Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026424.1 Length=2176 Score E Sequences producing significant alignments: (Bits) Value seq208890 2208 0.0 >seq208890 Length=2206 Score = 2208 bits (2448), Expect = 0.0 Identities = 1787/2176 (82%), Gaps = 0/2176 (0%) Strand=Plus/Minus Query 1 ATGGAAGACTTTGTGCGACAGTGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCA 60 |||||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||| ||| Sbjct 2181 ATGGAAGATTTTGTGCGACAATGCTTCAACCCGATGATTGTCGAACTTGCAGAAAAAGCA 2122 Query 61 ATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACA 120 |||||||| |||||||| |||| |||||| ||||| |||||||| ||| ||||||| || Sbjct 2121 ATGAAAGAGTATGGGGAGGATCTGAAAATTGAAACCAACAAATTTGCAGCAATATGTACT 2062 Query 121 CACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGCGAATCA 180 ||||| || || || |||||||| || |||||||| |||||| | |||| |||||||||| Sbjct 2061 CACTTGGAGGTGTGTTTCATGTATTCAGATTTCCATTTCATCAATGAACAAGGCGAATCA 2002 Query 181 ACTATAATAGAATCTGGCGATCCAAATGCGCTGCTGAAACACCGATTTGAAATAATCGAA 240 | | ||||| || |||||||||||| ||||| || ||| |||||||||||||||| Sbjct 2001 ATAGTGGTAGAACTTGACGATCCAAATGCACTGCTAAAGCACAGATTTGAAATAATCGAG 1942 Query 241 GGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGAGCC 300 ||||||||| ||||||||||||||||||| || || |||||||||||||| || ||||| Sbjct 1941 GGGAGAGACAGAACAATGGCCTGGACAGTAGTAAACAGTATCTGCAACACTACTGGAGCT 1882 Query 301 GAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGTTTCATTGAAATT 360 | |||||| || ||||| |||||| ||||||| ||||| || ||| | ||||| |||||| Sbjct 1881 GGAAAACCGAAGTTTCTACCGGATTTGTATGATTACAAAGAGAACAGATTCATCGAAATT 1822 Query 361 GGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCC 420 |||||||| ||||| |||||||||||||||||||| || || |||||||| || ||||| Sbjct 1821 GGAGTGACAAGGAGAGAAGTCCACATATATTACCTTGAAAAGGCCAATAAGATTAAATCT 1762 Query 421 GAGAAGACACACATCCATATTTTTTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGAT 480 ||||| |||||||| || ||||||||||||||||| || || |||||||| || ||||| Sbjct 1761 GAGAACACACACATTCACATTTTTTCATTCACTGGGGAGGAAATGGCCACAAAGGCAGAC 1702 Query 481 TACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAG 540 |||||||| ||||| ||||||||||| || || |||||||||||||| |||||||| || Sbjct 1701 TACACTCTCGACGAGGAAAGCAGGGCTAGGATTAAAACCAGGCTGTTTACCATAAGACAA 1642 Query 541 GAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACA 600 |||||||||| ||| || || |||||||||||||||||||| |||||||||||||||||| Sbjct 1641 GAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACA 1582 Query 601 ATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCA 660 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1581 ATTGAAGAAAAATTTGAAATCACAGGAACTATGCGCAGGCTTGCCGACCAAAGTCTCCCA 1522 Query 661 CCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGC 720 |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1521 CCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGC 1462 Query 721 TGCATTGAGGGCAAGCTTTCTCAGATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTT 780 ||||||||||||||||||||||| ||||| ||||||||||| ||| |||||| || ||| Sbjct 1461 TGCATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTGAATGCCCAAATTGAACCTTTT 1402 Query 781 CTAAGAACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCG 840 || | ||||||||| | || ||| | | |||||||| ||||| || | ||||||||| Sbjct 1401 CTGAAGACAACACCAAGACCAATCAAACTTCCTAATGGACCTCCTTGTTATCAGCGGTCC 1342 Query 841 AAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAG 900 |||||| | |||||||||||| ||||||| |||||||| ||||| || |||||||| || Sbjct 1341 AAATTCCTCCTGATGGATGCTTTGAAATTGAGCATTGAAGACCCAAGTCACGAAGGAGAA 1282 Query 901 GGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCC 960 ||||| || |||||||||||||||| ||||| ||||| ||||| || |||||||| || Sbjct 1281 GGGATCCCATTATATGATGCGATCAAGTGCATAAAAACATTCTTTGGATGGAAAGAACCT 1222 Query 961 AACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAG 1020 | || |||||||||| || || || ||||| | ||||| || ||| | |||||||| Sbjct 1221 TATATAGTCAAACCACACGAAAAGGGAATAAATTCAAATTACCTGCTGTCATGGAAGCAA 1162 Query 1021 GTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCANNNNNNNNNNNNNNN 1080 || || ||||| | ||||||||||||||||| |||||||||||| Sbjct 