Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_022103.1 Length=28035 Score E Sequences producing significant alignments: (Bits) Value seq96645 544 1e-150 seq139329 502 4e-138 seq158249 84.2 4e-12 seq140054 84.2 4e-12 >seq96645 Length=1578 Score = 544 bits (602), Expect = 1e-150 Identities = 1084/1590 (68%), Gaps = 32/1590 (2%) Strand=Plus/Minus Query 15265 TATGAACGCTCTGCAGTTTTGCAGTCGGCAGGTCTGTGTGTTGTTTGTTCGTCTCAAACT 15324 |||||| ||| | || ||||| | || ||| |||||||||||||| || |||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15325 GTATTACGGTGTGGTGACTGTCTACGTAGGCCTATGCTTTGTACTAAATGTGCATATGAT 15384 || ||||| || || |||||| || | || ||| | || || || || || || || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15385 CATGTGGTTTCTACCAGTCATAAGTTTATATTGGCTATAACACCGTATGTTTGTTGTGCT 15444 ||||| | ||| | || || || || || |||| ||||||||||| ||| | | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15445 ACTGGCTGTGGTGTTAATGACGTTACCAAGCTCTACCTTGGTGGTTTGAGTTATTGGTGT 15504 | ||| ||| ||||||||| ||||| || | | | || ||| | | |||| ||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15505 ATAGACCACAAACCTAGGTTAGCCTTTCCATTATGTTCTGCTGGCAATGTTTTTGGTTTG 15564 | || |||||||| ||| | || || | ||| || ||| ||||| |||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15565 TACAAAAATTCTGCAGTTGGTTCACCTGATGTGGACCAATTTAACCAACTAGCTACTTCT 15624 ||||| | | |||| ||||||| ||||| || | || ||| |||| ||| ||| Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15625 GACTGGACTGATGTTCGTGATTACAAATTAGCCAATGATGTCAAGGACTCATTGCGTTTG 15684 |||||||| |||| ||||| ||| | || ||| | || || || || || | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15685 TTTGCAGCAGAAACTATTAAGGCTAGTGAGGAAAATATTAAGTCTTCTTATGCCTGTGCT 15744 || || || |||||| | || || | |||||| | |||| || ||||| | ||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15745 ACAATCAGGGAAGTTATTGGTCCTAAAGAGCTTATTTTAAGTTGGGAGGCTGGTAAGACA 15804 | | | | ||| ||| | || ||||| || || | | ||||| | ||||| Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATT 1035 Query 15805 AAGCCTGCTCTTAATCGTAACTCAGTCTTTACTGGTTTTCATATTACTAAGAATATGAAG 15864 || ||| | ||||| | || || || || || ||||||| || | ||| ||| || Sbjct 1034 AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAA 975 Query 15865 TCTCAGATAGGCGAGTTTACGTTTGAGAAGTCTGACTATGATAGTGATGCTGTCA--TAT 15922 |||| |||| || ||| ||||||| |||| || |||| ||||||| |||| ||| Sbjct 974 ATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTAT 915 Query 15923 ACAAGT-CTACCACCACGGTTAAATTACAACCTGGTATGGTCTTTGTGTTGACATCTCAC 15981 | |||| ||| ||| || ||| | ||| |||||| | ||||||||||||||||| Sbjct 914 AAAAGTACTAGCACTAC---TAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCAT 858 Query 15982 AATGTTCAGTC---TTTACGTGCCCCAACTATT--GCCAATCAGGAACGTTATGCTAACC 16036 ||||| |||| || | | | ||| || | ||| || || || || | Sbjct 857 AATGTG-AGTCCACTTAAAG----CTAACATTTTAGTCAACCAAGAGAAGTACAATACCA 803 Query 16037 TTGTTAAGTTGAGGCCTGCTTTTAACGTACCTCCTGATTACGCTAATCTTGTGGCCTATT 16096 | ||| | ||| | |||||| || | | || | | | ||| | || | Sbjct 802 TATCCAAGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACT 743 Query 16097 ATCAAATGATAGGTCACCAGAAGATTACCACAATCCAAGGTCCTCCTGGTAGTGGTAAAT 16156 |||||||||| ||| | || || |||| || |||||||||||||||||||||||||||| Sbjct 742 ATCAAATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAAT 683 Query 16157 CTCATTGCGTTATTGGCTTAGGATTGTACTACCCTGGTGCTAGAATCGTTTATACTGCAT 16216 | ||||| ||||| || || || ||||| || ||| |||||||| ||||| || |||| Sbjct 682 CACATTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCAT 623 Query 16217 