT 15649 |||| |||||||| | | |||||||| || ||| || ||| ||||| |||||||| Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15650 TACAAAGCTTCAGCCACTGGTTCTCCAGATGTTGAAATTTTCAACACACTGGCAACTTCT 15709 ||||| | || | ||||||| ||||||||| |||||||| ||| || ||| Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15710 GATTGGACAGATGTTAGAG-ATTATAAAATTGCCAATGAAGCTAAGGATTCTCTTAGACT 15768 || ||||| |||| |||| |||||||| |||| ||| | | ||| || ||||| | | | Sbjct 1214 GACTGGACCAATGT-AGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAAT 1156 Query 15769 ATTTGCAGCAGAAACTATTAAAGCAAAGGAGGAAAGTGTTAAGTCTTCTTATGCTTGTGC 15828 || || || |||||| | ||||||||||||||| |||||| || ||||||| ||| Sbjct 1155 TTTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGC 1096 Query 15829 AACACTTAAAGAAGTTATAGGACCTAAAGAATTACTGCTAAGTTGGGAGTGTGGTAAAGT 15888 | | | || || ||| | |||||||| ||| | | || ||||| | ||| | Sbjct 1095 CATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGAT 1036 Query 15889 TAAACCACCCCTCAACAGAAACAGTGTTTTTACATGTTTTCATATTACAAAAGACTCCAA 15948 |||||| || || |||||||| |||||| ||||||||||| || | || || | || Sbjct 1035 TAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAA 976 Query 15949 ATTTCAAGTAGGTGAATTTGTTTTTGAAAAAGTTGATTATGGTTCTGATGCTGTTAGTTA 16008 | |||| ||||||||||||| ||||| | || |||||| |||| ||||| || Sbjct 975 AATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTA 916 Query 16009 TAAGTCCACTTCTACGAGTAAGTTGTCTCCTGGTATGGTGTTTGTGTTAACATCTCATAA 16068 ||| ||| || | |||| || | || |||||| | |||||||| ||||||||||| Sbjct 915 TAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAA 856 Query 16069 TGTACAGCCGCTTCGAGCACCTACCA---TAGCAAACCAGGAACGCTACTCATCAATTCA 16125 ||| || ||| || ||| || ||| ||||| || ||| | || Sbjct 855 TGTGAGTCCACTTAAAG---CTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATC 799 Query 16126 CAAATTGTACCCGTCCTTCAACATTGCCGACGCTTACTCTACGCTGGTACCTTATTATCA 16185 ||| | || || | || ||||| || || || || | || |||| ||||| ||||| Sbjct 798 CAAGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCA 739 Query 16186 AATGATAGGTAAACAGCGTATAACTACAATACAGGGACCTCCTGGTAGTGGTAAGTCACA 16245 |||||| ||||| || | || || || || || ||||||||||||||||| ||||| Sbjct 738 AATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACA 679 Query 16246 TTGTGTTATAGGTCTGGGTTTGTACTACCCTGGTGCACGCATAGTTTTCACAGCATGCTC 16305 ||||||||||||| |||||||||| || ||| || | || |||| ||||||||| || Sbjct 678 TTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTC 619 Query 16306 TCATGCAGCTGTTGACTCTTTGTGTGTTAAGGCAT-CAACTGCTT--ATGTAAATGACCG 16362 ||||||||||| || |||| |||| || || | ||| ||| |||| ||| Sbjct 618 ACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGT---TGATAA 562 Query 16363 CTGTTCTAGGATTATTCCTGCTCGTGCTAGAGTGGATTGTTTCAGTGGTTTTAAGTCTAA 16422 ||||| ||||| || ||| | ||||| ||||||| | |||||||| |||| Sbjct 561 ATGTTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAA 502 Query 16423 TAACAATAGTGCTCAGTACCTCTTTTCCACTGTCAATGCACTACCTGAATGTAATGCTGA 16482 ||| | | ||| || || | |||| ||| || ||||| | |||||| ||| ||| Sbjct 501 TAATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGA 442 Query 16483 CATAGTTGTGGTGGATGAGGTTTCGATGTGCACGAACTATGATTTGTCTGTGATTAACCA 16542 ||| || || |||||||| || || ||||| || ||||||||| | ||| || || Sbjct 441 CATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAG 382 Query 16543 GCGTTTGTCTTACAAACATATTGTTTACGTTGGTGACCCTCAACAATTGCCTGCGCCTAG 16602 | || ||||||||||||||||| || |||||||| |||||| | || || ||||| Sbjct 381 TAGACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAG 322 Query 16603 AACCATGATCTTGCGTGGTGTTTTAGAACCTAAGGATTATAATGTTGTCACACAAAGAAT 16662 |||| |||| ||| | | ||| |||| || |||||||| || || || || Sbjct 321 AACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGAT 262 Query 16663 GTGTGCTGTTGGTCCTGATGTCTTTTTACACAAGTGTTATCGTTGTCCAGCCGAGATTGT 16722 |||| | || |||||||| ||||| ||||| ||||| | || ||||| || ||||| Sbjct 261 GTGTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGT 202 Query 16723 GAAAACAGTTTCTGAGATGGTTTATGATAACAAGTTTGTGCCTGTACATCCAGAGAGTAA 16782 |||||||| |||| | |||||||| || || ||| | ||||| | || ||| || Sbjct 201 TAAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAA 142 Query 16783 ACAGTGTTTTAAGCTCTTCTGT-AAAGGCAATGTGCATGTTGACAATGGTTCTAGCATTA 16841 ||||| |||||| | || ||| |||||| | || || |||| | ||| || | Sbjct 141 GCAGTGCTTTAAGATGTT-TGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTATAA 83 Query 16842 ACCGTAAGCAATTAGATGTTGTCAAATTATTTTTGGCTAAAAATCCATCTTGGTCTAAGG 16901 || |||||| |||| |||||||| |||||| || | |||||| ||| ||| | Sbjct 82 ACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAG 23 Query 16902 CAGTGTTTATTTCACCATACAA 16923 | || || || ||||| || || Sbjct 22 CTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 527 bits (584), Expect = 1e-145 Identities = 765/1079 (71%), Gaps = 6/1079 (1%) Strand=Plus/Minus Query 14352 CTAAATTTTATGGTGGTTGGGACAACATGTTAAACACGCTTATTAATGGTGTTGAAAACC 14411 ||||||| |||||||| |||||||| ||| |||| | | || | ||| || || Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 14412 CTTGTCTTATGGGTTGGGACTACCCTAAGTGTGACAGAGCATTGCCTAACATGATACGCA 14471 |||| | ||||| |||||||| || ||||| ||| | || |||||||| |||||||| | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 14472 TGATCTCTGCTATGATACTTGGTTCCAAACACACAACATGTTGTACTACTGATGAAAGAT 14531 || ||||| ||| || | ||||| || |||| |||||||| | ||| || | Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 14532 ATTATCGTTTGTGCAATGAGTTGGCCCAAGTGTTAACAGAGGTTGTGTATTCTAATGGTG 14591 ||||| | | |||||||| || ||||| | ||||||||||| ||| || |||| Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 14592 GTTTTTATTTTAAACCTGGTGGTACTACCTCAGGTGATGCTTCTACAGCCTATGCTAACT 14651 | |||||| | |||||||||||||| || ||||| | | ||||||| |||||||||| Sbjct 836 GCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACT 777 Query 14652 CAGTCTTTAACATTTTCCAGGCAGTCAGTTCTAACATTAACAGATTGTTGACTATCGACA 14711 ||| |||||||| || || || || | |||| |||||| | || | || Sbjct 776 CAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATT 717 Query 14712 GCAATGTTTGTAATAATGTTAGTGTCAAAACTCTGCAAAGAGAGTTGTATGACAACTGCT 14771 || ||||| ||||||| || || | | || | || | |||||||| || | Sbjct 716 CAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 14772 ACAG--GTCATCAAGTGTTGACGAACAATTCATAGATAAATATTATTGCTATTTACGCAA 14829 || | || | || |||| || || | || ||| |||||| | | |||||| | || Sbjct 656 ACCGTAGT-AGCA-GTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAA 599 Query 14830 ACATTTTTCTATGATGATTTTGTCTGATGATGGTGTAGTCTGTTACAACAAAGATTACGC 14889 || || |||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 598 GCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGC 539 Query 14890 AGACCTTGGTTATGTAGCAGATATTAGTGCATTCAAAGCTACATTGTACTATCAGAACAA 14949 || ||||||||||||||||| ||| |||| || || || || | || ||||||||||| Sbjct 538 TGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAA 479 Query 14950 TGTCTTTATGAGCACTTCCAAGTGTTGGGTTGAACCTGACATTACTAAGGGTCCACATGA 15009 ||| |||||| || | ||||||||||| ||||| || ||| | ||| ||||| || Sbjct 