Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026433.1 Length=1701 Score E Sequences producing significant alignments: (Bits) Value seq197579 1382 0.0 >seq197579 Length=1067 Score = 1382 bits (1532), Expect = 0.0 Identities = 946/1067 (89%), Gaps = 0/1067 (0%) Strand=Plus/Plus Query 357 AGAGCAATTGAGCTCAGTGTCATCATTTGAAAGGTTTGAGATATTCCCCAAGACAAGTTC 416 |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1 AGAGCAGTTGAGCTCAGTGTCATCATTTGAAAGATTCGAGATATTCCCCAAGACAAGTTC 60 Query 417 ATGGCCCAATCATGACTCGAACAAAGGTGTAACGGCAGCATGTCCTCATGCTGGAGCAAA 476 |||||| ||||||| | |||| |||||| ||||||||||| ||| ||||||||||||| Sbjct 61 GTGGCCCGATCATGAAACAAACAGAGGTGTGACGGCAGCATGCCCTTATGCTGGAGCAAA 120 Query 477 AAGCTTCTACAAAAATTTAATATGGCTAGTTAAAAAAGGAAATTCATACCCAAAGCTCAG 536 |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 121 CAGCTTCTACAGAAATTTAATATGGCTGGTGAAAAAAGGAAATTCATACCCAAAGCTCAG 180 Query 537 CAAATCCTACATTAATGATAAAGGGAAAGAAGTCCTCGTGCTATGGGGCATTCACCATCC 596 ||||||||| |||| |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 181 CAAATCCTATGTTAACAATAAAGGGAAGGAAGTCCTTGTGCTATGGGGCATTCATCATCC 240 Query 597 ATCTACTAGTGCTGACCAACAAAGTCTCTATCAGAATGCAGATGCATATGTTTTTGTGGG 656 | |||| ||| |||| |||||||||||||| || ||||||||||| ||||||||||| || Sbjct 241 ACCTACCAGTACTGATCAACAAAGTCTCTACCAAAATGCAGATGCCTATGTTTTTGTAGG 300 Query 657 GTCATCAAGATACAGCAAGAAGTTCAAGCCGGAAATAGCAATAAGACCCAAAGTGAGGGR 716 |||||||| ||| | || ||||||||||| ||||||||| ||||||||| ||||| | Sbjct 301 GTCATCAAAATATAACAGAAAGTTCAAGCCAGAAATAGCAGCAAGACCCAAGGTGAGAGG 360 Query 717 TCRAGAAGGGAGAATGAACTATTACTGGACACTAGTAGAGCCGGGAGACAAAATAACATT 776 || || |||||| ||||||||||||||||||||| |||| || ||||||| ||||||||| Sbjct 361 TCAAGCAGGGAGGATGAACTATTACTGGACACTAATAGAACCTGGAGACACAATAACATT 420 Query 777 CGAAGCAACTGGAAATCTAGTGGTACCGAGATATGCATTCGCAATGGAAAGAAATGCTGG 836 |||||||||||||||||||||||||| |||||||| ||||||||| | ||| | |||| Sbjct 421 TGAAGCAACTGGAAATCTAGTGGTACCAAGATATGCTTTCGCAATGAATAGAGGTTCTGG 480 Query 837 ATCTGGTATTATCATTTCAGATACACCAGTCCACGATTGCAATACAACTTGTCAAACACC 896 |||||||||||| ||||| ||| ||||||| || ||||| || || | ||||||||||| Sbjct 481 ATCTGGTATTATAATTTCGGATGCACCAGTTCATGATTGTAACACGAAGTGTCAAACACC 540 Query 897 CAAGGGTGCTATAAACACCAGCCTCCCATTTCAGAATATACATCCGATCACAATTGGAAA 956 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 541 CAAGGGTGCCATAAACACCAGCCTCCCATTTCAGAATATACATCCAGTCACAATTGGAGA 600 Query 957 ATGTCCAAAATATGTAAAAAGCACAAAATTGAGACTGGCCACAGGATTGAGGAATATCCC 1016 ||||||||||||||| |||||||||||||||||| |||| |||||| | ||||||||||| Sbjct 601 ATGTCCAAAATATGTCAAAAGCACAAAATTGAGAATGGCTACAGGACTAAGGAATATCCC 660 Query 1017 GTCTATTCAATCTAGAGGCCTATTTGGGGCCATTGCCGGTTTCATTGAAGGGGGGTGGAC 1076 |||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 661 GTCTATTCAATCTAGAGGTCTGTTTGGAGCCATTGCTGGTTTTATTGAGGGGGGATGGAC 720 Query 1077 AGGGATGGTAGATGGATGGTACGGTTATCACCATCAAAATGAGCAGGGGTCAGGATATGC 1136 ||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct 721 AGGAATGATAGATGGATGGTATGGTTATCACCATCAGAATGAACAGGGATCAGGATATGC 780 Query 1137 AGCCGACCTGAAGAGCACACAGAATGCCATTGACGAGATTACTAACAAAGTAAATTCTGT 1196 ||| |||| | ||||||||| ||||||||||||| ||| |||||||||||||||||||| Sbjct 781 AGCGGACCAAAGGAGCACACAAAATGCCATTGACGGGATCACTAACAAAGTAAATTCTGT 840 Query 1197 TATTGAAAAGATGAATACACAGTTCACAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAA 1256 ||||||||||||||| || || ||||| ||||| |||||||| ||||||||| ||||||| Sbjct 841 TATTGAAAAGATGAACACGCAATTCACGGCAGTGGGTAAAGAATTCAACCACTTGGAAAA 900 Query 1257 AAGAATAGAGAATTTAAATAAAAAAGTTGATGATGGTTTCCTGGACATTTGGACTTACAA 1316 |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| Sbjct 901 AAGAATAGAGAATTTAAACAAAAAGGTTGATGATGGTTTTCTGGATATTTGGACATACAA 960 Query 1317 TGCCGAACTGTTGGTTCTATTGGAAAATGAAAGAACTTTGGACTACCACGATTCAAATGT 1376 ||| ||||||||||||||||||||||||||||||||| |||| | |||||| || ||||| Sbjct 961 TGCAGAACTGTTGGTTCTATTGGAAAATGAAAGAACTCTGGATTTCCACGACTCGAATGT 1020 Query 1377 GAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGCCA 1423 |||||| | ||||| || |||||||||||||||| |||||||||| Sbjct 1021 AAAGAACCTGTATGAGAAAGTAAGAAGCCAGCTAAGGAACAATGCCA 1067 Lambda K H 0.635 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5321241918910