GTTCTCATGCTGCAGTTGATTCTTTGTGTTGCAAGGCAGCCACTGCTTTTAGTGCCGATA 16276 |||| ||||| || || ||| |||| ||| || || ||| |||| || |||| Sbjct 622 GTTCACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATA 563 Query 16277 GGTGTTCCAGAATTATACCTCAACGTGCTCGTGTGGAGTGTTATTCGGGTTTTAAACCTA 16336 ||||| || || ||||||||| | | || || |||||| |||||||||||||| Sbjct 562 AATGTTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTA 503 Query 16337 ATAACACTACTGCACAGTACATATTTTCTACTGTTAATGCATTGCCTGAGTGTGCCACTG 16396 |||| || | |||||| || | |||| || |||||||| |||||||| | | || Sbjct 502 ATAATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTG 443 Query 16397 ATATCGTCGTTGTTGATGAAGTTTCAATGTGCACTAATTATGAGCT---TTCTATAATTA 16453 | || || ||||| |||||||| |||||||| || || ||||| || | ||||| || Sbjct 442 ACATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATA 383 Query 16454 ACCAACGTGTTAGTTATAAGCACATAGTGTATGTTGGTGACCCACAACAATTGCCAGCAC 16513 || | || || || || || || ||||| ||||||||||||||| | ||||||| Sbjct 382 GTAGAC---TGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCAC 326 Query 16514 CACGCATAATGATAACGCGTGGTGTGCTGGAACCTAGCGATTATAATGTTGTCACCCAGC 16573 | | | |||| | ||| || | ||| || || |||||||| || ||| Sbjct 325 CTAGAACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGA 266 Query 16574 GCATGTGTGCTATTAAG-CCTGACATTTTCTTGCATAAGTGTTATCGCTGTCCTGCTGAG 16632 | |||||| | || | ||||| | || ||||| || ||||| | || || ||||| Sbjct 265 GGATGTGT-AAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAA 207 Query 16633 ATTGTTGACACTGTTTCTGAGATGGTTTATGAAAACCAGTTCAAACCTGTTAACAAAGCA 16692 |||||| | || || |||| | |||||||| || | || |||||| ||| | | Sbjct 206 ATTGTTAAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTG-A 148 Query 16693 AGCAAA-CAGTGCTTCAAAAT-CATGTGTAAGGGTAATGTC--ATGGTAGATAATGGTTC 16748 |||| |||||||| || || ||| |||| || || || | | ||| ||| Sbjct 147 GTCAAAGCAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTC 88 Query 16749 AAGTATTAACAGGAGGCAGCTGGAGGTTGTTAAAATGTTTTTGGCAAAGAATCCTAGTTG 16808 ||| |||| | ||| || |||||||| || ||||| ||| | ||||| || || Sbjct 87 ---TATAAACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATG 31 Query 16809 GCGTAATGCTGTTTTTATTTCACCCTACAA 16838 |||||| |||||||| || |||||||| || Sbjct 30 GCGTAAAGCTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 502 bits (556), Expect = 4e-138 Identities = 763/1082 (71%), Gaps = 12/1082 (1%) Strand=Plus/Minus Query 14267 CTAAGTTTTATGGTGGTTGGGATGCCATGCTTAAGACTCTTATACATGGTGTTGAAAATC 14326 |||| || |||||||| ||||| ||||| |||| | || | | ||| || ||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 14327 CTCATCTAATGGGGTGGGACTATCCGAAGTGTGATAGAGCTCTACCCAATATGGTACGGA 14386 | | | ||||| ||||||||||| ||||| || | ||| | || |||||| |||| | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 14387 TGATTTCTGCTATGATATTGGGTTCTAAGCATGTTACATGTTGTACTGCTAGTGATAGGT 14446 || |||||| ||| |||||||||||||||| || |||||||| ||||||||||| Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 14447 TTTTCAGATTGGCTAATGAGCTAGCACAGGTTTTGACTGAGGTTGTCTACTCTAATGGTG 14506 | | || | |||||||| |||| || || | || |||||||| | | || |||| Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 14507 GTTTTTATCTCAAACCTGGTGGCACAACTTCTGGTGATGCTACTACAGCATATGCCAATT 14566 | |||||| | ||||||||||| |||||| |||||| | ||||||||| ||||| || | Sbjct 836 GCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACT 777 Query 14567 CTGTTTTTAACATCTTTCAGGCTGTCAGTGCTAATGTGAATCGGTTACTAAGAGTTGATA 14626 | | ||||||||||||||| ||||| ||||||||| || | | || |||||||| Sbjct 776 CAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATT 717 