Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026427.1 Length=985 Score E Sequences producing significant alignments: (Bits) Value seq197496 1227 0.0 >seq197496 Length=1027 Score = 1227 bits (1360), Expect = 0.0 Identities = 863/985 (88%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 1 ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTC 60 ||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||| Sbjct 1001 ATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCTCTCTATCGTTCCGTCAGGCCCCCTC 942 Query 61 AAAGCCGAGATCGCACAGAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAG 120 ||||||||||| || ||||||||||| ||||||||||||||||| ||| | ||||| ||| Sbjct 941 AAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTTTGCAGGGAAAAACACCGATCTTGAG 882 Query 121 GCTCTCATGGAGTGGATAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTA 180 || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 GCACTCATGGAATGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTA 822 Query 181 GGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGGTTTGTC 240 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 821 GGATTTGTATTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTC 762 Query 241 CAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCGGTTAAATTATAC 300 || || ||||| |||||||| || ||||| |||||||||||||| ||||| ||| | ||| Sbjct 761 CAGAATGCCCTCAATGGGAACGGTGACCCGAACAACATGGACAAAGCGGTCAAACTGTAC 702 Query 301 AAGAAACTGAAGAGGGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCA 360 | ||||| || |||||||| ||||| || || || || ||||| || |||||||| || Sbjct 701 AGAAAACTCAAAAGGGAAATAACATTCCACGGGGCCAAAGAAGTAGCGCTCAGTTATTCT 642 Query 361 ACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGAATGGGGACTGTGACCGCA 420 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| | Sbjct 641 GCTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGAATGGGGACTGTCACCACT 582 Query 421 GAAGGGGCTCTTGGACTAGTATGTGCCACTTGTGAGCAGATTGCTGACGCACAACATCGG 480 || | ||| |||| |||||||| || || ||||| ||||||||||| | || ||||| Sbjct 581 GAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGAACAGATTGCTGATTCCCAGCATCGA 522 Query 481 TCCCACAGGCAGATGGCGACTACTACTAACCCACTAATTAGGCATGAGAATAGAATGGTA 540 || || || || |||| ||| || || || |||||||| ||||||||||| ||||||||| Sbjct 521 TCTCATAGACAAATGGTGACAACAACCAATCCACTAATCAGGCATGAGAACAGAATGGTA 462 Query 541 CTAGCCAGCACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAACAGGCAGCG 600 |||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| Sbjct 461 TTAGCCAGCACAACGGCTAAAGCCATGGAACAAATGGCTGGATCAAGTGAACAAGCAGCA 402 Query 601 GAAGCCATGGAAGTTGCAAGTCAGGCTAGGCAAATGGTGCAGGCTATGAGAACAGTTGGG 660 || |||||||| ||||| || ||||||||||||||||| ||||| ||||||||| ||||| Sbjct 401 GAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAATGGTACAGGCAATGAGAACAATTGGG 342 Query 661 ACTCACCCTAACTCCAGTACAGGTCTAAAAGATGATCTTATTGAAAATTTGCAGGCCTAC 720 |||||||||| |||||| | |||||||||||||||||| |||||||||| |||||||| Sbjct 341 ACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGATCTTCTTGAAAATTTACAGGCCTAT 282 Query 721 CAGAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGAGCCTCTAGTCGTTGCAGCTAA 780 ||||| || ||||| ||||| |||| || ||||||||| ||||| || | ||| || | Sbjct 281 CAGAAGCGAATGGGGGTGCAGATGCAACGATTCAAGTGATCCTCTCGTTGCTGCCGCAAG 222 Query 781 CATTATTGGGATATTGCACTTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCAT 840 ||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 221 CATCATTGGGATTTTGCACCTGATATTGTGGATTCTTGATCGTCTTTTTTTCAAATGCAT 162 Query 841 TTATCGTCGTTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTC 900 ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 161 TTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCGGAGTC 102 Query 901 TATGAGGGAAGAATATCGGCAGGAACAGCAGAATGCTGTGGATGTTGACGATGGTCATTT 960 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 101 TATGAGGGAAGAATATCGGCAGAAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTT 42 Query 961 TGTCAACATAGAGCTGAAGTAAAAA 985 ||||||||||| ||| |||||||| Sbjct 41 TGTCAACATAGTGCTAGAGTAAAAA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3039106618520