Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_019843.3 Length=30119 Score E Sequences producing significant alignments: (Bits) Value seq139329 237 3e-58 seq96645 203 6e-48 >seq139329 Length=1076 Score = 237 bits (262), Expect = 3e-58 Identities = 576/855 (67%), Gaps = 32/855 (4%) Strand=Plus/Minus Query 15188 AAGTTCTACGGTGGCTGGGATTTCATGCTTAAAACATTGTACAAAGATGTTGATAATCCG 15247 || ||||| ||||||||||| ||||| || | ||| ||||| |||||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 15248 CATCTTATGGGTTGGGATTACCCTAAGTGTGATAGAGCTATGCCTAATATGTGTAGAAT- 15306 | | ||||| ||||| || || ||||| || | ||| ||||||||||| |||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 15307 -CTTCGCTTCACTCATATTAGCTCGTAA--ACATGGCACTTGTTGTACTACA-AGGGACA 15362 |||| | | | |||| | | ||| |||| | ||||||||| ||| || || | Sbjct 954 GCTTC--TGCCATGGTATTGGGTTCTAAGCACATTGG--TTGTTGTAC-ACATAGTGATA 900 Query 15363 GATTTTATCGCTTGGCAAATGAGTGTGCTCAGGTGCTAAGCGAATATGTTCTATGTGGTG 15422 | || ||||| | | ||||||| ||||| || || | || ||| | ||| | Sbjct 899 GGTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAG 840 Query 15423 GTGGTTACTACGTCAAACCTGGAGGTACCAGTAGCGGAGATGCCACCACTGCATATGCCA 15482 |||| | || | |||||||| ||||| | ||| || || | || || || ||||| | Sbjct 839 GTGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTA 780 Query 15483 ATAGTGTCTTTAACATTTTGCAGGCGACAACTGCTAATGTCAGT--GCACTTATGGGTGC 15540 | | |||||||| || || || |||||||||| | || |||| | || Sbjct 779 ACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGT-- 722 Query 15541 TAATGGCAACAAGATTGTTGACAAAGA---AGTTAAAGACATGCAGTTTGATTTGTATGT 15597 | || |||| ||| |||| | |||||| | ||| ||| | | |||| Sbjct 721 TGATTCAAACACC--TGTA-ACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGA 665 Query 15598 CAATGTTTACAGGAGCACTAGCCCAGACCCCAAATTTGTTGATAAATACTATGCTTTTCT 15657 |||| |||| | || | || || | | ||||| | |||| | | || | | Sbjct 664 CAATTGTTACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTT 605 Query 15658 TAATAAGCACTTTTCTATGATGATACTGTCTGATGACGGTGTCGTTTGCTATAATAGTGA 15717 | |||||||| ||||||||||| |||||||||| ||||| ||||| || || | || Sbjct 604 AAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGA 545 Query 15718 TTATGCAGCTAAGGGTTACATTGCTGGAATACAGAATTTTAAGGAAACGCTGTATTATCA 15777 |||||| | | ||||| | || | || |||||||| || || |||||||| Sbjct 544 TTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCA 485 Query 15778 GAACAATGTCTTTATGTCTGAAGCTAAATGCTGGGTGGAAACCGATCTGAAGAAAGGGCC 15837 ||||||||| ||||||||| |||||| || ||||| ||| | ||||| || || || Sbjct 484 GAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACC 425 Query 15838 ACATGAATTCTGTTCACAGCATACGCTTTATATTAAGGATGGCGACGATGGTTACT-TCC 15896 ||| ||||| |||||||| || || | | ||| | | | | | |||||| ||| | Sbjct 424 ACACGAATTTTGTTCACAACACACATTACAAATT--GTAGGACCA-GATGGTGACTATTA 368 Query 15897 TT--CCTTATCCAGACCCTTCAAGAATTTTGTCTGCCGGTTGCTTTGTAGATGATATCGT 15954 || |||||||||||||| || ||||||||||| || ||| ||||| ||||| || || Sbjct 367 TTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGT 308 Query 15955 TAAGACTG---ACGGTACACTCATGGTAGAGCGGTTTGTGTCTTTGGCTATAGATGCTTA 16011 |||||| | ||| || ||||| | || || | |||||| | || || ||||| || Sbjct 307 TAAGACAGACAACGTTA---TCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATA 251 Query 16012 CCCTCTCACAAAGCA 16026 || |||||||| || Sbjct 250 TCCACTCACAAAACA 236 >seq96645 Length=1578 Score = 203 bits (224), Expect = 6e-48 Identities = 385/557 (69%), Gaps = 10/557 (2%) Strand=Plus/Minus Query 17042 ACTGTTCAGGGACCACCTGGCACTGGCAAAAGTCATTTTGCTATAGGGTTAGCGATTTAC 17101 ||| | || || || ||||| | ||| ||| |||| || |||||| || | | || Sbjct 713 ACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAGGTTTGGGTTTGTAT 654 Query 17102 TACCCTACAGCACGTGTTGTTTATACAGCATGTTCACACGCAGCTGTTGATGCTTTGTGT 17161 || ||| ||| | ||||||| |||||||||||||| |||||||| |||||||| ||| Sbjct 653 TATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTTTATGT 594 Query 17162 GAAAAAGCTTTTAAATATTTGAACATTGCTAAATGTTCCCGTATCATTCCTGCAAAGGCA 17221 |||||||||| || | || || ||| ||||||||| | || || ||| ||||| Sbjct 593 GAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCT-CAAAGAAT 535 Query 17222 C-GTGTTGAGTGCTATGACAGGTTTAAAGTTAATGAGACAAATTCTCAATATTTGTTTAG 17280 | | ||||| || ||| | |||||| |||| | || ||| | |||||||||||| | Sbjct 534 CAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGTTTTG 475 Query 17281 TACTATTAATGCTCTACCAGAAACT-TCTGCCGATATTCTGGTGGTTGATGAGGTTAGTA 17339 || |||||||| | || ||| || ||| || ||| |||| || ||||| || | Sbjct 474 CACAGTTAATGCTTTGCCTGAAGCTAACTG-TGACATTGTGGTTGTGGATGAAGTGTCAA 416 Query 17340 TGTGCACTAATTATGATCTTTCAATTATTAATGCACGTATTAAAGCT--AAGCACATTGT 17397 |||| || || |||||||| |||| ||| | | |||| || || ||||| Sbjct 415 TGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT--GAGCTACAAACATATTGT 358 Query 17398 CTATGTAGGAGATCCAGCACAGTTGCCAGCTCCTAGGACTTTGTTGACTAGAGGCACATT 17457 |||||||| || ||| ||| | ||||| ||||| || ||| | | || || ||| | Sbjct 357 TTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACACT 298 Query 17458 GGAACCAGAAAATTTCAATAGTGTCACT-AGATTGATGTGTAACTTAGGTCCTGACATAT 17516 | || || | | |||| ||| ||| ||| ||||||||| |||| ||||| ||| Sbjct 297 CCAGCCTGAGGACTACAATGTTGTGACTCAGA-GGATGTGTAAACTAGGACCTGATGTAT 239 Query 17517 TTTTAAGTATGTGCTACAGGTGTCCTAAGGAAATAGTAAGCACTGTGAGCGCTCTTGTCT 17576 |||| | || ||||| || || ||||| || | || || |||||||| | Sbjct 238 TTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGTTT 179 Query 17577 ACAATAATAAATTGTTA 17593 | | |||||||| ||| Sbjct 178 ATGAGAATAAATTTTTA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95993828726910