Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028752.1 Length=27395 Score E Sequences producing significant alignments: (Bits) Value seq96645 791 0.0 seq139329 479 5e-131 seq92323 131 3e-26 seq132367 104 4e-18 >seq96645 Length=1578 Score = 791 bits (876), Expect = 0.0 Identities = 1131/1583 (71%), Gaps = 18/1583 (1%) Strand=Plus/Minus Query 15268 TATGAGAAGTCTACAGTACTACAAGCTGCTGGTCTTTGTGTAGTATGTGGCTCTCAAACA 15327 ||||| |||||||| || | |||||||||||| | ||||| || ||||| || ||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15328 GTTCTAAGATGCGGTGATTGTTTACGCAAACCGATGTTGTGCACTAAGTGTGCTTATGAT 15387 ||| || | ||||| || |||||| | | ||| | | ||||| ||||| || || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15388 CATGTGTTTGGCACTGATCATAAGTTCATTTTGGCTATTACACCTTATGTTTGTAACACA 15447 ||||| | || || | || || |||||| || |||| ||||| ||||| |||| | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15448 TCTGGTTGCAATGTAAACGACGTTACAAAACTGTATCTTGGAGGTTTGAATTATTACTGT 15507 |||||| | ||| || || ||||||||| ||| | | |||||| | || ||||| ||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15508 GTAGATCACAAACCACATTTGTCATTCCCACTGTGTTCAGCTGGTAATGTCTTTGGTTTG 15567 || ||||||||||| || |||||||| || ||| | ||||||||| |||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15568 TACAAAAGTTCTGCTTTGGGTTCCATAGACGTTGATGTTTTTAATAAGCTTTCTACTTCT 15627 ||||| ||| ||| | ||||| ||| ||||||| ||| || || ||| || ||| Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15628 GATTGGTCTGACATTCGTGACTATAAGTTAGCTAATGAAGCTAAAGAGTCACTAAGGCTA 15687 || ||| | | | || ||||| | |||||| | | |||||| || || | | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15688 TTTGCAGCTGAAACTGTCAAAGCTAAGGAGGAAAGTGTTAAGTCATCATATGCTTATGCC 15747 || || ||||||||||| ||||| ||||||||| |||||| | ||||||||||||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15748 ACCCTAAAGGAGATTGTAGGTCCTAAGGAACTTTTGCTYTCATGGGAAAGTGGAAAAGCC 15807 | |||||||| |||| || ||||||||| || | || ||||||| || Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATT 1035 Query 15808 AAACCACCGTTAAACCGTAATTCTGTATTTACTTGCTTCCAAATTACAAAGGACTCCAAG 15867 ||||| || | ||| | |||||||| || || || || || || | ||||| | || Sbjct 1034 AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAA 975 Query 15868 TTTCAAGTTGGTGAATTTGTGTTTGAGAAAGTAGATTATGGTTCTGATACGGTGACGTAC 15927 |||| | |||||||||||||||||| | ||| |||||| |||| | || || Sbjct 974 ATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTAT 915 Query 15928 AAATCCACTGCCACTACTAAGTTAGTACCAGGTATGTTATTTATTTTGACTTCTCATAAT 15987 ||| ||| |||||||||| | | ||| |||||| | ||| | ||||| ||||||||| Sbjct 914 AAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAAT 855 Query 15988 GTTGCTCCACTTAGAGCACCAACTATGGCTAATCAGGAAAAATATTCCACCATTTACAAG 16047 || |||||||| ||| | | | | || || || || || ||||| | |||| Sbjct 854 GTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAAG 795 Query 16048 TTGCACCCATCATTTAATGTTAGTGATGCTTATGCAAACCTTGTACCTTACTACCAACTC 16107 | | || | ||||| | || || ||| | | | || |||||||| ||| | Sbjct 794 CTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAATG 735 Query 16108 ATTGGTAAACAACGCATTACTACAATACAGGGTCCCCCTGGTAGTGGTAAGTCTCATTGT 16167 || ||||| ||| |||| || || || ||||| |||||||||||||| || |||||| Sbjct 734 ATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGT 675 Query 16168 TCTATCGGTATTGGTGTGTATTATCCTGGAGCAAGAATTGTGTTCACAGCTTGTTCACAT 16227 ||| ||| | ||| ||||||||||| ||| |||||||| | |||||| ||||||||| Sbjct 674 GTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACAT 615 Query 16228 GCTGCTGTTGATTCGTTGTGTGCAAAAGCTGCC-ACAGCTTACAGCGTTGACAAGTGTAC 16286 || ||||| ||| | || |||| ||||||| || | | ||| | ||||| || ||| | Sbjct 614 GCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTT-TAATGTTGATAAATGTTC 556 Query 16287 ACGTATTATTCCTGCACGTGCTAGAGTTGAGTGTTATAGTGGTTTTAAACCTAATAATAA 16346 | | || || ||| | | |||||||| ||||||| ||||||||||||||||||| Sbjct 555 AAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATAC 496 Query 16347 TAGTGCACAATATGTGTTTAGTACTGTTAATGCGCTACCTGAAGTTAACGCAGACATTGT 16406 | |||||||||| ||||| | || |||||||| | ||||||| |||| |||||||| Sbjct 495 CAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGT 436 Query 16407 TGTCGTAGATGAAGTGTCTATGTGCACTAACTATGATTTGTCTGTGATTAACCAGCGTAT 16466 || || ||||||||||| ||||| || |||||||| | || ||| ||| | ||| Sbjct 435 GGTTGTGGATGAAGTGTCAATGTGTACAAACTATGA--TCTCAGTG-TTATAAATAGTAG 379 Query 16467 A-TCA--TACAAACACATTGTGTATGTTGGTGATCCTCAACAGCTGCCAGCTCCTAGAGT 16523 | | | |||||||| ||||| ||||| ||||| || ||||| || ||||| |||||| Sbjct 378 ACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAAC 319 Query 16524 TCTTATCTCTAAAGGTGTTATGGAACCAATCGATTATAATGTTGTGACACAGCGTATGTG 16583 | || ||| ||| | | || || || ||||||||||| ||| | ||||| Sbjct 318 CTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTG 259 Query 16584 TGCTATAGGACCTGATGTCTTTTTACACAAGTGTTACAGATGTCCTGCTGAAATAGTTAA 16643 | ||||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 258 TAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAA 199 Query 16644 CACTGTTTCAGAGCTTGTTTACGAAAACAAGTTTGTACCTGTCAAAGAAGCTAGT--AAG 16701 || || || | |||||||| || || || ||| |||||||||| | ||| ||| Sbjct 198 AACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTG--AGTCAAAG 141 Query 16702 CAGTGCTTCAAAATCTTTGAACGTGGTAGTGTGCAGGTAGA---TAATGGTTCCAGTATA 16758 |||||||| || || |||| | || || ||| | || ||| ||| |||| Sbjct 140 CAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTC---TATA 84 Query 16759 AATAGACGCCAACTTGATGTTGTTAAGCGATTTATACATAAAAACCCTACATGGAGTAAA 16818 || | ||||| || ||||| ||| |||| || | || || | |||| ||||| Sbjct 83 AACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAA 24 Query 16819 GCTGTATTTATTTCACCTTATAA 16841 ||||| || || ||||| ||||| Sbjct 23 GCTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 479 bits (530), Expect = 5e-131 Identities = 748/1079 (69%), Gaps = 12/1079 (1%) Strand=Plus/Minus Query 14272 aaaTTCTATGGCGGTTGGGACAATATGCTAAAGAACTTGATTGCTGACGTTGACGATCCT 14331 ||||||||||| || |||||||||||||||||||||||||| || || || || | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14332 AAGTTGATGGGCTGGGACTATCCTAAGTGTGATAGAGCTATGCCTTCAATGATTCGTATG 14391 |||||||| ||||||||||| ||||| || | ||| ||||| ||||| || ||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 14392 CTGTCGGCCATGATTTTAGGTTCTAAACATGTTACATGTTGTACGGCTAGTGACAAATTC 14451 || |||||| | || |||||||| || || |||||||| |||||| | ||| Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 14452 TATAGACTTAGTAATGAGCTTGCTCAAGTTTTAACCGAAGTTGTTTACTCAAATGGTGGG 14511 ||| |||| ||||||| | |||||||| | || || ||||| | | | ||||| Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 14512 TTTTATTTTAAACCTGGTGGTACAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 14571 |||||| | |||||||||||||||||| Sbjct 834 TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCA 775 Query 14572 NNNTTTAATATATTTCAGGCTGTAAGTTCTAACATTAATCGCATTTTGAGCGTTAACTCG 14631 ||||| || ||||| ||||| | |||| |||| | || | ||| | || Sbjct 774 GCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTCA 715 Query 14632 TCAAATTGCAACAATCTTAATGTTAAGAAATTACAGAAACAACTTTATGACAATTGCTAT 14691 | || |||||| ||| |||||| ||||| | | ||||||||||| || Sbjct 714 AACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTTAC 655 Query 14692 AGAAATAGTAATGTCGATGAGTCTTTTGTGGATGACTTCTACGGTTATTTACAAAAGCAC 14751 | | ||| | ||| ||||| ||||| | || | | |||||||| ||||||| Sbjct 654 CGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGCAC 595 Query 14752 TTTTCTATGATGATTCTTTCTGATGATGGTGTTGTGTGCTATAATAAAATTTATGCTGAA 14811 || |||||||||||| | |||||||||||||| || || || || ||| ||||||||| Sbjct 594 TTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGAT 535 Query 14812 