Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028811.1 Length=27935 Score E Sequences producing significant alignments: (Bits) Value seq96645 625 5e-175 seq139329 594 9e-166 seq132367 98.7 2e-16 seq92323 95.1 2e-15 >seq96645 Length=1578 Score = 625 bits (692), Expect = 5e-175 Identities = 1085/1575 (69%), Gaps = 2/1575 (0%) Strand=Plus/Minus Query 14971 TATGAGAAGTCAACAATTTTACAGGCTGCAGGTTTGTGTGTTGTTTGTGGCTCTCAAACT 15030 ||||| ||||| || | || || ||||| ||| |||||||||||||||| || |||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15031 GTGCTTCGTTGTGGTGATTGCATACGTCGTCCTATGTTGTGTACTAAGTGTGCATATGAT 15090 || | ||||| || || || || | | ||| | | || || ||||| || || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15091 CATGTTGTTGGCACTACACATAAGTTCATCTTGTCTGTGACACCTTATGTCTGTAACAAC 15150 ||||| | || || | || || ||||| ||||| | ||||| ||||| |||| | | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15151 TCCGGTTGTACGGTCAATGATGTTACAAAGTTATGGCTTGGTGGACTTAGTTACTGGTGT 15210 |||||||| || |||||||||||||| || | | || || |||| || | ||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15211 ACTGAACACAGACCACAACTTGCATTCCCCCTCTGTTCGGGTGGTAATGTTTTTGGTTTG 15270 ||||| |||| ||||||| | ||||||| |||||| | ||||||||| |||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15271 TATAAAAGCGCTGCAACTGGTTCGCCAGATGTAGAGGTTTTTAATCAGTTAGCCATGTCT 15330 || || || ||||| |||||| |||||| || | ||| || | | || | || Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15331 GATTGGACTGATGTTAAGGATTACAAGCTTGCAAATTCTGCAAAGGACAGCCTTAGGTTG 15390 || ||||| |||| ||||||| || ||||| ||| | || || || | | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15391 TTTGCTGCTGAAACTGTAAAAGCTCGTGAGGAGAGTGTAAAATCCCAGTATGCTAGTGCA 15450 || |||||||||||||| ||||| ||||| ||| ||| | | |||||| ||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15451 ACTCTTAAGGAGATTATTGGTCCTAAAGAATTGCTACTTAGCTGGGAACCTGGTAAGGTT 15510 | | |||||| || | || ||||| ||| | |||| |||||| | |||| || Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATT 1035 Query 15511 AAACCACCTCTCAACAGGAACTCTGTTTTCACGTGTTTTCAGATTTCAAAAGATTCTAAG 15570 ||||| || || ||||| || ||||||||||| ||||||||||| || ||| |||| Sbjct 1034 AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAA 975 Query 15571 TATCAGGTCGGCGAGTTTACTTTTGAAAAGGCAGACTACGATTCCGACACTGTTATTTAT 15630 |||| | || || ||| ||||| || |||| || | | || ||||| ||| Sbjct 974 ATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTAT 915 Query 15631 AAATCTACATCCACTAGCAAATTATGTCCAGGCATGCTTTTTGTCCTAACATCACATAAT 15690 ||| ||| ||||| || | || || ||| ||||||| | ||||| |||||| Sbjct 914 AAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAAT 855 Query 15691 GTAGCACCATTGAGAGCACCAACTATTGCCAATCAAGAGCGATACTCATCTATATTTAAG 15750 || ||| | | ||| | | | | ||| |||||| ||| | |||| ||| Sbjct 854 GTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAAG 795 Query 15751 TTGCATCCTGCATTTAATATAGCTGAAGCTTATGCGCAATTGGTGCCATATTATCAACTC 15810 | ||||| | ||||| ||||| ||||| ||| | ||||||||| || |||||| | Sbjct 794 CTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAATG 735 Query 15811 ATAGGCAAACAGCGTATTACCACTATACAGGGTCCTCCTGGTAGTGGTAAGTCTCATTGC 15870 || || || || |||| ||||| || |||||||||||||||||||| || ||||| Sbjct 734 ATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGT 675 Query 15871 GTTATAGGCTTAGGGTTGTACTTTCCTGGTGCGCGCATAGCATTTACTGCTTGTTCACAT 