Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026437.1 Length=2151 Score E Sequences producing significant alignments: (Bits) Value seq208890 2096 0.0 >seq208890 Length=2206 Score = 2096 bits (2324), Expect = 0.0 Identities = 1745/2151 (81%), Gaps = 0/2151 (0%) Strand=Plus/Minus Query 1 ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGRAAAGGCA 60 |||||||| |||||||||||||||||||| || ||||| ||||| ||||| | ||| ||| Sbjct 2181 ATGGAAGATTTTGTGCGACAATGCTTCAACCCGATGATTGTCGAACTTGCAGAAAAAGCA 2122 Query 61 ATGAAAGAATATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGCAATATGCACA 120 |||||||| |||||||| |||| |||||| ||||| ||||| ||||| |||||||| || Sbjct 2121 ATGAAAGAGTATGGGGAGGATCTGAAAATTGAAACCAACAAATTTGCAGCAATATGTACT 2062 Query 121 CATTTGGAAGTTTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCA 180 || ||||| || |||||||||||||| ||||||||||||||| | |||| || |||||| Sbjct 2061 CACTTGGAGGTGTGTTTCATGTATTCAGATTTCCATTTCATCAATGAACAAGGCGAATCA 2002 Query 181 ATAATTGTAGAATCTGGTGACCCGAATGCACTATTGAAGCACCGATTTGAGATAATTGAA 240 ||| | |||||| || || || |||||||| | |||||| ||||||| ||||| || Sbjct 2001 ATAGTGGTAGAACTTGACGATCCAAATGCACTGCTAAAGCACAGATTTGAAATAATCGAG 1942 Query 241 GGAAGAGACCGAATCATGGCCTGGACAGTGGTGAACAGTATATGTAACACAACAGGGGTA 300 || |||||| ||| |||||||||||||| || |||||||| || ||||| || || | Sbjct 1941 GGGAGAGACAGAACAATGGCCTGGACAGTAGTAAACAGTATCTGCAACACTACTGGAGCT 1882 Query 301 GAGAAGCCTAAATTTCTTCCTGATTTGTATGATTACAAAGAGAACCGGTTCATTGAAATT 360 | || || || ||||| || |||||||||||||||||||||||| | ||||| |||||| Sbjct 1881 GGAAAACCGAAGTTTCTACCGGATTTGTATGATTACAAAGAGAACAGATTCATCGAAATT 1822 Query 361 GGAGTAACACGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAACAAAATAAAATCT 420 ||||| ||| |||| |||||||||||||||||||| || || ||||| || || |||||| Sbjct 1821 GGAGTGACAAGGAGAGAAGTCCACATATATTACCTTGAAAAGGCCAATAAGATTAAATCT 1762 Query 421 GAGAAGACACACATTCACATCTTTTCATTCACTGGAGAGGAGATGGCCACCAAAGCGGAC 480 ||||| |||||||||||||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 1761 GAGAACACACACATTCACATTTTTTCATTCACTGGGGAGGAAATGGCCACAAAGGCAGAC 1702 Query 481 TACACCCTTGACGAAGAGAGCAGGGCAAGAATCAAAACTAGGCTTTTCACTATAAGACAA 540 ||||| || ||||| || |||||||| || || ||||| ||||| || || ||||||||| Sbjct 1701 TACACTCTCGACGAGGAAAGCAGGGCTAGGATTAAAACCAGGCTGTTTACCATAAGACAA 1642 Query 541 GAAATGGCCAGTAGGAGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAGACA 600 |||||||||| || | || ||||||||||||||||||||||||||||||||||| ||| Sbjct 1641 GAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACA 1582 Query 601 ATTGAAGAAAAATTTGAGATTACAGGAACTATGCGCAAGCTTGCCGACCAAAGTCTCCCA 660 ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| Sbjct 1581 ATTGAAGAAAAATTTGAAATCACAGGAACTATGCGCAGGCTTGCCGACCAAAGTCTCCCA 1522 Query 661 