Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026423.1 Length=2297 Score E Sequences producing significant alignments: (Bits) Value seq205407 2159 0.0 >seq205407 Length=1958 Score = 2159 bits (2394), Expect = 0.0 Identities = 1641/1937 (85%), Gaps = 0/1937 (0%) Strand=Plus/Plus Query 361 AAACTGACCCAAGGCCGCCAGACCTATGACTGGACGTTGAATAGAAATCAGCCGGCTGCT 420 ||||| |||||||| ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 3 AAACTAACCCAAGGTCGCCAAACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCA 62 Query 421 ACCGCATTGGCCAACACTATAGAGGTATTCAGATCGAATGGCCTGACAGCCAATGAATCA 480 || ||||| |||||||| ||||| || || |||||||| || | ||||| ||||||||| Sbjct 63 ACTGCATTAGCCAACACCATAGAAGTCTTTAGATCGAACGGATTAACAGCTAATGAATCA 122 Query 481 GGAAGGTTGATCGATTTCCTCAAGGACGTGATGGATTCAATGGATAAGGAAGAAATGGAG 540 |||||| | || |||||||||||||| |||||||| ||||||||||| || ||||||||| Sbjct 123 GGAAGGCTAATAGATTTCCTCAAGGATGTGATGGAATCAATGGATAAAGAGGAAATGGAG 182 Query 541 ATTACAACACATTTCCAGAGGAAGAGGAGAGTGAGGGACAACATGACCAAGAAAATGGTC 600 || |||||||| || || || || |||||||| ||||||||||||||||||||||||||| Sbjct 183 ATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGGGACAACATGACCAAGAAAATGGTC 242 Query 601 ACACAGAGAACAATAGGAAAGAAAAAACAAAGACTGAACAAAAGGAGCTACCTAATAAGA 660 ||||| ||||||||||| |||||||| |||||| |||| || || |||||||||||||| Sbjct 243 ACACAAAGAACAATAGGGAAGAAAAAGCAAAGAGTGAATAAGAGAGGCTACCTAATAAGA 302 Query 661 GCACTTACATTGAACACAATGACAAAGGATGCTGAAAGAGGCAAGCTGAAAAGGAGGGCA 720 || | ||||||||||| ||||| || ||||| || |||||||| | ||||| ||||| Sbjct 303 GCTTTGACATTGAACACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGGCT 362 Query 721 ATCGCAACACCCGGGATGCAAATCAGAGGATTCGTGTATTTTGTAGAAGCACTAGCGAGG 780 || |||||||||||||||||||| ||||| |||||||| || || ||| | |||| || Sbjct 363 ATTGCAACACCCGGGATGCAAATTAGAGGGTTCGTGTACTTCGTTGAAACTTTAGCTAGA 422 Query 781 AGCATCTGTGAGAAACTTGAGCAATCTGGCCTCCCTGTCGGAGGGAATGAGAAGAAAGCT 840 ||||| || || || ||||| |||||||| || || || || || ||||| ||||| || Sbjct 423 AGCATTTGCGAAAAGCTTGAACAATCTGGACTTCCGGTTGGGGGTAATGAAAAGAAGGCC 482 Query 841 AAATTGGCAAATGTTGTGAGGAAGATGATGACTAATTCACAAGATACAGAGCTCTCCTTC 900 ||| |||||||||||||||| || |||||||||||||||||||| |||||||| || ||| Sbjct 483 AAACTGGCAAATGTTGTGAGAAAAATGATGACTAATTCACAAGACACAGAGCTTTCTTTC 542 Query 901 ACAATTACTGGGGACAACACCAAATGGAATGAGAATCAAAACCCCCGGATGTTTCTAGCA 960 ||||| |||||||||||||| || |||||||| |||||||||||||| |||||| | || Sbjct 543 ACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAACCCCCGAATGTTTTTGGCG 602 Query 961 ATGATAACATACATCACAAGAAACCAGCCAGAATGGTTTAGAAATGTCTTAAGCATTGCT 1020 ||||| ||||||||||||| || || || |||||||| ||||| || | ||||| || Sbjct 603 ATGATTACATACATCACAAAGAATCAACCTGAATGGTTCAGAAACATCCTGAGCATCGCA 662 Query 1021 CCTATAATGTTCTCAAACAAGATGGCGAGATTAGGAAAAGGGTACATGTTCGAAAGTAAG 1080 || ||||||||||||||||| ||||| ||| | |||||||| ||||||||||| |||||| Sbjct 663 CCAATAATGTTCTCAAACAAAATGGCAAGACTGGGAAAAGGATACATGTTCGAGAGTAAG 722 Query 1081 AGTATGAAGTTACGGACACAAGTACCAGCGGAAATGCTCGCAAATATTGACCTGAAATAC 1140 || |||||| | ||||||||| |||| || |||||||| |||| ||||||||||| || Sbjct 723 AGAATGAAGCTCCGGACACAAATACCTGCAGAAATGCTAGCAAGCATTGACCTGAAGTAT 782 Query 1141 TTCAACAAATCAACAAGAGAGAAAATCGAGAAAATAAGACCTCTACTGATAGATGGCACA 1200 ||||| |||||||||| ||||||| ||||||||||| ||||| || |||||||||||| Sbjct 783 TTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACA 842 Query 1201 GCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGTTGAGTACAGTCTTAGGA 1260 || |||||||| |||||||||||||||||||||||||||||| | |||||||| |||||| Sbjct 843 GCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAGGA 902 Query 1261 GTTTCAATTCTGAATCTCGGGCAGAAGAAGTACACCAAAACCACATATTGGTGGGACGGA 1320 || || || |||||||| || || ||||| |||||||| || ||||| |||||||| || Sbjct 903 GTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAACATACTGGTGGGATGGG 962 Query 1321 CTCCAATCCTCAGATGACTTCGCCCTCATAGTGAATGCACCGAATCATGAGGGAATACAG 1380 |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| Sbjct 963 CTCCAATCCTCAGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACAA 1022 Query 1381 GCAGGAGTAGATAGGTTCTATAGAACCTGCAAATTAGTTGGGATAAACATGAGCAAGAAG 1440 |||||||| ||||| ||||| || |||||||| ||||| || || ||||||||||| ||| Sbjct 1023 GCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAG 1082 Query 1441 AAATCCTACATAAATCGGACAGGAACATTCGAATTCACAAGCTTTTTCTACCGCTATGGA 1500 || ||||| |||||| ||||| ||||| |||||||| |||||||| || || |||||| Sbjct 1083 AAGTCCTATATAAATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATGGA 1142 Query 1501 TTCGTAGCTAACTTCAGTATGGAGTTGCCCAGTTTTGGAGTGTCCGGGATTAATGAGTCA 1560 || || ||||| || || |||||| |||| |||||||||||||| || || || |||||| Sbjct 1143 TTTGTGGCTAATTTTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGTCA 1202 Query 1561 GCTGACATGAGCGTTGGTGTTACAGTAATAAAGAACAATATGATAAACAACGATCTTGGA 1620 |||||||||||| |||| || ||||| ||||||||||| ||||||||||| || |||||| Sbjct 1203 GCTGACATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGA 1262 Query 1621 CCAGCAACAGCCCAAATGGCCCTTCAGCTATTTATCAAAGACTACAGATACACATACCGA 1680 |||||||||||||||||||| || || | || |||||||| |||||||||||||| || Sbjct 1263 CCAGCAACAGCCCAAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATCGG 1322 Query 1681 TGTCACAGGGGTGATACGCAAATTCAAACGAGGAGAGCATTCGAGCTGAAGAAGCTGTGG 1740 || || || || || || ||||| |||||||| ||| |||||||| | |||||||||||| Sbjct 1323 TGCCATAGAGGAGACACACAAATCCAAACGAGAAGATCATTCGAGATAAAGAAGCTGTGG 1382 Query 1741 GAGCAGACCCGTTCGAAGGCAGGACTGTTGGTTTCAGATGGAGGGCCAAACCTGTACAAT 1800 || || |||| || | | ||||||| ||||| |||||||| || |||||| | |||||| Sbjct 1383 GATCAAACCCAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACAAT 1442 Query 1801 ATCCGGAACCTCCACATTCCAGAGGTCTGCTTGAAATGGGAATTGATGGATGAAGACTAC 1860 |||||||| || ||||| || || |||||||| || ||||| |||||||||| | || Sbjct 1443 ATCCGGAATCTTCACATCCCTGAAGTCTGCTTAAAGTGGGAGCTGATGGATGAGAATTAT 1502 Query 1861 CAAGGCAGGTTGTGTAATCCTATGAACCCGTTTGTCAGTCATAAGGAAATTGATTCAGTC 1920 | || || | |||||||| |||| || |||||||| ||||| |||||||| || || Sbjct 1503 CGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAAATTGAGTCTGTA 1562 Query 1921 AACAATGCTGTGGTGATGCCAGCTCATGGCCCAGCCAAAAGCATGGAGTATGATGCCGTT 1980 ||||||||||| || |||||||| ||||| || |||||||| ||||| |||||||||||| Sbjct 1563 AACAATGCTGTAGTAATGCCAGCCCATGGTCCGGCCAAAAGTATGGAATATGATGCCGTT 1622 Query 1981 GCAACCACACATTCATGGATTCCTAAGAGGAATCGCTCCATTCTCAACACCAGCCAAAGG 2040 ||||| ||||| || |||||||| || ||||| ||||| ||||| ||||| ||||||||| Sbjct 1623 GCAACTACACACTCCTGGATTCCCAAAAGGAACCGCTCTATTCTAAACACAAGCCAAAGG 1682 Query 2041 GGGATTCTTGAGGACGAACAGATGTACCAGAAGTGCTGCAACCTATTCGAAAAGTTCTTC 2100 || ||||||||||| ||||||||||||||||||||||||||| | ||||| || || ||| Sbjct 1683 GGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACTTGTTCGAGAAATTTTTC 1742 Query 2101 CCCAGCAGTTCGTACAGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTGTCT 2160 || || ||||| || ||||| || |||||||||| |||||||||||||||||||||||| Sbjct 1743 CCTAGTAGTTCATATAGGAGACCGATTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCT 1802 Query 2161 AGGGCCCGAATTGATGCACGAATTGACTTCGAATCTGGAAGGATTAAGAAAGAAGAGTTT 2220 |||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct 1803 AGGGCCCGGATTGATGCCAGAATTGACTTCGAGTCTGGAAGGATTAAGAAGGAAGAGTTC 1862 Query 2221 GCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAAATAGTGAATT 2280 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1863 TCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAATGAATT 1922 Query 2281 TAGCTTGTCCTTCATGA 2297 ||||||||||||||||| Sbjct 1923 TAGCTTGTCCTTCATGA 1939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7223737529990