Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026436.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value seq209859 1739 0.0 >seq209859 Length=1262 Score = 1739 bits (1928), Expect = 0.0 Identities = 1139/1262 (90%), Gaps = 0/1262 (0%) Strand=Plus/Plus Query 155 ATGATGGACGACTAATCCAGAATAGCATAACAATAGAGAGGATGGTGCTTTCTGCTTTTG 214 |||| |||||||| || || |||||||||||||||||||| |||||||| |||||||||| Sbjct 1 ATGAGGGACGACTGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 60 Query 215 ATGAGAGAAGAAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAGGACCCTAAGAAAA 274 | |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 61 ACGAGAGAAGGAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAA 120 Query 275 CAGGAGGACCCATATATAGAAGAGTAGACGGAAAGTGGATGAGAGAACTCATCCTTTATG 334 | |||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||| Sbjct 121 CTGGAGGACCCATATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATG 180 Query 335 ACAAAGRAGAAATAAGGAGAGTTTGGCGCCTAGCAAACAATGGCGAAGATGCAACAGCAG 394 |||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||||| | Sbjct 181 ACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCG 240 Query 395 GTCTTACTCATATCATGATTTGGCATTCCAACCTGAATGATGCCACATATCAGAGAACAA 454 | ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| Sbjct 241 GCCTTACCCATATTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAA 300 Query 455 GAGCGCTTGTTCGCACCGGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACAC 514 |||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 301 GAGCTCTTGTTCGCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACAC 360 Query 515 TTCCCAGAAGGTCTGGTGCCGCAGGTGCTGCGGTGAAAGGAGTTGGAACAATAGCAATGG 574 |||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||| Sbjct 361 TTCCCAGAAGGTCTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGG 420 Query 575 AGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAATTTCTGGAGGGGTGAAAATG 634 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 421 AGTTAATCAGAATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATG 480 Query 635 GACGAAGGACAAGGGTTGCTTATGAAAGAATGTGCAATATCCTCAAAGGAAAATTTCAAA 694 |||||||||||||| |||| ||||||||||||||||| || |||||||| |||||||| | Sbjct 481 GACGAAGGACAAGGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGA 540 Query 695 CAGCTGCCCAGAGGGCAATGATGGATCAAGTAAGAGAAAGTCGAAACCCAGGAAACGCTG 754 ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 541 CAGCTGCACAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTG 600 Query 755 AGATTGAAGACCTCATTTTCCTGGCACGGTCAGCACTCATTCTGAGGGGATCAGTTGCAC 814 | |||||||| || ||||||||||||||||||||||||||| | || || |||||||||| Sbjct 601 AAATTGAAGATCTTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCAC 660 Query 815 ATAAATCCTGNNNNNNNNNNNNNNNNNATGGGCTTGCAGTAGCAAGTGGGCATGACTTTG 874 |||| || || |||||||||||||||| |||||||||||||||| Sbjct 661 ATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTG 720 Query 875 AAAGGGAAGGGTACTCACTGGTCGGGATAGACCCATTCAAATTACTCCAAAACAGCCAAG 934 |||| ||||| || || ||||||||||||||||| |||||| |||| |||||||| |||| Sbjct 721 AAAGAGAAGGATATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAG 780 Query 935 TGGTCAGCCTGATGAGACCAAATGAAAACCCAGCTCACAAGAGTCAATTGGTGTGGATGG 994 | ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 781 TATTCAGCCTAATCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGG 840 Query 995 CATGCCACTCTGCTGCATTTGAAGATTTAAGAGTATCAAGTTTCATAAGAGGAAAGAAAG 1054 | ||||||||||| |||||||| ||||||||||||||| | ||||||||||| || |||| Sbjct 841 CTTGCCACTCTGCCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAG 900 Query 1055 TGATTCCAAGAGGAAAGCTTTCCACAAGAGGGGTCCAGATTGCTTCAAATGAGAATGTGG 1114 || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 901 TGGTTCCAAGAGGAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGG 960 Query 1115 AAACCATGGACTCCAATACCCTGGAACTGAGAAGCAGATACTGGGCCATAAGGACCAGGA 1174 || | |||||||| | |||||||||||| || ||||| |||||||||||||||||||| | Sbjct 961 AAGCTATGGACTCTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAA 1020 Query 1175 GTGGAGGAAATACCAATCAACAAAAGGCATCCGCAGGCCAGATCAGTGTGCAGCCTACAT 1234 | || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1021 GCGGGGGAAATACCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACAT 1080 Query 1235 TCTCAGTGCAGCGGAATCTCCCTTTTGAAAGAGCAACCGTTATGGCAGCATTCAGCGGGA 1294 ||||||| || |||||||||||||||| ||||| |||||||||||||| |||| ||| Sbjct 1081 TCTCAGTACAAAGGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGG 1140 Query 1295 ACAATGAAGGACGGACATCCGACATGCGAACAGAAGTTATAAGAATGATGGAAAGTGCAA 1354 ||||||| ||||||||||| || |||||||| ||| | ||||| |||||||||||||||| Sbjct 1141 ACAATGAGGGACGGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAA 1200 Query 1355 AGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1260 Query 1415 CG 1416 || Sbjct 1261 CG 1262 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4670052145990