Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026435.1 Length=2274 Score E Sequences producing significant alignments: (Bits) Value seq205407 2870 0.0 >seq205407 Length=1958 Score = 2870 bits (3182), Expect = 0.0 Identities = 1785/1914 (93%), Gaps = 0/1914 (0%) Strand=Plus/Plus Query 361 AAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCA 420 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3 AAACTAACCCAAGGTCGCCAAACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCA 62 Query 421 ACTGCATTGGCCAACACCATAGAAGTCTTTAGATCGAATGGCCTAACAGCTAATGAGTCA 480 |||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||| Sbjct 63 ACTGCATTAGCCAACACCATAGAAGTCTTTAGATCGAACGGATTAACAGCTAATGAATCA 122 Query 481 GGAAGGCTAATAGATTTCTTAAAGGATGTAATGGAATCAATGAACAAAGAGGAAATAGAG 540 |||||||||||||||||| | |||||||| |||||||||||| | ||||||||||| ||| Sbjct 123 GGAAGGCTAATAGATTTCCTCAAGGATGTGATGGAATCAATGGATAAAGAGGAAATGGAG 182 Query 541 ATAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTC 600 |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 183 ATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGGGACAACATGACCAAGAAAATGGTC 242 Query 601 ACGCAAAGAACAATAGGGAAGAAAAAACAAAGACTGAATAAGAGAGGCTATCTAATAAGA 660 || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| Sbjct 243 ACACAAAGAACAATAGGGAAGAAAAAGCAAAGAGTGAATAAGAGAGGCTACCTAATAAGA 302 Query 661 GCACTGACATTAAATACGATGACCAAAGATGCAGAGAGAGGCAAGTTAAAAAGAAGGGCT 720 || ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 303 GCTTTGACATTGAACACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGGCT 362 Query 721 ATCGCAACACCTGGGATGCAGATTAGAGGTTTCGTATACTTTGTTGAAACTTTAGCTAGG 780 || |||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 363 ATTGCAACACCCGGGATGCAAATTAGAGGGTTCGTGTACTTCGTTGAAACTTTAGCTAGA 422 Query 781 AGCATTTGCGAAAAGCTTGAACAGTCTGGGCTCCCAGTAGGGGGCAATGAAAAGAAGGCC 840 ||||||||||||||||||||||| ||||| || || || ||||| ||||||||||||||| Sbjct 423 AGCATTTGCGAAAAGCTTGAACAATCTGGACTTCCGGTTGGGGGTAATGAAAAGAAGGCC 482 Query 841 AAACTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACACAGAGATTTCTTTC 900 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 483 AAACTGGCAAATGTTGTGAGAAAAATGATGACTAATTCACAAGACACAGAGCTTTCTTTC 542 Query 901 ACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCG 960 ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 543 ACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAACCCCCGAATGTTTTTGGCG 602 Query 961 ATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAGCATGGCA 1020 ||||||||||| ||||| | |||||||| || ||||||||||||||||||||||| ||| Sbjct 603 ATGATTACATACATCACAAAGAATCAACCTGAATGGTTCAGAAACATCCTGAGCATCGCA 662 Query 1021 CCCATAATGTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTTCGAGAGTAAA 1080 || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 663 CCAATAATGTTCTCAAACAAAATGGCAAGACTGGGAAAAGGATACATGTTCGAGAGTAAG 722 Query 1081 AGAATGAAGATTCGAACACAAATACCAGCAGAAATGCTAGCAAGCATTGACCTGAAGTAC 1140 ||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 723 AGAATGAAGCTCCGGACACAAATACCTGCAGAAATGCTAGCAAGCATTGACCTGAAGTAT 782 Query 1141 TTCAATGAATCAACAAAGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACA 1200 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 TTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACA 842 Query 1201 GCATCACTGAGTCCTGGGATGATGATGGGCATGTTCAACATGCTAAGTACGGTCTTGGGA 1260 |||||| |||| ||||| |||||||||||||||||||||||||||||||| || || ||| Sbjct 843 GCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAGGA 902 Query 1261 GTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAATATACTGGTGGGATGGG 1320 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 903 GTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAACATACTGGTGGGATGGG 962 Query 1321 CTCCAATCATCCGACGATTTTGCTCTCATAGTGAATGCACCAAACCATGAGGGAATACAA 1380 |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 963 CTCCAATCCTCAGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACAA 1022 Query 1381 GCAGGAGTGGACAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAG 1440 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 GCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAG 1082 Query 1441 AAGTCCTATATAAATAAGACAGGGACATTTGAATTCACAAGCtttttttATCGCTATGGA 1500 ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 1083 AAGTCCTATATAAATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATGGA 1142 Query 1501 TTTGTGGCTAATTTTAGCATGGAGCTACCCAGCTTTGGAGTGTCTGGAGTAAATGAATCA 1560 |||||||||||||||||||||||||| || || ||||||||||||||| |||| || ||| Sbjct 1143 TTTGTGGCTAATTTTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGTCA 1202 Query 1561 GCTGACATGAGTATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGA 1620 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1203 GCTGACATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGA 1262 Query 1621 CCTGCAACGGCCCAGATGGCTCTTCAATTGTTCATCAAAGACTACAGATACACATATAGG 1680 || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||| || Sbjct 1263 CCAGCAACAGCCCAAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATCGG 1322 Query 1681 TGCCATAGGGGAGACACACAAATTCAGACGAGAAGATCATTTGAGTTAAAGAAGCTGTGG 1740 |||||||| |||||||||||||| || |||||||||||||| ||| |||||||||||||| Sbjct 1323 TGCCATAGAGGAGACACACAAATCCAAACGAGAAGATCATTCGAGATAAAGAAGCTGTGG 1382 Query 1741 GATCAAACCCAATCAAAGGTAGGGCTATTAGTATCAGATGGAGGACCAAACTTATACAAT 1800 |||||||||||||||| | ||| ||||| ||||||||||| |||||||||||||||||| Sbjct 1383 GATCAAACCCAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACAAT 1442 Query 1801 ATACGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGGAGCTAATGGATGATGATTAT 1860 || |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| Sbjct 1443 ATCCGGAATCTTCACATCCCTGAAGTCTGCTTAAAGTGGGAGCTGATGGATGAGAATTAT 1502 Query 1861 CGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGTCATAAAGAGATTGATTCTGTA 1920 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 1503 CGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAAATTGAGTCTGTA 1562 Query 1921 AACAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCAAAAGCATGGAATATGATGCCGTT 1980 ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1563 AACAATGCTGTAGTAATGCCAGCCCATGGTCCGGCCAAAAGTATGGAATATGATGCCGTT 1622 Query 1981 GCAACTACACATTCCTGGATTCCCAAGAGGAATCGTTCTATTCTCAACACAAGCCAAAGG 2040 ||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||| Sbjct 1623 GCAACTACACACTCCTGGATTCCCAAAAGGAACCGCTCTATTCTAAACACAAGCCAAAGG 1682 Query 2041 GGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAATCTATTCGAGAAATTTTTC 2100 ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1683 GGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACTTGTTCGAGAAATTTTTC 1742 Query 2101 CCTAGCAGTTCATATAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCT 2160 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1743 CCTAGTAGTTCATATAGGAGACCGATTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCT 1802 Query 2161 AGGGCCCGGATTGATGCCAGGGTCGACTTCGAGTCTGGACGGATCAAGAAAGAAGAGTTC 2220 |||||||||||||||||||| | ||||||||||||||| |||| ||||| ||||||||| Sbjct 1803 AGGGCCCGGATTGATGCCAGAATTGACTTCGAGTCTGGAAGGATTAAGAAGGAAGAGTTC 1862 Query 2221 TCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA 2274 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1863 TCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA 1916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7150319075200