Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026425.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value seq215665 275 7e-71 >seq215665 Length=1765 Score = 275 bits (304), Expect = 7e-71 Identities = 467/669 (70%), Gaps = 11/669 (2%) Strand=Plus/Minus Query 940 TGTCCGAGATATGTTAAGCAAAGGAGTCTGCTGCTAGCAACAGGGATGAAGAATGTTCCT 999 ||||| ||||||||||||||||| | |||| | |||||||| ||| ||||| || Sbjct 773 TGTCCCAGATATGTTAAGCAAAGCACTCTGAAATTGGCAACAGGAATGCGAAATGTACCA 714 Query 1000 GAGATTCCAAAAGGAAGAGGCCTATTTGGTGCTATAGCGGGTTTCATTGAAAATGGATGG 1059 |||| | || |||||| ||||||| || |||||||||||||| |||||||| ||| Sbjct 713 GAGAAACAAACT---AGAGGCATATTTGGCGCAATAGCGGGTTTCATAGAAAATGGTTGG 657 Query 1060 GAAGGCCTAATTGATGGTTGGTATGGTTTCAGACACCAGAATGCACAGGGAGAGGGAACT 1119 || || | | ||||||||||| |||||||| || || ||| | ||||| ||| Sbjct 656 GAGGGAATGGTGGATGGTTGGTACGGTTTCAGGCATCAAAATTCTGAGGGAAGAGGACAA 597 Query 1120 GCTGCAGATTACAAAAGCACTCAATCGGCAATTGATCAAATAACAGGAAAATTAAACCGG 1179 || |||||| ||||||||||||| | ||||| |||||||| | || || | || || Sbjct 596 GCAGCAGATCTCAAAAGCACTCAAGCAGCAATCGATCAAATCAATGGGAAGCTGAATCGA 537 Query 1180 CTTATAGAAAAAACCAACCAACAATTTGAGTTGATAGACAATGAATTCAATGAGGTAGA- 1238 | || | ||||||||| | |||| | ||| || || |||||| || ||||| Sbjct 536 TTGATCGGGAAAACCAACGAGAAATTCCATCAGATTGAAAAAGAATTCTCAGAAGTAGAA 477 Query 1239 -GAAGCAAATCGGTAATGTGATAAATTGGACCAGAGATTCTATAACAGAAGTGTGGTCAT 1297 | || || || | | ||| |||| | || || ||| || ||| | ||||||| Sbjct 476 GGGAG-AATTCAGGACCTTGAGAAATATGTTGAG-GACACTAAAATAGATCTCTGGTCAT 419 Query 1298 ACAATGCTGAACTCTTGGTAGCAATGGAGAACCAGCATACAATTGATCTGGCTGATTCAG 1357 |||| || || || | || || |||||||||| |||||||||||||| |||| |||| Sbjct 418 ACAACGCGGAGCTTCTTGTTGCCCTGGAGAACCAACATACAATTGATCTAACTGACTCAG 359 Query 1358 AAATGGACAAACTGTACGAACGAGTGAAAAGACAGCTGAGAGAGAATGCTGAAGAAGATG 1417 ||||| ||||||||| ||| | || | || ||||| || |||||||| || | Sbjct 358 AAATGAACAAACTGTTTGAAAAAACAAAGAAGCAACTGAGGGAAAATGCTGAGGATATGG 299 Query 1418 GCACTGGTTGCTTTGAAATATTTCACAAGTGTGATGATGACTGTATGGCCAGTATTAGAA 1477 ||| |||||| || |||||| ||||| ||||| ||| ||| || | || |||| Sbjct 298 GCAATGGTTGTTTCAAAATATACCACAAATGTGACAATGCCTGCATAGGATCAATCAGAA 239 Query 1478 ATAACACCTATGATCACAGCAAATACAGGGAAGAGGCAATGCAAAATAGAATACAGATTG 1537 || || ||||| ||| |||||||| || ||| | | || | | ||||| Sbjct 238 ATGGAACTTATGACCACGATGTGTACAGGGATGAAGCATTAAACAACCGGTTCCAGATCA 179 Query 1538 ACCCAGTCAAACT-AAG-CAGCGGCTACAAAGATGTGATACTTTGGTTTAGCTTCGGGGC 1595 | ||| | || ||| || || ||||||||| ||| || ||| || ||| | Sbjct 178 AGGGAGTTGAGCTGAAGTCA--GGGTACAAAGATTGGATCCTATGGATTTCCTTTGCCAT 121 Query 1596 ATCATGTTT 1604 ||||||||| Sbjct 120 ATCATGTTT 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5343586666020