Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_025217.1 Length=31491 Score E Sequences producing significant alignments: (Bits) Value seq139329 264 2e-66 seq96645 98.7 2e-16 >seq139329 Length=1076 Score = 264 bits (292), Expect = 2e-66 Identities = 570/844 (68%), Gaps = 10/844 (1%) Strand=Plus/Minus Query 15680 AAGTTCTATGGTGGATGGAATAACATGCTCAAAACACTTTATGCA-GATGTGGATAATGC 15738 || ||||||||||| ||| | || ||||| || | |||| |||| ||||||||||||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGA-ACTTGATGCGCGATGTGGATAATGG 1016 Query 15739 ACAACTAATGGGTTGGGATTATCCTAAGTGTGACAGAGCTATGCCTAATATGTTGCGTAT 15798 | ||||| ||||| ||||| ||||| ||| | ||| ||||||||||| | || || Sbjct 1015 TTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAAT 956 Query 15799 TTTCGCTTCATTGATTTTAGCCAGAAAGCACAACACGTGTTGTAATGTAAGTGAAAGATA 15858 || | || | || | ||||||| ||||||| ||||| || | Sbjct 955 GGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 15859 CTACAGACTGGCTAATGAGTGCGCTCAAGTATTGAGTGAGATGGTTCTATGTGGTGGTGC 15918 ||| |||| ||||||||| ||||||||| | | ||| | || | ||| |||| Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 15919 TTTGTATGTGAAACCAGGTGGTACTTCCTCCGGTGACGCAACCACTGCATATGCAAATTC 15978 || ||| | ||||| |||||||| | ||||||| || || || ||||| || || Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 15979 TGTTTTCAATATCTGTCAAGCAGTAACGGCCAACATTAGTGCCTTGCTAGCAGCTAATGG 16038 | ||| || |||| |||||| || | || || ||| | ||| || | || Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTC 716 Query 16039 AAACAAGATAGTCGATGTTTACATTCGAGACT-TACAGCGTAAACTGTATGCGAATGTTT 16097 ||||| | ||||| ||| | || | ||||||| || | |||| ||| || Sbjct 715 AAACACCTGTAACAATGTT-ACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 16098 ATCGTAGTGTCCATGTTGATTATAAGTTCGTAGATGAGTACTACGCCTTTTTGCGTAAAC 16157 | |||||| | ||| ||| | | || |||| || || | | ||| | || | Sbjct 656 ACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGC 597 Query 16158 ACTTTTCTATGATGATACTGTCTGACGATGGTGTCGTATGTTACAATAGTGACTACGTAG 16217 |||| ||||||||||| ||||||| |||||||| || |||||||| | || || | | Sbjct 596 ACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTG 537 Query 16218 CTAGAGGCTATATTGCTGGAATAAAAGACTTCAAGCAAGTTCTTTATTACCAGAATAATG 16277 | || ||| | || | || | || ||| ||| ||||| ||||| |||| Sbjct 536 ATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATG 477 Query 16278 TTTTTATGTCGGAAGCCAAGTGTTGGGTGGAACCAGACCTGACTAAAGGCCCACATGAAT 16337 | |||||||| ||| ||||||||||| |||||||| || | | || ||||| |||| Sbjct 476 TGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAAT 417 Query 16338 TTTGTTCACAACACACTATGCTAGTTG-AG--CATAATGGTGAACAAGTGTATCTACCTT 16394 |||||||||||||||| | | | ||| || | ||||||| | ||| |||||| Sbjct 416 TTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTA---TTATTTACCTT 360 Query 16395 ACCCCGACCCCTCAAGAATTTTAGGGGCTTGTTGTTTTGTAGATGATGTTGTCAAAACTG 16454 | || ||||| || |||||||| || || |||||| ||||| |||| || || | Sbjct 359 ATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAG 300 Query 16455 ACGGGACTATCATGATTGAGCGTTTCGTCGCCTTGGCTATTGATGCTTATCCTCTTACCA 16514 || ||||||| |||| |||| || | | || |||||||| ||||| || || | Sbjct 299 ACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAA 240 Query 16515 AACA 16518 |||| Sbjct 239 AACA 236 >seq96645 Length=1578 Score = 98.7 bits (108), Expect = 2e-16 Identities = 263/391 (67%), Gaps = 16/391 (4%) Strand=Plus/Minus Query 17540 CAAGGTCCACCTGGCACAGGTAAAAGTCACCTCGCC--ATTGGTGTAGCAGTTTATTATC 17597 |||||||| ||||| | |||||| |||| | | || ||| | | | ||||||| Sbjct 707 CAAGGTCCTCCTGGTAGTGGTAAA--TCACATTGTGTTATAGGTTTGGGTTTGTATTATC 650 Query 17598 CTACAGCACGCATAGTCTACACTGCTTGTAGTCATGCTGCTGTTGATGCCTTATGTGAAA 17657 || ||| | || || ||||| || ||| ||||| ||||| ||||| |||||||||| Sbjct 649 CTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTTTATGTGAAA 590 Query 17658 AGGCATTC-AGAACATTGCCTATTTCTAAATGCTCACGCATAGTGCCCGCAAAG-GCCCG 17715 | || | | ||||| || | || |||||| ||| | ||| | || ||||| | | Sbjct 589 AAGCTTCCAAGAAC-TTTAATGTTGATAAATGTTCAAGGATAAT-ACCTCAAAGAATCAG 532 Query 17716 CGTAGAGTGTTTTGATAAATTCAAAGTCAATGATGGTACAGCACAATATGTGTTTAGCAC 17775 || || |||| | || ||| ||| || | ||||||||| ||||| |||| Sbjct 531 AGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGTTTTGCAC 472 Query 17776 CATCAATGCCTTACCAGAAACCTCAAC--TGATGTACTCGTTGTGGATGAAGTCAGCATG 17833 | ||||| || || ||| | ||| ||| | | |||||||||||||| ||| Sbjct 471 AGTTAATGCTTTGCCTGAAGC--TAACTGTGACATTGTGGTTGTGGATGAAGTGTCAATG 414 Query 17834 TGTACTAATTATGATCTTAGCATAATTAATGCGCGTGTTCGAGC--AAAGCATATTGTGT 17891 ||||| || |||||||| || | || ||| | | |||| || |||||||| | Sbjct 413 TGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT--GAGCTACAAACATATTGTTT 356 Query 17892 ATGTGGGAGATCCAGCTCAATTGCCAGCGCC 17922 |||| || || ||| ||| | ||||| || Sbjct 355 ATGTAGGTGACCCACAACAACTTCCAGCACC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100372125093830