Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028824.1 Length=26975 Score E Sequences producing significant alignments: (Bits) Value seq96645 767 0.0 seq139329 636 3e-178 seq191992 93.3 7e-15 >seq96645 Length=1578 Score = 767 bits (850), Expect = 0.0 Identities = 1125/1581 (71%), Gaps = 14/1581 (1%) Strand=Plus/Minus Query 14984 TATGAAAAGTCTACTGTGCTTCAAGCAGCTGGTATGTGTATTGTTTGTGGTTCACAAACT 15043 ||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15044 GTTCTTAGATGTGGTGATTGTTTACGTCGTCCCTTATTATGTACAAAATGTGCTTATGAT 15103 ||| | | || || || |||||| | | || | |||| || || || || || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15104 CATGTTGTAGGTACCACTCATAGGTTTATTTTATCCATTACGCCCTATGTATGTAA-TAC 15162 ||||| | ||||| | || | || ||| | || || || || ||||| |||| || Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15163 ATCTGGTTGTAATGTTAATGATGTTACCAAGTTGTTTTTGGGTGGTCTTAACTATTATTG 15222 | |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 1394 AA-TGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTG 1336 Query 15223 TCATGACCATAAGCCTCAGCTCTCATTTCCACTTTGTGCTAACGGTAATATTTTTGGCCT 15282 | ||| || || || || | ||||| || || |||||||| |||||| | ||||| || Sbjct 1335 TACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCT 1276 Query 15283 CTATAAAAATTCTGCGGTTGGATCCTTAGATGTTGAAGTTTTTAATAAACTTGCTATGTC 15342 || || | | ||| |||| || ||||||||| | ||| || ||||||||| | || Sbjct 1275 GTACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTC 1216 Query 15343 TGACTGGTCTGATGTCAGTGATTATAAATTGGCCAATGATGTCAAAGAATCATTGCGACT 15402 |||||| | |||| ||||||||| | || ||| | || |||||||| || | | Sbjct 1215 AGACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAAT 1156 Query 15403 CTTTGCAGCTGAAACTATTAAAGCTAGGGAGGAGAGTGTTAAGTCTTCTTATGCGTGTGC 15462 || || ||||||||| | ||||| | |||||| |||||| || ||||| | ||| Sbjct 1155 TTTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGC 1096 Query 15463 TACTCTCAAGGAGATTATAGGTCCTAAAGAACTACTGTTGCAATGGGAAGTTGGGAAGGC 15522 | | |||||| || | || ||||| ||| | | | ||||||||| ||| Sbjct 1095 CATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGAT 1036 Query 15523 TCGACCTCCTCTTAACAGGAATTCTGTTTTTACTTGTTTTCAGATTAGTAAAGACTCTAA 15582 | |||||| |||||||| ||||||||||| || ||||||||||| | || || |||| Sbjct 1035 TAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAA 976 Query 15583 GTGGCAAGTTGGCGAGTTTACATTTGAGAAGCTCGACTATGGCTCTGACACTGTGTGTTA 15642 || | || || ||| |||||| || || ||||| ||| |||| | || Sbjct 975 AATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTA 916 Query 15643 TAAGTCTAATGTTACTGCCAAGCTTGTTCCTGGCATGATTTTTGTACTTACATCTCATAA 15702 ||| || | ||| | ||||| | || || ||||||||||| | ||||||||||| Sbjct 915 TAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAA 856 Query 15703 TGTCCTTTCGCTTAAAGCACCTACTATTGCCAATCAAGAGCGGTATTCAACTATTTATAA 15762 ||| | | |||||||| | | | | ||| |||||| ||| || || | || Sbjct 855 TGTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAA 796 Query 15763 GTTGTACCCATCTTTGAATGTTGATGATGCGTATTCATCTTTGGTTCCGTATTACCAACT 15822 | | || || | || || | | || || ||| | | ||||| || || || ||| | Sbjct 795 GCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAAT 736 Query 15823 TATTGGCAAGCAAAAGATTACTACAATACAAGGACCTCCTGGTAGTGGCAAATCGCATTG 15882 || || |||||||| |||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 735 GATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTG 676 Query 15883 