478 TGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGA 419 Query 15010 GTTTTGTTCACAACACACTATGCAGATTGTTGATGAAAATGGTAAATATTATTTACCCTA 15069 ||||||||||||||||| | || ||||| | | ||||| | ||||||||||| || Sbjct 418 ATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTA 359 Query 15070 TCCTGATCCATCTAGGATATTGTCTGCAGGTGTTTNNNNNNNNNNNNNNNNTAAAACTGA 15129 ||| || |||||||| || ||||| |||||||||| ||| || || Sbjct 358 TCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGA 299 Query 15130 CGCTGTCATTTTGCTTGAACGCTATGTTTCATTGGCTATTGACGCTTACCCTTTGTCTAA 15189 | || || |||||||||| ||||| || | || ||||| || || || | | || Sbjct 298 CAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAA 239 Query 15190 ACACCCAAATCCTGAGTATCGTAAAGTATTTTATGTACTTTTAGACTGGGTTAAACATTT 15249 |||||| || |||| || | |||||||| |||| | | | |||||||||||||| | Sbjct 238 ACACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCT 179 Query 15250 GCATAACACACTTAATCAAGGTGTTTTAGAATCTTTCTCTGTCACATTACTAGAAGACAC 15309 || || || || ||| ||| | | || || ||||||||||| | |||| || Sbjct 178 ACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGA-TG 120 Query 15310 GTC-TTCTAAGTTCTGGGACGAGAGTTTCTATGCCAATATGTATGAAAAGTCAGCCATAC 15368 ||| ||| || ||| ||| ||||| |||| | | || || ||||| | | Sbjct 119 GTCAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTT 60 Query 15369 TACAGTCGGCTGGTTTATGTGTAGTGTGTGGTTCTCAAACTGTACTTCGTTGTGGTGAC 15427 | || | ||||| | ||||| || |||||||| |||||||| | ||||| || ||| Sbjct 59 TGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGAC 1 >seq132367 Length=1893 Score = 113 bits (124), Expect = 8e-21 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 23851 GCTTTTGTTACTCAAACTCTAACTAAGTCAGCTGAAGTTAAACAGAGCAGGCTTTTGGCT 23910 |||| ||| | |||||| | || ||| |||||||| || || |||| |||| Sbjct 3 GCTTATGTGTCGCAAACTTTGACCCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTGGCA 62 Query 23911 CAACAAAAGGTGAATGAGTGTGTTAAATCACAATCAAATCGGTTTGGTTTTTGTGGCAAT 23970 |||| || ||||| || || ||||||||||| || ||| |||||||||||| ||| Sbjct 63 ATGGAAAAAGTTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTTGTGGAAAT 122 Query 23971 GGTACACATTTGTTTTCCATTGTTAACAATGCACCTAATGGTTTGATGTTTTTCCATACC 24030 || ||||| |||| || |||| || ||||||| |||||||| | || || || || Sbjct 123 GGAACACACCTGTTCTCACTTGTCAATTCTGCACCTGATGGTTTGCTCTTCTTTCACACA 182 Query 24031 GTTTTAGTTCCTACTGTTTACGTCACAGTTTCTGCATGGGCTGGTGTTTGTTTTAAT 24087 ||| | ||||||| | | | ||| |||||||| | ||| | ||| ||||| Sbjct 183 GTTCTGCTTCCTACCGAATGGGAAGAAGTGACTGCATGGTCAGGTATATGTGTTAAT 239 >seq92323 Length=1240 Score = 104 bits (114), Expect = 4e-18 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23848 AATGCTTTTGTTACTCAAACTCTAACTAAGTCAGCTGAAGTTAAACAGAGCAGGCTTTTG 23907 ||||||| ||| ||||||| ||||| ||| |||||||| || || |||| | Sbjct 1222 AATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTT 1163 Query 23908 GCTCAACAAAAGGTGAATGAGTGTGTTAAATCACAATCAAATCGGTTTGGTTTTTGTGGC 23967 || |||| || ||||||||||| |||||||| || || ||| ||| || ||||| Sbjct 1162 GCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGATAGGTATGGGTTCTGTGGA 1103 Query 23968 AATGGTACACATTTGTTTTCCATTGTTAACAATGCACCTAATGGTTTGATGTTTTTCCAT 24027 ||||| ||||| | || || |||| || ||||||| ||||| | | || || || Sbjct 1102 AATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGATGGTCTACTTTTCTTTCAC 1043 Query 24028 ACCGTTTTAGTTCCTAC 24044 || ||||| ||||||| Sbjct 1042 ACAGTTTTGCTTCCTAC 1026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90817961911105