Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026426.1 Length=1506 Score E Sequences producing significant alignments: (Bits) Value seq209859 1270 0.0 >seq209859 Length=1262 Score = 1270 bits (1408), Expect = 0.0 Identities = 1038/1259 (82%), Gaps = 1/1259 (0%) Strand=Plus/Plus Query 159 AGGGAGG-CTGATTCAGAACAGTATAACAATAGAGAGAATGGTACTCTCTGCATTTGATG 217 ||||| | |||||||| || || |||||||||||||||||||| |||||||| ||||| | Sbjct 4 AGGGACGACTGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTGACG 63 Query 218 AAAGAAGGAACAGATACCTGGAAGAGCACCCCAGTGCAGGAAAGGACCCTAAGAAAACTG 277 | |||||||| | |||||| |||||||| |||||||| || || || ||||||||||||| Sbjct 64 AGAGAAGGAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAACTG 123 Query 278 GAGGTCCAATTTACAGGAGAAGAGACGGAAAATGGGTGAGAGAGCTGATCCTGTATGACA 337 |||| || || || | |||| ||||||||||||| |||| || || ||||| ||||||| Sbjct 124 GAGGACCCATATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATGACA 183 Query 338 AAGAGGAAATCAGGAGAATTTGGCGACAAGCGAACAATGGAGAGGATGCAACTGCTGGTC 397 |||| ||||| |||||| ||||||| ||||| |||||||| || |||||||| || || | Sbjct 184 AAGAAGAAATAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCGGCC 243 Query 398 TTACCCATCTGATGATATGGCATTCCAACCTGAATGATGCTACCTATCAGAGAACGAGAG 457 |||||||| | ||||| ||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 244 TTACCCATATTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAAGAG 303 Query 458 CTCTCGTGCGTACTGGAATGGATCCCCGGATGTGCTCTCTGATGCAAGGATCAACTCTCC 517 |||| || || ||||| ||||||||| | |||||||| || |||||||| ||||| || | Sbjct 304 CTCTTGTTCGCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACACTTC 363 Query 518 CGAGGAGATCTGGAGCTGCAGGTGCAGCAGTGAAGGGGATAGGGACAATGGTGATGGAAC 577 | || || |||||||| |||||||| ||||| || || | || ||||| | |||||| Sbjct 364 CCAGAAGGTCTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGGAGT 423 Query 578 TGATTCGGATGATAAAACGAGGGATCAACGACCGGAATTTCTGGAGAGGCGAAAATGGAA 637 | || | ||||| ||||| |||||||| ||||| || |||||||| || ||||||||| Sbjct 424 TAATCAGAATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATGGAC 483 Query 638 GAAGGACAAGAATTGCATATGAGAGAATGTGCAACATCCTCAAAGGGAAATTCCAAACAG 697 |||||||||| ||||||||||| |||||||||||||| |||||||||||||| || |||| Sbjct 484 GAAGGACAAGGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGACAG 543 Query 698 CAGCACAAAGGGCAATGATGGATCAAGTGCGAGAGAGCAGAAATCCTGGGAATGCTGAAA 757 | ||||| ||||||||||||||||||||| |||| || | || || || || ||||||| Sbjct 544 CTGCACAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTGAAA 603 Query 758 TAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCAGTGGCTCATA 817 | |||||||| ||||| |||||| |||| |||||||| | ||||| ||||| || |||| Sbjct 604 TTGAAGATCTTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCACATA 663 Query 818 AATCCTGCTTGCCTGCTTGTGTGTACGGACTTGCAGTGGCTAGTGGATATGACTTTGAGA 877 | || ||| |||||||||||||||| || |||||||| || ||||| |||||||||| | Sbjct 664 AGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTGAAA 723 Query 878 GAGAAGGGTACTCCTTGGTTGGAATAGATCCTTTCCGTCTGCTTCAAAACAGCCAGGTCT 937 ||||||| || || |||| || ||||| || ||| || ||||||||||| || || | Sbjct 724 GAGAAGGATATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAGTAT 783 Query 938 TTAGTCTCATTAGACCAAATGAGAACCCAGCACATAAGAGCCAACTAGTGTGGATGGCAT 997 | || || || ||||||||||| |||||||| || ||||| ||||| ||||||||||| | Sbjct 784 TCAGCCTAATCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGGCTT 843 Query 998 GCCACTCTGCAGCGTTTGAGGACCTTAGGGTCTCAAGTTTCATTAGAGGGACAAGAATGG 1057 |||||||||| || |||||||| | || || ||| | ||||| ||||||| || | ||| Sbjct 844 GCCACTCTGCCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAGTGG 903 Query 1058 TCCCAAGAGGACAGCTATCCACTAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAG 1117 | ||||||||| ||| ||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 904 TTCCAAGAGGAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGGAAG 963 Query 1118 CAATGGACTCCAATACTCTTGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGAAGCG 1177 | |||||||| | ||| || ||||| || || || || ||||| ||||| |||||||||| Sbjct 964 CTATGGACTCTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAAGCG 1023 Query 1178 GAGGGAACACCAACCAACAGAGGGCATCTGCAGGACAGGTCAGCGTTCAACCCACTTTCT 1237 | || || ||||| ||||||| |||||| ||||| ||| |||| || ||||| || |||| Sbjct 1024 GGGGAAATACCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACATTCT 1083 Query 1238 CAGTACAGAGAAACCTTCCTTTCGAAAGAGCAACCATTATGGCAGCATTTACAGGAAATA 1297 ||||||| || || || ||||| || ||||| ||| |||||||||| || | || | | Sbjct 1084 CAGTACAAAGGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGGACA 1143 Query 1298 CTGAGGGTAGAACGTCTGACATGAGGACTGAAATCATAAGAATGATGGAAAGTGCCAGAC 1357 |||||| | || || || ||| | |||||||||||||| |||||||||||||| | | Sbjct 1144 ATGAGGGACGGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAAAGC 1203 Query 1358 CAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACG 1416 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1204 CAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACG 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4698781106560