CCGAACTTCCCCAGCCTTGAAAACTTTAGAGCCTATGTAGATGGATTCGAGCCGAACGGC 720 ||||||||| || ||||||| || |||||||||||||| ||||||||||| ||||||||| Sbjct 1521 CCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGC 1462 Query 721 TGCATTGAGGGCAAGCTTTCCCAAATGTCAAAAGAAGTGAACGCCAAAATTGAACCATTC 780 |||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||| || Sbjct 1461 TGCATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTGAATGCCCAAATTGAACCTTTT 1402 Query 781 TTGAGGACGACACCACGCCCCCTCAGATTGCCTGATGGGCCTCTTTGCCATCAGCGGTCA 840 ||| ||| |||||| | || ||| | | ||| |||| |||| ||| |||||||||| Sbjct 1401 CTGAAGACAACACCAAGACCAATCAAACTTCCTAATGGACCTCCTTGTTATCAGCGGTCC 1342 Query 841 AAGTTCCTGCTGATGGATGCTCTGAAATTAAGTATTGAAGACCCGAGTCACGAGGGGGAG 900 || ||||| |||||||||||| ||||||| || ||||||||||| |||||||| || || Sbjct 1341 AAATTCCTCCTGATGGATGCTTTGAAATTGAGCATTGAAGACCCAAGTCACGAAGGAGAA 1282 Query 901 GGAATACCACTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTGGAAAGAGCCT 960 || || ||| |||||||||| ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 1281 GGGATCCCATTATATGATGCGATCAAGTGCATAAAAACATTCTTTGGATGGAAAGAACCT 1222 Query 961 AACATAGTCAAACCACATGAGAAAGGCATAAATCCCAATTACCTCATGGCTTGGAAGCAG 1020 | |||||||||||||| || || || |||||| | |||||||| || | |||||||| Sbjct 1221 TATATAGTCAAACCACACGAAAAGGGAATAAATTCAAATTACCTGCTGTCATGGAAGCAA 1162 Query 1021 GTGCTAGCAGAGCTACAGGACATTGAAAATGAAGAGNNNNNNNNNNNNNNNNNNNNNNNN 1080 || || |||| | ||||||||||||||||| ||| Sbjct 1161 GTACTGTCAGAATTGCAGGACATTGAAAATGAGGAGAAGATTCCAAGAACTAAAAACATG 1102 Query 1081 NNNNNNNNNNNNNNNTTGAAGTGGGCACTCGGTGAAAATATGGCACCAGAAAAAGTAGAC 1140 |||||||||| || |||||||| ||||||||||| || |||||| Sbjct 1101 AAGAAAACGAGTCAACTGAAGTGGGCTCTTGGTGAAAACATGGCACCAGAGAAGGTAGAC 1042 Query 1141 TTTGATGACTGCAAAGATGTTGGAGACCTTAAACAGTATGACAGTGATGAGCCAGAGCCC 1200 ||||| |||||| ||| | | || | || || ||||| ||||| || || || Sbjct 1041 TTTGAAAACTGCAGAGACATAAGCGATTTGAAGCAATATGATAGTGAAGAACCTGAATTA 982 Query 1201 AGATCTCTAGCAAGCTGGGTCCAAAATGAATTCAATAAGGCATGTGAATTGACTGATTCA 1260 || || || |||||||| | || | ||| ||||| ||||| ||||| | ||||||||| Sbjct 981 AGGTCACTTTCAAGCTGGATACAGAGTGAGTTCAACAAGGCCTGTGAGCTAACTGATTCA 922 Query 1261 AGCTGGATAGAACTTGATGAAATAGGAGAAGATGTTGCCCCGATTGAACATATCGCAAGC 1320 ||||||||| || |||||||| ||||| || || ||||| ||||| || || |||||| Sbjct 921 GTCTGGATAGAGCTCGATGAAATTGGAGAGGACGTAGCCCCAATTGAGCACATTGCAAGC 862 Query 1321 ATGAGGAGGAACTATTTTACAGCAGAAGTGTCCCACTGCAGGGCTACTGAATACATAATG 1380 ||||| ||||| ||||| |||||||| |||||||| || || |||||||||||||||||| Sbjct 861 ATGAGAAGGAATTATTTCACAGCAGAGGTGTCCCATTGTAGAGCTACTGAATACATAATG 802 Query 1381 AAGGGAGTGTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGCCATGGATGACTTT 1440 ||||| || ||||| || || ||| |||||||||||||||||||||| ||||| || ||| Sbjct 801 