Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_022643.1 Length=30175 Score E Sequences producing significant alignments: (Bits) Value seq139329 324 3e-84 >seq139329 Length=1076 Score = 324 bits (358), Expect = 3e-84 Identities = 605/881 (69%), Gaps = 22/881 (2%) Strand=Plus/Minus Query 15367 CTAAGTTCTATGGTGGTTGGGATTTTATGTTAAAAACATTGTATAAAGATGTTGATAATC 15426 |||| ||||||||||| ||||| |||| |||| | ||| ||||| |||||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 15427 CAGAACTTATGGGCTGGGATTACCCTAAGTGTGATAGAGCTATGCCTAATATGTGTAGAA 15486 | ||||| ||||| || || ||||| || | ||| ||||||||||| ||| Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 15487 T---TTTTGCATCATTGGTATTAGCTCGTAAACATAGCACATGTTGTACAAACAGTGATA 15543 | || ||| ||| |||||| | | ||| || | ||||||||| | ||||||| Sbjct 956 TGGCTTCTGC--CAT-GGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATA 900 Query 15544 GATTTTACCGCTTAGCTAATGAGTGCGCTCAAGTGCTAAGTGAATATGTACTTTGTGGTG 15603 | || || || | ||||||||| |||||||| || | || ||||| |||| | Sbjct 899 GGTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAG 840 Query 15604 GTGGTTATTATGTTAAACCTGGAGGCACTAGCAGTGGTGATGCTACCACAGCTTATGCAA 15663 |||| | |||| | |||||||| || || | |||||||| | ||| ||||| ||||| | Sbjct 839 GTGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTA 780 Query 15664 ATAGTGTTTTTAACATATTGCAAGCTGTCACTTCAAATGTTGGT--GCTCTTATGGGTGC 15721 | | ||||||||| || |||||||| || | |||||| ||||||| | || Sbjct 779 ACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGT-- 722 Query 15722 TAATGGTAATAAAATCATTGATAAGGA---AGTTAAAGATATGCAATTTGAATTGTATGT 15778 || | || | | | | || | |||||| | || || | | |||| Sbjct 721 ---TGATTCAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGA 665 Query 15779 CAATATTTATAGAAATTCCAAACCGGATTTCAAGTTTGTAGATAAATATTATGCCTTTTT 15838 |||| ||| | | | || |||| | | ||||||| |||||| | | ||| Sbjct 664 CAATTGTTACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTT 605 Query 15839 AAATAGGCACTTTTCAATGATGATACTTTCTGATGATGGTGTCGTCTGCTATAACAAGGA 15898 || | |||||| || |||||||| | |||||||||||||| || || || ||||| || Sbjct 604 AAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGA 545 Query 15899 TTATGCAGCGCGTGGTTACATAGCTGGCATACAGAATTTTAAAGAAACATTGTACTATCA 15958 |||||| | | |||||| |||| | ||| |||||| | || | || ||||| Sbjct 544 TTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCA 485 Query 15959 GAACAATGTGTTTTTGTCAGAGGCTAAGTGTTGGGTGGAACCAGATATAGATAAAGGTCC 16018 ||||||||||||| |||| |||||||||||||| ||||||||| | || || || Sbjct 484 GAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACC 425 Query 16019 ACATGAGTTTTGCTCTCAACACACACTATTAA-TAAAGGA--AGGTGAAGACCACTATTT 16075 ||| || ||||| || ||||||||| || || | |||| || || | |||||| Sbjct 424 ACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTG---ACTATTA 368 Query 16076 CTTACCTTATCCAGATCCCTCTAGGATTTTGTCTGCAGGTTGCTTTGTGGATGATATCAT 16135 |||||||||||||| || ||||| |||||||| |||||| ||||| ||||| || | Sbjct 367 TTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGT 308 Query 16136 TAAGACTGATGGTACTCTCATGGTAGAGCGGTTTGTGTCTTTGGCTATAGATGCTTACCC 16195 |||||| || | ||||| | || || | |||||| | || || ||||| || || Sbjct 307 TAAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCC 248 Query 16196 TCTAACAAAGCATGATAATATAGAATACCAAAATGTATTCT 16236 || ||||| || ||| | ||||||||| ||||||| Sbjct 247 ACTCACAAAACACCCTAAACCTGCATACCAAAAAGTATTCT 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96172534701070