15930 |||||||| || || ||||| | |||| || | || | | || || ||||||||| Sbjct 674 GTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACAT 615 Query 15931 GCAGCTGTTGACTCCCTTTGTGTTAAAGCATTTACTGCATATGCACG-TGATAGGTGTAG 15989 |||||||| || | | |||| ||||| || | | | | | ||||| ||| Sbjct 614 GCAGCTGTGGATGCTTTATGTGAAAAAGC-TTCCAAGAACTTTAATGTTGATAAATGTTC 556 Query 15990 TCGCATAATTCCTGCTAGAGCGCGTGTGGATTGTTTCAATGGTTTTAAAGCCAACAATAA 16049 | ||||| ||| ||| | || ||||||| | ||||||||| | || |||| Sbjct 555 AAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATAC 496 Query 16050 TAGTGCACAGTACATCTTTTCTACTGTTAATGCATTGCCAGAGTGTAACGTTGACATAGT 16109 | |||||| || | |||| || |||||||| ||||| || |||| |||||| || Sbjct 495 CAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGT 436 Query 16110 TGTTGTTGACGAAGTCTCTATGTGCACCAATTATGACCTCTCCATTATCAACAGTCGTAT 16169 ||||| || ||||| || ||||| || || ||||| ||| |||| || ||| | | Sbjct 435 GGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT 376 Query 16170 CTCCTATAGACATATTGTCTATGTCGGAGATCCTCAGCAATTACCGGCACCTCGTACTAT 16229 ||| | ||||||||| ||||| || || || || ||| | || |||||| | || | Sbjct 375 GAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTT 316 Query 16230 GATTACTAAGGGTGTACTTGAACCTGCTGACTACAATGTTGTTACACAACGTATGTGTAG 16289 ||||| ||||||| ||| | |||| |||||||||||||| || || | ||||||| Sbjct 315 GATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAA 256 Query 16290 CGTGGGTCCTGACATCTTTTTGCATAGATGCTTTAGATGTCCTGCTGAGATTGTTAACAC 16349 | || ||||| | |||||||| | ||| | ||||| || ||||| |||||||| || Sbjct 255 ACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAAC 196 Query 16350 TGTTTCAGAGCTTGTTTATGAAAATAAGTTCAAGCCTGTTAATGCTGAGAGCAAACAGTG 16409 || || | ||||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 195 AGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAGTG 136 Query 16410 TTTTAAGCTTTTTGAACGTGGTAACGTCCATGTTGATAATGGCTCTAGTATTAATAGGAG 16469 |||||| | |||| | || | || || |||| | |||| ||| || | | Sbjct 135 CTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTATAAACAACAA 76 Query 16470 ACAGCTTGATGTCGTTAAGATGTTTCTTGCTAAGAATCCTACTTGGTCCAATGCAGTTTT 16529 || || || || || ||| ||| | || | ||||| | ||| || || ||||| Sbjct 75 GCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAGCTGTTTT 16 Query 16530 TATTTCACCTTATAA 16544 || ||||| ||||| Sbjct 15 CATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 594 bits (658), Expect = 9e-166 Identities = 782/1076 (73%), Gaps = 6/1076 (1%) Strand=Plus/Minus Query 13975 AAGTTTTATGGCGGTTGGGACAATATGTTGAACAACCTTATATCTGGTGTTGAAAATCCA 14034 || || ||||| || |||||||||||| | || ||| | || | ||| || ||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14035 CACCTTATGGGTTGGGACTATCCTAAGTGTGACCGTGCTCTACCAAATATGATTAGAATG 14094 | ||||| ||||||||||| ||||| ||||||||| | || |||||||| ||||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 14095 ATTTCTGCAATGATTCTGGGTTCTAAGCACACCACATGCTGTAGCTCTACAGATCGTTAT 14154 |||||| ||| | ||||||||||||||| || |||| || ||| | | Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 14155 TACAGATTATGCAATGAGTTGGCTCAAGTGCTCACAGAGGTTGTTTACTCCAATGGTGGT 14214 || || | | |||||||| |||||||| |||||||||||||| | | | ||||| Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 14215 TTCTATATGAAGCCTGGTGGTACAACTTCTGGTGATGCTACTACAGCCTATGCAAATTCT 14274 || ||||| || ||||||||||||||| |||||| | ||||||||| ||||| || || Sbjct 834 TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCA 775 Query 14275 GTTTTTAACATCTTTCAGGCTACTAGCGCAAACATTAACAGACTTCTTAGT-GTTGACAG 14333 | ||||||||||||||| ||| | || || |||||| || ||||| ||||| Sbjct 774 GCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCT-CTTAGGAGTTGATTC 716 Query 14334 TAATAACTGTAACAATCTTGGTGTGAAGGCCCTGCAGCGTCGTTTGTACGACTGTTGTTA 14393 || | |||||||||| || || |||||| | ||||| | || ||| |||||| Sbjct 715 AAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTTA 656 Query 14394 TAGGTCTTCTCA-TGTCGATGATGATTTTGTTACGGAGTATTACAATTATCTTAGAAAGC 14452 | | | || ||| ||||| || ||||| || |||| | |||| | ||||||| Sbjct 655 CCG-TAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGC 597 Query 14453 ACTTTTCTTTGATGATATTGTCAGACGATGGTGTTGTCTGTTATAATAGTGAGTATGCTG 14512 |||| ||| ||||||| ||||| || |||||||| || ||||| || | || ||||||| Sbjct 596 ACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTG 537 Query 14513 CACTTGGCTATGTTGCCGATATTAGTGCCTTTAAAGCCACTTTGTATTACCAGAACAATG 14572 ||||| ||||| || || ||| |||| ||||| |||||| | ||||| |||||||||| Sbjct 536 ATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATG 477 Query 14573 TCTTCATGAGTACGTCCAAATGCTGGGTTGAACCAGACATTAATAAGGGACCTCATGAGT 14632 | || ||| ||| | || || ||||| |||||||| ||||| |||||| || || | Sbjct 476 TGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAAT 417 Query 14633 TTTGTTCACAGCATACAATGCAAATAGT-GGATGAGAATGGTAAGTATTATCTACCATAC 14691 |||||||||| || ||| | ||||| || ||| ||| |||| | |||||| |||| || Sbjct 416 TTTGTTCACAACACACATTACAAATTGTAGGACCAGA-TGGTGACTATTATTTACCTTAT 358 Query 14692 CCAGATCCATCTAGGATTTTGTCCGCTGGTGTTTTTGTCGATGATATTGTCAAGACAGAC 14751 ||||| |||||||| |||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct 357 CCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGAC 298 Query 14752 CCCGTCATTTTGATGGAGCGTTATGTGTCATTGGCTATTGATGCATACCCCTTGTCCAAG 14811 ||| || || | || ||||||||||| | || ||||||||||| || | | || Sbjct 297 AACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Query 14812 CATGAGAATCCAGAATACCGTAAGGTTTTCTACGCTCTCTTAGATTGGGTAAAGCATCTT 14871 || || || | ||||| || || ||||| || | | || ||||| || || || Sbjct 237 CACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTA 178 Query 14872 AATAAGACGTTACACGCAGGCATCCTGGATGCATTTTCCATAACGATGTTGGAAGACTCT 14931 | ||||| || | || || || || ||| | || || | || ||||| || || | Sbjct 177 CAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGT 118 Query 14932 GCTGCCAAATTTTGGGATGAGTCTTTTTATGCCGGTTTATATGAGAAGTCAACAATTTTA 14991 | ||||||||| |||| || || ||| || | || |||||||| || |||| Sbjct 117 CAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTTTG 58 Query 14992 CAGGCTGCAGGTTTGTGTGTTGTTTGTGGCTCTCAAACTGTGCTTCGTTGTGGTGA 15047 || ||||| || |||||||||||||||| || ||||||||| | ||||| || || Sbjct 57 CAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq132367 Length=1893 Score = 98.7 bits (108), Expect = 2e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23594 GCTTTTGTGGCCCAACAGTTGACTAAGTACACGGATGTCAGAGCTTCTAGGCAGTTAGCA 23653 |||| |||| | ||| ||||| |||| | || |||| ||| |||||| | ||| Sbjct 3 GCTTATGTGTCGCAAACTTTGACCCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTGGCA 62 Query 23654 CAGGATAAAATTAATGAATGCGTTAAATCTCAGTCATTCCGTTACGGTTTTTGCGGCAAC 23713 ||| ||| ||||||||||||| ||||| || || | || |||||||| || || Sbjct 