AAGGGGGTATACATTAACACTGCCCTGCTCAATGCATCCTGTGCAGCAATGGACGATTTT 742 Query 1441 CAGCTGATCCCAATGATAAGCAAATGTAGGACCAAAGAAGGAAGACGGAAAACAAACCTG 1500 || || || || ||||||||||| || || || ||||| ||||| || ||||| || | Sbjct 741 CAACTAATTCCCATGATAAGCAAGTGCAGAACTAAAGAGGGAAGGCGAAAAACCAATTTA 682 Query 1501 TATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGATGTGGTGAACTTT 1560 ||||| ||||| ||||| ||||| ||||||||||| ||||| || || ||||| || ||| Sbjct 681 TATGGATTCATCATAAAGGGAAGATCTCATTTGAGGAATGACACAGACGTGGTAAATTTT 622 Query 1561 GTAAGTATGGAGTTCTCACTCACTGACCCGAGACTGGAGCCACACAAATGGGAAAAATAC 1620 || || |||||||| || ||||| ||||||||||| || ||||| |||||||| |||||| Sbjct 621 GTGAGCATGGAGTTTTCTCTCACAGACCCGAGACTTGAACCACATAAATGGGAGAAATAC 562 Query 1621 TGTGTTCTTGAAATAGGAGACATGCTCTTGAGGACTGCGATAGGCCAAGTGTCGAGGCCC 1680 ||||| ||||| |||||||| ||| | | || | ||| ||||||||| | || ||||| Sbjct 561 TGTGTCCTTGAGATAGGAGATATGTTACTAAGAAGTGCCATAGGCCAAATTTCAAGGCCG 502 Query 1681 ATGTTCCTATATGTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAA 1740 |||||| | |||||||| || || ||||| || ||| |||| ||||||||||| ||||| Sbjct 501 ATGTTCTTGTATGTGAGGACAAACGGAACATCAAAGGTCAAAATGAAATGGGGAATGGAG 442 Query 1741 ATGAGGCGCTGCCTTCTTCAGTCTCTTCAGCAGATTGAGAGCATGATTGAGGCCGAGTCT 1800 ||||| || ||||| |||||||| || |||||||| |||||||||||||| |||||||| Sbjct 441 ATGAGACGTTGCCTCCTTCAGTCACTCCAGCAGATCGAGAGCATGATTGAAGCCGAGTCC 382 Query 1801 TCTGTCAAAGAGAAAGACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCA 1860 || || |||||||||||||||||||| || || ||||| || ||||| ||| ||||||| Sbjct 381 TCAGTTAAAGAGAAAGACATGACCAAAGAGTTTTTTGAGAATAAATCAGAAGCATGGCCC 322 Query 1861 ATCGGAGAGTCACCCAGGGGAGTGGAGGAAGGCTCTATTGGGAAAGTGTGCAGGACCTTA 1920 || || ||||| |||| ||||||||| ||||| || ||||||||||| || ||||| || Sbjct 321 ATTGGGGAGTCCCCCAAGGGAGTGGAAGAAGGTTCCATTGGGAAAGTCTGTAGGACTCTA 262 Query 1921 CTGGCAAAATCTGTATTCAACAGTCTATATGCGTCTCCACAACTTGAGGGGTTTTCGGCT 1980 |||| || || |||||||| || || ||||| || |||||| | || || ||||| || Sbjct 261 TTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCACCACAATTGGAAGGATTTTCAGCG 202 Query 1981 GAATCTAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGNNNNNNNNNNN 2040 || || |||||| |||| || |||||||||| |||||||||||||| | Sbjct 201 GAGTCAAGAAAACTGCTCCTTGTTGTTCAGGCTCTTAGGGACAACCTCGAACCTGGGACC 142 Query 2041 NTCGATCTTGGGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTT 2100 | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 141 TTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTT 82 Query 2101 TTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAAGTAG 2151 ||||| ||||| |||||||||||||||||||| ||||||||| | || ||| Sbjct 81 TTGCTCAATGCGTCTTGGTTCAACTCCTTCCTGACACATGCATTAAAATAG 31 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6757689947410