TGTTATTGGTTTAGGGTTGTATTATCCTAGTGCACGTATTGTGTTTGCTGCTTGTTCACA 15942 |||||| ||||| || |||||||||||| || | ||||| | | || |||||||| Sbjct 675 TGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACA 616 Query 15943 CGCTGCCGTTGACTCTTTATGTCATAAAGCTGCTAAAGCCTATAGTGTAGACAGATGCTC 16002 || || || || |||||||| | |||||| | || || || ||| || | ||| || Sbjct 615 TGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTC 556 Query 16003 ACGTATTATTCCTGCACGAGCTCGTGTTGAGTGCTATAGTGGTTTTAAACCGAATAACAC 16062 | | || || ||| | || | ||||| || |||| ||||||||||| ||||| || Sbjct 555 AAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATAC 496 Query 16063 TTCAGCCCAGTACATCTTTTCAACTGTTAATGCTTTGCCAGAGGTTAATGCCGACATTGT 16122 || || || | |||| || |||||||||||||| || | ||| |||||||| Sbjct 495 CAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGT 436 Query 16123 TGTCATTGATGAAGTGTCTATGTGCACTAACTATGATTTGTCTATTGTTAATGCTCGTGT 16182 || | ||||||||||| ||||| || ||||||||| | | || | ||| | | | Sbjct 435 GGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT 376 Query 16183 -AGCATATAAACATATTGTCTATGTTGGCGATCCCCAGCAGCTACCTGCACCTAGGACTA 16241 ||| || ||||||||||| ||||| || || || || || || || |||||||| || Sbjct 375 GAGC-TACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCT 317 Query 16242 TGATAACGCGTGGTGTGTTACAACCTGAAGATTACAACGTTGTCACCCAGCGTATGTGTG 16301 |||| | ||| | || ||||| || ||||| ||||| || ||| | |||||| Sbjct 316 TGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTA 257 Query 16302 GTGTAGGACCTGATGTTTTCTTGCATAAGTGTTATCGGTGCCCTGCTGAGGTTGTTAACA 16361 ||||||||||||| || ||||| || ||||| | ||||| ||||| ||||||| | Sbjct 256 AACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAA 197 Query 16362 CTGTATCTGAACTTGTTTATGAAAACAAGTTTAAACCAGTTAAAGACCACAG-CAAA-CA 16419 | || |||| ||||||||||| || || ||| ||| || || || || |||| || Sbjct 196 CAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAA--CCCTGAGTCAAAGCA 139 Query 16420 GTGTTTTAAGATGTTTGTTAAGGGTAATGTTCAGATTGA---TAACGGCTCTAGTGTTAA 16476 ||| |||||||||||||| || || | ||||||||||| ||| |||| | | || Sbjct 138 GTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAA---CTCTTCTATAAA 82 Query 16477 TAAGAAGCAACTTGAGGTCGTTAAAGCCTTTATTGCTAAAAATCCTAAATGGAGTCGTGC 16536 || |||||||| ||||| || || || ||| | || | ||||| | |||| || || Sbjct 81 CAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAGC 22 Query 16537 TGTGTTTATTTCTCCATACAA 16557 ||| || || || || || || Sbjct 21 TGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 636 bits (704), Expect = 3e-178 Identities = 780/1060 (74%), Gaps = 4/1060 (0%) Strand=Plus/Minus Query 13988 AAGTTTTACGGTGGTTGGGACAATATGCTTAAGAATTTGATGAATGATGTTGACAATGGT 14047 || || || ||||| |||||||||||||| ||||| |||||| ||||| || |||||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14048 GCACTTATGGGCTGGGATTATCCTAAATGTGACAGAGCTATGCCTAGTATGATCCGCATG 14107 | ||||| ||||| ||||| || || ||| | ||| |||||| |||||| || ||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 14108 CTTGCTGCTATGGTTCTTGGATCAAAGCATGTTACATGTTGTACAGACAGTGATAGGTTT 14167 | |||| ||||| | || || ||||| || ||||||||| | ||||||||||| Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 14168 TACAGACTTTCTAATGAACTTGCACAAGTTCTTAATGAGGTTGTACATTCCAATGGAGGT 14227 || |||| |||||||| | || ||||| || | ||||||||||||| | || || Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 14228 TTCTATGTAAAACCCGGTGGCACTACATCAGGTGATGCTACAACTGCTTATGCAAACTCT 