63 ATGGAAAAAGTTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTTGTGGAAAT 122 Query 23714 GGTACACATGTGTTTTCCGTTGTTAATGCCGCTCCTGATGGAATGATGTTTTTCCATTCA 23773 || ||||| |||| || |||| ||| | || |||||||| || | || || || || Sbjct 123 GGAACACACCTGTTCTCACTTGTCAATTCTGCACCTGATGGTTTGCTCTTCTTTCACACA 182 Query 23774 GTTTTACTCCCTACTGCTTATATGGAAGTGGCAGCATTTTCAGGGCTTTGTGTT 23827 ||| | || ||||| | | |||||| | |||| ||||| | |||||| Sbjct 183 GTTCTGCTTCCTACCGAATGGGAAGAAGTGACTGCATGGTCAGGTATATGTGTT 236 >seq92323 Length=1240 Score = 95.1 bits (104), Expect = 2e-15 Identities = 466/730 (64%), Gaps = 30/730 (4%) Strand=Plus/Minus Query 23579 TTAGCTGCGCTGAATGCTTTTGTGGCCCAACAGTTGACTAAGTACACGGATGTCAGAGCT 23638 ||||| || || ||||||| |||| | ||| || ||| |||| | || |||| ||| Sbjct 1234 TTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTCAAGGCT 1175 Query 23639 TCTAGGCAGTTAGCACAGGATAAAATTAATGAATGCGTTAAATCTCAGTCATTCCGTTAC 23698 |||||| | ||| ||| ||| ||||||| || || ||||| ||||| | || Sbjct 1174 AGTAGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGATAGGTAT 1115 Query 23699 GGTTTTTGCGGCAACGGTACACATGTGTTTTCCGTTGTTAATGCCGCTCCTGATGGAATG 23758 || || || || || || ||||| | || || |||| ||| | || |||||||| | Sbjct 1114 GGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGATGGTCTA 1055 Query 23759 ATGTTTTTCCATTCAGTTTTACTCCCTACTGCTTATATGGAAGTGGCAGCATTTTCAGGG 23818 | || || || ||||||| || ||||| | | |||||| | |||| ||||| Sbjct 1054 CTTTTCTTTCACACAGTTTTGCTTCCTACAGAATGGGAAGAAGTGACGGCATGGTCAGGA 995 Query 23819 CTTTGTGT---TGAAGGTAATGGCTATGTCCTCAGAGACACAGGTAATGTACTCTTTGAG 23875 | ||||| ||| | ||| ||||| | | |||| | | || | ||| || Sbjct 994 ATATGTGTCAATGACACTTATGCATATGTGTTGAAAGACTTTGATCATTCTAT-TTTCAG 936 Query 23876 A-AGAATGGTCAGTACCTCATTACTGCTAGGAAGATGTTTGAACCACGTGTTCCACAGAC 23934 | |||||| ||| | | ||| || | || |||||| |||| | || |||| Sbjct 935 TTATAATGGTACGTATATGGTGACTCCTCGTAATATGTTTCAACCTAGAAAACCTCAGAT 876 Query 23935 ATCTGACTTTGTGCAAATTACAGGCTGTGATGTTGTATATTTGAATGTGAC----TCGTG 23990 ||| || ||||||||||| | ||||| || || | |||| || || Sbjct 875 GAGTGATTTCGTGCAAATTACGAGTTGTGAAGTGACATTTCTGAACACTACATATACGAC 816 Query 23991 ATGAACTGCCTACTGTGATACCAGATTATATTGATGTTAATAGCACTGTCGAGGACATAC 24050 || | | || |||||| ||||||||||| |||| | ||| | | || || | Sbjct 815 AT-TTCAGGATATTGTGAT---TGATTATATTGACATTAACAAGACTATTGCTGATATGC 760 Query 24051 TT-AGTAAACT--CCCTAACAGGACTACACCTGAGTTTG------ACCTCGACATTTTCA 24101 || | || | || ||| || |||||||| || | | || || ||||||| Sbjct 759 TTGAACAATATAACCGTAATTACACAACACCTGAATTAGATTTACAGCTGGAAATTTTCA 700 Query 24102 ATGCTACATACCTCAACTTGACTGGTGAGATAG--CAGATTTAACGGCTAGGTCCGAGTC 24159 | ||| | ||| | |||| || |||| || | ||| || | || Sbjct 699 ACCAGACAAGGTTAAACCTAACTGCAGAAATAGACCAACTCGAAC--ACAGAGCAGACAA 642 Query 24160 ACTTA--AGAATACTACTTTAGAGTTAAAGGAGCTTATTGCTAATATTAATGCTACACTT 24217 |||| | ||| || | || || || || |||| ||| ||||| || ||| Sbjct 641 CCTTACTATTATAGCACAT--GAACTACAGCAGTACATTGACAATCTTAATAAGACGCTT 584 Query 24218 GTTGACCTTGAATGGCTTAACAGAGTTGAAACGTATATCAAGTGGCCTTGGTGGGTTTGG 24277 ||||||||||||||||| ||||| ||||||| ||| | || |||||||||| || ||| Sbjct 583 GTTGACCTTGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCTTGGTATGTATGG 524 Query 24278 CTCATCATTG 24287 || | |||| Sbjct 523 CTATTAATTG 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 89033963572970