CTTGGTTACATTGCTGATATTAGTGCTTTTAAAGCCACTTTATATTATCAGAATGGTGTA 14871 |||||||| | || || ||| |||||||||| |||||| ||||||||||||| ||| Sbjct 534 CTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATGTG 475 Query 14872 TTCATGAGCACAGCTAAATGTTGGACTGAGGAAGACCTTTCTGTAGGACCTCATGAATTT 14931 || ||| |||||||| |||||| || ||| ||| ||| ||||| || |||||| Sbjct 474 TTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATTT 415 Query 14932 TGCTCACAGCACACTATGCAGATTGTAGATGAAAATGGTAAGTATTATCTACCATACCCA 14991 || ||||| ||||| | || ||||||| | ||||| | |||||| |||| || ||| Sbjct 414 TGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTATCCA 355 Query 14992 GATCCTAGCCGTATTATTTCTGCTGGTGTTTTTGTGGATGACATTACCAAGACTGAT--- 15048 || || | ||| | || || ||||||||||| ||||||||| ||||| || Sbjct 354 GACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACAAC 295 Query 15049 GCTGTCATTCTTTTAGAACGCTATGTTTCTCTGGCTATAGATGCATACCCATTGTCTAAA 15108 | | |||| ||| ||||| ||||| || || || || |||||||| ||| | | ||| Sbjct 294 GTTATCATGCTT---GAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Query 15109 CATCCTAAACCCGAGTATAGGAAAGTGTTTTATGCACTGTTAGACTGGGTTAAATATCTC 15168 || |||||||| | || ||||| || |||||| || | |||||||||||| | || Sbjct 237 CACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTA 178 Query 15169 AATAAAACTCTTAATGAAGGTGTTTTGGAGTCATTCTCTGTCACACTTTTA---GATGAA 15225 | || ||||| |||| ||| | | || || ||||||||||| | ||| |||| Sbjct 177 CAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGT 118 Query 15226 CAAGAGTCCAAGTTTTGGGATGAAAGCTTTTATGCTAGCATGTATGAGAAGTCTACAGTA 15285 ||||| || |||||| ||| || || || || | || ||||||||||| || Sbjct 117 CAAGA---TAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTT 61 Query 15286 CTACAAGCTGCTGGTCTTTGTGTAGTATGTGGCTCTCAAACAGTTCTAAGATGCGGTGA 15344 | ||||||||||| | ||||| || ||||| || ||||| || || | ||||| || Sbjct 60 TTGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq92323 Length=1240 Score = 131 bits (144), Expect = 3e-26 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23222 GGTAGACTGGCTGCTTTGAACGCATTTGTTGCTCAGACACTTACTAAGTATACTGAGGTG 23281 |||||| | || || | || || | ||| |||| || | ||| ||||| |||| || Sbjct 1240 GGTAGATTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTC 1181 Query 23282 CGTGCTTCTAGACAGCTTGCACAACAAAAAGTGAATGAATGTGTCAAATCCCAGTCTAAC 23341 ||| ||| || |||||| ||||||| ||||| ||||| ||||| ||||| | Sbjct 1180 AAGGCTAGTAGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGAT 1121 Query 23342 CGTTATGGTTTCTGTGGAAATGGCACACACATTTTCTCAATTGTGAATTCTGCTCCTGAA 23401 | ||||| |||||||||||||| |||||| | |||||| |||| |||||||| ||||| Sbjct 1120 AGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGAT 1061 Query 23402 GGCCTTGTTTTTCTTCACACTGTCTTGTTGCCCAC 23436 || || |||| ||||||| || ||| | || || Sbjct 1060 GGTCTACTTTTCTTTCACACAGTTTTGCTTCCTAC 1026 >seq132367 Length=1893 Score = 104 bits (114), Expect = 4e-18 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 23268 AGTATACTGAGGTGCGTGCTTCTAGACAGCTTGCACAACAAAAAGTGAATGAATGTGTCA 23327 ||||| |||| || ||| ||| || || ||| ||||||| |||||||| || | Sbjct 28 AGTATGCTGAAGTCAAGGCTAGTAGGCAACTGGCAATGGAAAAAGTTAATGAATGCGTGA 87 Query 23328 AATCCCAGTCTAACCGTTATGGTTTCTGTGGAAATGGCACACACATTTTCTCAATTGTGA 23387 |||| || || | | |||||||| ||||||||||| |||||| | |||||| |||| | Sbjct 88 AATCACAATCGGATAGGTATGGTTTTTGTGGAAATGGAACACACCTGTTCTCACTTGTCA 147 Query 23388 ATTCTGCTCCTGAAGGCCTTGTTTTTC-TTCACACTGTCTTGTTGCCCACGCAATATAAG 23446 ||||||| ||||| || ||| | ||| ||||||| || || | || || ||| | Sbjct 148 ATTCTGCACCTGATGG-TTTGCTCTTCTTTCACACAGTTCTGCTTCCTACCGAATGGGAA 206 Query 23447 GATGTTGAGGCGTGGTCCGGGCTTTGCGTTGATAATACAAACGGTTATGTGCTG 23500 || || || ||||| || | || ||| || |||| | | |||||| || Sbjct 207 GAAGTGACTGCATGGTCAGGTATATGTGTTAATGATACCTATGCATATGTGTTG 260 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87310602029870