14287 || ||| ||||||| ||||| || || ||||| | ||| || || ||||| ||||| Sbjct 834 TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCA 775 Query 14288 GTCTTTAATATTTTCCAGGCAGTTAGCTCTAATATTAATAGGCTTCTTTCTGTTGATAGT 14347 | ||||| || || || || ||| ||||| |||| | ||| | |||||| Sbjct 774 GCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTCA 715 Query 14348 AATGTGTGTAACAAT-TTATATGTTAAAAAGCTTCAGCGCTCTATCTATGACAATTGTTA 14406 || ||||||||| ||| | ||||| | |||||| || |||||||||||||| Sbjct 714 AACACCTGTAACAATGTTACA-GTTAAGGCCATACAGCGCAAGATATATGACAATTGTTA 656 Query 14407 TAGATCTAGTGCTGTTGATGACAATGTTGTTACAGAATTTTATAACTATCTTAAGAA-GC 14465 | ||| ||| |||||| | |||| |||| || || ||| ||||||| || Sbjct 655 CCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTAT-TTAAGAAAGC 597 Query 14466 ATTTTTCTATGATGATTTTGTCTGATGATGGCGTTGTTTGCTACAATAAGGAGTATGCAG 14525 | || |||||||||||||||||||||||||| || ||||| ||||| || || ||||| | Sbjct 596 ACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTG 537 Query 14526 CTTTGGGTTATGTTGGTGACATCTCTGCTTTTAAGGCAACTTTGTACTATCAGAACAATG 14585 | | |||||||| | ||||| |||||||||||| ||| | || ||||||||||||| Sbjct 536 ATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATG 477 Query 14586 TGTTTATGAGTACAGCTAAGTGTTGGGTTGAAGAAGATTTATCTGTTGGACCTCATGAGT 14645 |||||||| |||||||||||||||||| ||| |||| | ||| ||||| || || | Sbjct 476 TGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAAT 417 Query 14646 TTTGCTCACAACACACTATGCAAATAGTTGATTCTGATGGTGAATATTATTTGCCTTACC 14705 |||| ||||||||||| | ||||| || | | |||||||| |||||||| ||||| | Sbjct 416 TTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTATC 357 Query 14706 CAGACCCTAGCCGTATTCTTAGTGCTGGTGTCTTTGTAGATGATATTGTGAAAACTGACC 14765 ||||||| | ||| | || ||||| ||||| ||||| ||||| || || ||| Sbjct 356 CAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACA 297 Query 14766 CCGTAATTTTACTTGAACGTTATGTGTCTCTTGCTATTGATGCATACCCATTATCTAAGC 14825 ||| || | ||||||||||||||||| || || ||||||||||| ||| | | || | Sbjct 296 ACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAAC 237 Query 14826 ATCCCAATCGTGAATATAGGAAAGTTTTCTATGTTCTTTTAGACTGGGTTAAACACTTAC 14885 | || || | || ||| ||||| ||||||| | | ||||||||||||||| ||| Sbjct 236 ACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTAC 177 Query 14886 ATAATACACTTAACCAGGGTATCCTTGAAACTTTTTCTGTGACATTATTGGATGATGTTC 14945 | || || || || ||||| ||||| | || ||||| || | || || |||| || Sbjct 176 AGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGTC 117 Query 14946 AGAGTAAGTTCTGGGATGAGGCTTTTTATGCTGGTATGTATGAAAAGTCTACTGTGCTTC 15005 | ||| || ||| ||||| || || || || | || || ||||||||||| | | Sbjct 116 AAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTTTGC 57 Query 15006 AAGCAGCTGGTATGTGTATTGTTTGTGGTTCACAAACTGT 15045 |||| ||||| |||||| |||||||||||||||||||||| Sbjct 56 AAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGT 17 >seq191992 Length=1482 Score = 93.3 bits (102), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 20042 GATGGTAATGTTATGCATGCCAACTATATATTTTGGCGCAATTCTACTATTATGACAATG 20101 ||||| ||| | ||||||||||| |||||||||||| | ||||| || |||||| || || Sbjct 33 GATGGGAATATAATGCATGCCAATTATATATTTTGGAGAAATTCCACAATTATGGCATTG 92 Query 20102 TCATATAATTCAGTTCTTGATTTGTCAAAATTTAGGTGT 20140 ||| |||||||||| || ||| | ||||||| |||| Sbjct 93 TCACATAATTCAGTCCTAGATACTCCGAAATTTAAGTGT 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 85970209718570