Query 14627 GTAATCTGTGCAATAATCTCGACGTAAGAGACCTACAACGTAGACTCTATGAGTGTTGTT 14686 || || || ||| | || | | | |||| || | | ||||| ||||| Sbjct 716 CAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 14687 ATAGGTCTTCTACTGTAGATGATAATTTTGTTAATGATTACTATGGTTTTCTTAGGAAGC 14746 | | | | ||| ||||| | ||||| || || | | ||| | | || |||| Sbjct 656 ACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGC 597 Query 14747 ATTTTTCTATGATGATATTATCAGACGATGGTGTTGTTTGCCATAACAGCGAGTATGCTC 14806 | || ||||||||||| || || || |||||||| ||||| | |||| || |||||| Sbjct 596 ACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTG 537 Query 14807 AGCTTGGTTATGTAGCAGATCTTAATGCCTTCAAGTCTGTGCTATATTATCAGAATAATG 14866 | ||||||||||||||||| || ||| || ||| | |||||||||||||| |||| Sbjct 536 ATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATG 477 Query 14867 TGTTTATGAGTGAGTCTAAATGTTGGGTTGAACCCGATGTTAATAAAGGACCTCATGAGT 14926 |||||||| | |||| |||||||| ||||| ||| ||||| ||||| || || | Sbjct 476 TGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAAT 417 Query 14927 TTTGCTCACAGCACACTATGCAGATAACTGATAAG----GATGGTTCTTACTTTCTGCCT 14982 |||| ||||| ||||| | || || || || | |||||| || | | | ||| Sbjct 416 TTTGTTCACAACACACATTACA---AATTG-TAGGACCAGATGGTGACTATTATTTACCT 361 Query 14983 TATCCAGATCCCTCTAGAATTTTGTCAGCAGGCGTTTTTGTGGACGATGTTGTTAAGACA 15042 |||||||| || |||||||||||||||||||| |||||||| || || ||||||||||| Sbjct 360 TATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACA 301 Query 15043 GACCCTGTCATTCTTTTAGAGCGTTATGTTTCATTGGCTATAGATGCCTACCCTTTGTCC 15102 ||| || || | | || |||||||| || | || || ||||| || || | | Sbjct 300 GACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACA 241 Query 15103 AAACATGAAAACCCTGAGTATCAGCGTGTCTTCTATGTATTATTGGACTGGGTTAAACAT 15162 ||||| || |||| || || || ||||||| ||| | |||||||||||||| Sbjct 240 AAACACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACAC 181 Query 15163 CTTAATAAAACTTTAAACCAAGGCGTATTAGATGCGTTCTCTATCGAAATGCTAGAGGA- 15221 || | || ||| |||| || || | ||| | |||||| || ||| ||||||| Sbjct 180 CTACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGAT 121 Query 15222 -CTCAACTTGTAAGTTTTGGGATGAAAAGTTTTATTCTAACATGTATGAACGCTCTGCAG 15280 |||| ||| |||||| ||| |||| || | | | || || ||| | | Sbjct 120 GGTCAA--GATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTG 63 Query 15281 TTTTGCAGTCGGCAGGTCTGTGTGTTGTTTGTTCGTCTCAAACTGTATTACGGTGTGGTG 15340 ||||||| | || || |||||||||||||| || |||||||| ||||| || || | Sbjct 62 TTTTGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAG 3 Query 15341 AC 15342 || Sbjct 2 AC 1 >seq158249 Length=1012 Score = 84.2 bits (92), Expect = 4e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 24396 ATTGATAATATAAATTCAACACTTGTGGACCTTGAATGGCTCAATAGGGTTGAAACTTAT 24455 ||||| ||| | ||| || ||||| ||||| ||||||||||| ||| ||||||||||| Sbjct 817 ATTGACAATCTTAATAAGACGCTTGTTGACCTCGAATGGCTCAACAGGATTGAAACTTAT 758 Query 24456 ATTAAGTGGCCATGGTGGGTGTGGTTGCTTATTG 24489 | || |||||||||| |||||| | || |||| Sbjct 757 GTAAAATGGCCATGGTATGTGTGGCTACTAATTG 724 >seq140054 Length=1182 Score = 84.2 bits (92), Expect = 4e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 24396 ATTGATAATATAAATTCAACACTTGTGGACCTTGAATGGCTCAATAGGGTTGAAACTTAT 24455 ||||| || | ||| || ||||| ||||||||||||||||||||| ||||||||||| Sbjct 487 ATTGACAACCTTAATAAGACTCTTGTTGACCTTGAATGGCTCAATAGGATTGAAACTTAT 546 Query 24456 ATTAAGTGGCCATGGTGGGTGTGGTTGCTTATTG 24489 | || ||||| |||| |||||| | || |||| Sbjct 547 GTAAAATGGCCTTGGTATGTGTGGCTACTAATTG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 89353104599470