Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026431.1 Length=982 Score E Sequences producing significant alignments: (Bits) Value seq197496 1288 0.0 >seq197496 Length=1027 Score = 1288 bits (1428), Expect = 0.0 Identities = 875/982 (89%), Gaps = 0/982 (0%) Strand=Plus/Minus Query 1 ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCCCCTC 60 ||||| ||||||||||||||||||||||| ||||| |||||| | ||||||||||||||| Sbjct 1001 ATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCTCTCTATCGTTCCGTCAGGCCCCCTC 942 Query 61 AAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCTTGAG 120 ||||||||||| ||||||||||| ||| ||| |||||||| || ||||| ||||||||| Sbjct 941 AAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTTTGCAGGGAAAAACACCGATCTTGAG 882 Query 121 GCTCTCATGGAATGGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTA 180 || |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 881 GCACTCATGGAATGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTA 822 Query 181 GGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTC 240 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 GGATTTGTATTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTC 762 Query 241 CAAAATGCCCTAAATGGGAATGGGGACCCGAACAACATGGATAGAGCAGTTAAACTATAC 300 || |||||||| |||||||| || ||||||||||||||||| | ||| || ||||| ||| Sbjct 761 CAGAATGCCCTCAATGGGAACGGTGACCCGAACAACATGGACAAAGCGGTCAAACTGTAC 702 Query 301 AAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGTGTCACTAAGCTATTCA 360 | || |||||||| |||||||| ||||| |||||||| || || | || || ||||| Sbjct 701 AGAAAACTCAAAAGGGAAATAACATTCCACGGGGCCAAAGAAGTAGCGCTCAGTTATTCT 642 Query 361 ACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGGATGGGAACAGTGACCACA 420 |||||||||||||||||||||||||||||||||||||||| ||||| || || ||||| Sbjct 641 GCTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGAATGGGGACTGTCACCACT 582 Query 421 GAAGCTGCTTTTGGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCATCGG 480 || | || ||||||||||| || || || |||||||||||||||||||| |||||||| Sbjct 581 GAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGAACAGATTGCTGATTCCCAGCATCGA 522 Query 481 TCTCACAGACAGATGGCTACTACCACCAATCCACTAATCAGGCATGAAAACAGAATGGTG 540 ||||| ||||| |||| || || ||||||||||||||||||||||| ||||||||||| Sbjct 521 TCTCATAGACAAATGGTGACAACAACCAATCCACTAATCAGGCATGAGAACAGAATGGTA 462 Query 541 CTGGCTAGCACTACGGCAAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGCAGCG 600 | || ||||| ||||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 461 TTAGCCAGCACAACGGCTAAAGCCATGGAACAAATGGCTGGATCAAGTGAACAAGCAGCA 402 Query 601 GAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAATGAGAACTATTGGG 660 ||||||||||||||||| | ||| ||||||| |||||||| ||||||||||| |||||| Sbjct 401 GAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAATGGTACAGGCAATGAGAACAATTGGG 342 Query 661 ACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGCCTAC 720 ||||| ||||| |||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 341 ACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGATCTTCTTGAAAATTTACAGGCCTAT 282 Query 721 CAGAAGCGAATGGGAGTGCAGATGCAGCGATTCAAGTGATCCTCTCGTCATTGCAGCAAA 780 |||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||| Sbjct 281 CAGAAGCGAATGGGGGTGCAGATGCAACGATTCAAGTGATCCTCTCGTTGCTGCCGCAAG 222 Query 781 TATCATTGGGATCTTGCACCTGATATTGTGGATTACTGATCGTCtttttttCAAATGTAT 840 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 221 CATCATTGGGATTTTGCACCTGATATTGTGGATTCTTGATCGTCTTTTTTTCAAATGCAT 162 Query 841 TTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTGAGTC 900 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 161 TTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCGGAGTC 102 Query 901 CATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTT 960 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 101 TATGAGGGAAGAATATCGGCAGAAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTT 42 Query 961 TGTCAACATAGAGCTAGAGTAA 982 ||||||||||| |||||||||| Sbjct 41 TGTCAACATAGTGCTAGAGTAA 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3029529601865