Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026011.1 Length=31249 Score E Sequences producing significant alignments: (Bits) Value seq139329 134 3e-27 >seq139329 Length=1076 Score = 134 bits (148), Expect = 3e-27 Identities = 519/800 (65%), Gaps = 44/800 (6%) Strand=Plus/Minus Query 15224 AAATTTTATGGCGGCTGGGACGATATGTTGTGCCGCCTTATTAAAGGAGTTGATAATCCT 15283 ||||| ||||| ||||||||| ||||| | | | || | || |||||| | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 15284 GTCTTAATGGGTTGGGATTATCCTAAGTGCGATCGTGCCATGCCAAATATTCTCAGAAT- 15342 || ||||| ||||| ||||| |||||||| ||||| |||| ||||| | |||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 15343 ---TCTGA----GTAGTTTGGTTCTTGCACGTAAGCATGATGCATGTTGTTCACAAACTG 15395 |||| ||| || |||||| ||||| || |||||| |||| | || Sbjct 954 GCTTCTGCCATGGTA-TTGGGTTCT-------AAGCACATTGGTTGTTGTACACATAGTG 903 Query 15396 ATAGGTTCTATCGTTTGGCGAATGAGTGTGCACAAGTTTTGAGTGAAATTGTTATGTGT- 15454 ||||||||||||| | | ||||||| || ||||| | | || |||| ||| Sbjct 902 ATAGGTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTA 843 Query 15455 --GGTGGCTGTTTTTATGTTAAGCCAGGTGGCACTAGTAGTGGGGATGCAACCACTGCCT 15512 |||||| |||||| | || || ||||| || | |||||| || | || || || | Sbjct 842 CAGGTGGC---TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGT 786 Query 15513 TTGCTAATTCTGTGTTTAACATATGTCAAGCTGTCTCTGCCAATGT--ATGTGC-CTT-- 15567 |||||| || | |||||||| | ||||||||| ||||| ||||| | || ||| Sbjct 785 ATGCTAACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAG 726 Query 15568 GATGTCATGC-AATGGCAATAAGATTGAAGATTTGAGTATTCGCAGCCTACAGCGGCGCT 15626 || | || | || | ||| | || || ||| || | ||||||| Sbjct 725 GAGTTGATTCAAACACCTGTAACAATG----TTACAGTTAAGGC--CATACAGCGCAAGA 672 Query 15627 TATACTCTCATGTG-TACCGCAGCGATTATGTTGATCCTGCTTTTGTTAATGAGTTTTAT 15685 |||| | || || ||||| || ||| ||| | ||||| || | || | Sbjct 671 TATA-TGACAATTGTTACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATT-T 614 Query 15686 GAGTT-TTTAAATAAGCATTTTAGTATGATGATTTTGAGTGATGATGGTGTCGTATGTTA 15744 |||| ||||| ||||| || ||||||||||||| |||||||||||| || ||||| Sbjct 613 TAGTTATTTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTA 554 Query 15745 TAATTCTGAGTATGCGTCCAAAGGTTATATTGCTAATATTAGTGCCTTTCAACAGGTGCT 15804 || || ||||| |||||| | || | ||| |||| ||| | || Sbjct 553 CAACAAAGATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCT 494 Query 15805 GTATTATCAAAATAACGTGTTTATGTCAGAATCCAAATGTTGGGTTGAAAATGACATAAA 15864 |||||||| || || ||||||||||| | | || |||||||| ||| || | || Sbjct 493 ATATTATCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAA 434 Query 15865 GAATGGACCTCATGAATTCTGTTCTCAACATACAATGC---TAGTAAAAATGGATGGCGA 15921 ||||| || ||||| ||||| ||||| ||| | | | ||| | ||||| Sbjct 433 TGTGGGACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGG--- 377 Query 15922 TGATGTTTATCTGCCATATCCTGACCCTAGTCGCATTCTGGGAGCGGGCTGTTTTGTGGA 15981 ||| |||| | || ||||| ||||| | | ||| || ||| || |||||| || Sbjct 376 TGACTATTATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGA 317 Query 15982 CGATCTATTAAAGACCGACA 16001 || | | ||||| |||| Sbjct 316 TGACATTGTTAAGACAGACA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99599859991210