1161 GTACTGTCAGAATTGCAGGACATTGAAAATGAGGAGAAGATTCCAAGAACTAAAAACATG 1102 Query 1081 NNNNNNNNNNNNNNNTTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGAC 1140 | |||||||| || ||||| ||||||||||| |||||||| ||| Sbjct 1101 AAGAAAACGAGTCAACTGAAGTGGGCTCTTGGTGAAAACATGGCACCAGAGAAGGTAGAC 1042 Query 1141 TTTGAGGATTGCAAAGATGTCAACGACTTGAAACAGTACAACAGTGATGAGCCAGAGCCC 1200 ||||| | |||| ||| | | ||| ||||| || || | ||||| || || || Sbjct 1041 TTTGAAAACTGCAGAGACATAAGCGATTTGAAGCAATATGATAGTGAAGAACCTGAATTA 982 Query 1201 AGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCGTGTGAACTGACTGACTCA 1260 || ||||| || | ||||| |||| ||| ||||||||||| ||||| || ||||| ||| Sbjct 981 AGGTCACTTTCAAGCTGGATACAGAGTGAGTTCAACAAGGCCTGTGAGCTAACTGATTCA 922 Query 1261 AGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGC 1320 |||| |||| || |||||||| || || || || |||||||| || |||||||||||| Sbjct 921 GTCTGGATAGAGCTCGATGAAATTGGAGAGGACGTAGCCCCAATTGAGCACATTGCAAGC 862 Query 1321 ATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATATATAATG 1380 |||||| |||| ||||| ||||||||||||||||| || || ||||||||||| |||||| Sbjct 861 ATGAGAAGGAATTATTTCACAGCAGAGGTGTCCCATTGTAGAGCTACTGAATACATAATG 802 Query 1381 AAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTT 1440 ||||| || ||||| || || || ||||||||||||| |||||||| ||||| || ||| Sbjct 801 AAGGGGGTATACATTAACACTGCCCTGCTCAATGCATCCTGTGCAGCAATGGACGATTTT 742 Query 1441 CAACTGATTCCAATGATAAGTAAATGTAGAACCAAAGAAGGAAGACGGAAAACAAACCTG 1500 ||||| ||||| |||||||| || || ||||| ||||| ||||| || ||||| || | Sbjct 741 CAACTAATTCCCATGATAAGCAAGTGCAGAACTAAAGAGGGAAGGCGAAAAACCAATTTA 682 Query 1501 TATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAACTTT 1560 ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||| Sbjct 681 TATGGATTCATCATAAAGGGAAGATCTCATTTGAGGAATGACACAGACGTGGTAAATTTT 622 Query 1561 GTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTAT 1620 || || ||||| ||||| || || ||||| || | ||||||||||||||||| || || Sbjct 621 GTGAGCATGGAGTTTTCTCTCACAGACCCGAGACTTGAACCACATAAATGGGAGAAATAC 562 Query 1621 TGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCC 1680 ||||| ||||| ||||| || ||| | || ||| ||| |||||||| | ||||| || Sbjct 561 TGTGTCCTTGAGATAGGAGATATGTTACTAAGAAGTGCCATAGGCCAAATTTCAAGGCCG 502 Query 1681 ATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAA 1740 ||||| |||||||||| || || || || || ||| |||| ||||||||||| ||||| Sbjct 501 ATGTTCTTGTATGTGAGGACAAACGGAACATCAAAGGTCAAAATGAAATGGGGAATGGAG 442 Query 1741 ATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCC 1800 |||||||| ||||| ||||| || ||||| ||||| ||||||||||||||||| || ||| Sbjct 441 ATGAGACGTTGCCTCCTTCAGTCACTCCAGCAGATCGAGAGCATGATTGAAGCCGAGTCC 382 Query 1801 TCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCA 1860 || || |||||||||||| |||||||||| || ||||| || ||||||||| ||||||| Sbjct 381 TCAGTTAAAGAGAAAGACATGACCAAAGAGTTTTTTGAGAATAAATCAGAAGCATGGCCC 322 Query 1861 ATTGGAGAGTCACCTAAAGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTA 1920 ||||| ||||| || || |||||||| ||||||||||| ||||| || || || || || Sbjct 321 ATTGGGGAGTCCCCCAAGGGAGTGGAAGAAGGTTCCATTGGGAAAGTCTGTAGGACTCTA 262 Query 1921 CTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCT 1980 | || || || |||||||| ||||| |||||||| || ||| | || || || ||||| Sbjct 261 TTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCACCACAATTGGAAGGATTTTCAGCG 202 Query 1981 GAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGNNNNNNNNNNN 2040 || || ||||||||||| || |||||||||| |||||||| ||||| | Sbjct 201 GAGTCAAGAAAACTGCTCCTTGTTGTTCAGGCTCTTAGGGACAACCTCGAACCTGGGACC 142 Query 2041 NTTGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTT 2100 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 141 TTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTT 82 Query 2101 TTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAGTTGTGGCAA 2160 ||||| ||||| |||||||||||||||||||| ||||||||| ||| |||||| ||||| Sbjct 81 TTGCTCAATGCGTCTTGGTTCAACTCCTTCCTGACACATGCATTAAAATAGTTATGGCAG 22 Query 2161 TGCTACTATTTGCTAT 2176 |||||||||||| ||| Sbjct 21 TGCTACTATTTGTTAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6837492615660