Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028833.1 Length=27783 Score E Sequences producing significant alignments: (Bits) Value seq139329 675 0.0 seq96645 468 9e-128 seq34658 82.4 1e-11 >seq139329 Length=1076 Score = 675 bits (748), Expect = 0.0 Identities = 794/1066 (74%), Gaps = 6/1066 (1%) Strand=Plus/Minus Query 13720 CTAAATTTTATGGTGGTTGGGATAACATGTTGCGTACTTTAATTGATGGTGTTGACAACC 13779 ||||||| |||||||| ||||| || ||| | | || || | ||| || || Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 13780 CTTGTCTTATGGGTTGGGACTACCCTAAGTGTGATAGAGCTTTGCCTAACATGATTCGCA 13839 |||| | ||||| |||||||| || ||||| || | ||||||||||| ||||| || | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 13840 TGATCTCAGCTATGATTTTGGGCTCTAAGCACGTTAATTGTTGTACTGCTTCTGATAGGT 13899 || || || ||| | ||||| ||||||||| || ||||||||| | |||||||| Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 13900 ACTATAGGCTTTGTAATGAGCTTGCACAAGTGCTTACTGAAGTTGTTTACTCCAATGGTG 13959 |||| | || | ||||||| | || ||||| || || || ||||| | | | |||| Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 13960 GTTTTTATTTTAAACCTGGTGGTACCACTTCTGGTGACGCTACTACAGCCTATGCAAATT 14019 | |||||| | |||||||||||||| ||| |||||||| ||||||||| ||||| || | Sbjct 836 GCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACT 777 Query 14020 CTGTGTTTAATATCTTTCAGGCTGTTAGTGCTAACATTAATAGGTTGCTTGGTGTTGATT 14079 | | ||||| |||||||| |||||| |||||| |||| | | | | || ||||||| Sbjct 776 CAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATT 717 Query 14080 CCAACGCTTGCAACAATAATACTGTTAAGCACTTACAGCGTAGACTTTATGACAATTGCT 14139 | ||| | || |||||| ||| |||||| | ||||||| | | ||||||||||| | Sbjct 716 CAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 14140 ACCGTCTTTCAAATGTCGATGATGAGTTTGTTAATGACTATTATGGTTATTTGCAAAAGC 14199 ||||| | | ||| ||||| || ||||| || |||| | ||||||| ||||| Sbjct 656 ACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGC 597 Query 14200 ATTTTTCGATGATGATCTTGTCTGATGACGGTGTTGTTTGTTACAATAAAGATTATGCAG 14259 | || || |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| | Sbjct 596 ACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTG 537 Query 14260 ACCTTGGTTATGTGGCAGATATTGGTGCTTTTAAGGCTACATTGTATTATCAGAACAATG 14319 | ||||||||||| ||||| ||||||||||||||||| || | |||||||||||||||| Sbjct 536 ATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATG 477 Query 14320 TGTTTATGAGCACTGCTAAGTGTTGGGTTGAACCGGATGTTAATAAGGGTCCTCATGAGT 14379 |||||||| || |||||||||||||| ||||| ||| ||||| ||| || || || | Sbjct 476 TGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAAT 417 Query 14380 TTTGTTCTCAGCACACAATGCAAGTTGTTG-ATGAGAACGGTAAGTACTTTTTGCCCTAT 14438 ||||||| || |||||| | ||| |||| | | ||| ||| | || | ||| || ||| Sbjct 416 TTTGTTCACAACACACATTACAAATTGTAGGACCAGAT-GGTGACTATTATTTACCTTAT 358 Query 14439 CCCGACCCTTCACGTATCTTATCTGCTGGTGTTTTTGTCGATGATGTGGTTAAAACTGAC 14498 || ||||| || | || || || || ||||||||||| ||||| | ||||| || ||| Sbjct 357 CCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGAC 298 Query 14499 CCTGTTATTTTGCTAGAGCGTTATGTGTCTTTGGCTATAGATGCATACCCTCTATCTAAG 14558 ||||| |||| || ||||||||||| | || || |||||||| || || | || Sbjct 297 AACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Query 14559 CA-TGAGAACTTGGAGTACCGTAAGGTGTTCTATGCACTTCTTGACTGGGTCAAACACCT 14617 || ||| || | |||| || || ||||||||| | ||||||||||| |||||||| Sbjct 237 CACCCTAAACCTGCA-TACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCT 179 Query 14618 TCACAACACTCTAAACCAAGGCATTTTAGAGTCATTTTCTGTCACACTTCTCGAAGACCA 14677 || || |||||||| || || | || || || |||||||| | | || || Sbjct 178 ACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGA-TG 120 Query 14678 GTC-TGCTAAGTTCTGGTCGGAAGACTTTTATGCTAATATGTATGAAAAGTCTACAGCAT 14736 ||| | ||| || ||| || || || || || | | | || || |||||||| | | Sbjct 119 GTCAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTT 60 Query 14737 TGCAATCTGCTGGCATGTGTGTTGTTTGTGGCTCTCAAACAGTTTT 14782 ||||| ||||||||||||||||||||||||| || ||||| || || Sbjct 59 TGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTT 14 >seq96645 Length=1578 Score = 468 bits (518), Expect = 9e-128 Identities = 1060/1583 (67%), Gaps = 18/1583 (1%) Strand=Plus/Minus Query 14718 TATGAAAAGTCTACAGCATTGCAATCTGCTGGCATGTGTGTTGTTTGTGGCTCTCAAACA 14777 |||||||||||||| | |||||| ||||||| ||||||||||||||||| || ||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 14778 GTTTTGAGATGTGGTGATTGTATCCGGCGTCCATTGTTGTGTACAAAGTGTGCATATGAC 14837 ||||| | || || || ||| | | | || | | || || ||||| || || ||| Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 14838 CATGTTGTCGGTACACCACACAAGTTTATTTTGTCCATAAGCCCCTATGTCTGCAACCAT 14897 ||||| | |||||| ||||| || ||| |||| || | || ||||| || | | || Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 14898 TCAGGTTGCACTGTAAATGATGTTACAAGGTTGTACCTTGGTGGGTTGTCA-TATTATTG 14956 ||||| ||||| ||||||||||||| |||| |||| ||| | | |||||||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTT-TTGGGAGGTCTTAACTATTATTG 1336 Query 14957 TGTAGACCACAAGCCACAATTGGCATTTCCATTGTGTTCTGCAGGTAATGTGTTTGGTTT 15016 | || ||||| |||||||| |||| || | ||| || ||||||||||||||| | Sbjct 1335 TACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCT 1276 Query 15017 ATACAAAAACTCTGCTACGGGCTCTGTGGATGTTGATGTCTTTAACACCCTTTCAACAAG 15076 ||||| | ||| | || |||| |||||||||| || |||| ||| | Sbjct 1275 GTACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTC 1216 Query 15077 TGATTGGTCAGATGTGCGTGATTATAGGTTGGCTAATGAGTGCAAGGACTCTCTTAGGCT 15136 || ||| | |||| ||||||| | |||||| | || || ||||| | | Sbjct 1215 AGACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAAT 1156 Query 15137 TTTTGCGGCTGAAACCGTTAAGGCCAAAGAGGAATGCATTAAGTCTTCTTACGCTTGTGC 15196 ||| || |||||||| || || || || ||||||| |||| || || |||| ||| Sbjct 1155 TTTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGC 1096 Query 15197 CACGTTGCGTGAAATTATAGGCCCTAAGGAGCTATTGCTCAGTTGGGAACCTGGTAAACC 15256 || || || || | || |||||||| | | ||| |||||| | ||| Sbjct 1095 CATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGAT 1036 Query 15257 GCGGCCGCCTTTAAATCGCAACTCTGTTTTCACTGGTTTTCAGATTACTAAGGATTCTAA 15316 || || | || | || ||||||||||| |||||||||| | |||||| |||| Sbjct 1035 TAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAA 976 Query 15317 GATGCAGTTGGGTGAGTTTACATTTGAGAAACTTGACTATGATAGTGATGCTGTCGTTTA 15376 || ||||| ||||| ||| |||||| | || |||| ||||||| |||| || Sbjct 975 AATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTA 916 Query 15377 CAAGTCTACTACGACTTGCAAACTTAGTCCAGGTGTTCTCTTTGTTCTTACTTCCCACAA 15436 || ||||| ||| || || || ||| | | ||||| | || || || || Sbjct 915 TAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAA 856 Query 15437 TGTAGCACCATTACGTGCACCCACTATGGCTAATCAGGAGAAGTACTCCACTATTGTTAA 15496 ||| ||| | || || | | | || || ||||||||| || || || Sbjct 855 TGTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCAA 796 Query 15497 GCTCAGACCTGTTTTTAACATTAGTGACGCATACGCTAGCCTTATACCGTATTATCAGTT 15556 |||| ||| |||||||| || || || | | | | || || ||||| | Sbjct 795 GCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAAT 736 Query 15557 GATAGGCAAACAACGTATTACTACTATCCAGGGACCACCTGGTAGTGGTAAGTCACATTG 15616 ||| || || ||| |||| |||||||| || || |||||||||||||| |||||||| Sbjct 735 GATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTG 676 Query 15617 TGTTATAGGTTTGGGTTTGTATTATCCTGGTGCACGTATTCTGTACACTGCTTGTTCTCA 15676 |||||||||||||||||||||||||||| || | ||| | ||||| || ||||| || Sbjct 675 TGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACA 616 Query 15677 CGCTGCAGTGGACTCTTTGTGTGCTAAAGCTGCTACTGCTTTCAACACAGACTCTTGTAG 15736 || || ||||| |||| |||| |||||| | | || || || ||| Sbjct 615 TGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTC 556 Query 15737 CCGTATTATACCTGCGCGTGCTCGCGTAGAGTGTTTTTCTGGCTTTAAGGTCAATAACAC 15796 | || |||||| | | || || |||| | || ||||| ||||| || Sbjct 555 AAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATAC 496 Query 15797 TTCAGCACAGTACATCTTTGCTACAGTCAACACAATCCCTGAGATTAATGTTGACATTGT 15856 ||||| || | ||| ||||| || | | ||||| ||| ||||||||| Sbjct 495 CAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGT 436 Query 15857 TGTGTTGGATGAAGTTTCTATGTGCACGAATTATGAGTTGTCA--CTTCTGAATCAACGT 15914 || |||||||||| || ||||| || || ||||| | ||| || | ||| | Sbjct 435 GGTTGTGGATGAAGTGTCAATGTGTACAAACTATGA--TCTCAGTGTTATAAATAGTAGA 378 Query 15915 GTTAGTTATCGTCACGTCGTCTATGTTGGTGACCCACAGCAATTGCCTGCACCCAGAACC 15974 | || || || | || ||||| ||||||||||| ||| | || ||||| |||||| Sbjct 377 CTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACC 318 Query 15975 ATGATTTCAAAGGGTGTTTTGGAACCCAGGGACTACAATGTCGTCACACAGCGTATGTGC 16034 ||||| |||||| | | || |||||||||||| || || ||| | ||||| Sbjct 317 TTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGT 258 Query 16035 GCTGTAGGACCCGATGTGTTTTTACACAAGTGTTATCGTTGTCCTGCTGAAATTGTTAAG 16094 ||||||| ||||| ||||| ||||| ||||| | || || |||||||||||||| Sbjct 257 AAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAA 198 Query 16095 ACTGTTTCAGAGCTTGTTTATGAAAACAAGTTTAAGCCTGTGCATCCTGATAGTAAGGAA 16154 || || || | ||||||||||| || || ||| ||||| | ||||| ||| | Sbjct 197 ACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGCAG 138 Query 16155 TGTTTCAAGCTTTATTGT-AAAGGCTCTGTTCACGTAGA---TAATGGTTCTAGCGTTAA 16210 || || ||| | | |||| |||||| ||||| | || ||| ||||| | || Sbjct 137 TGCTTTAAGATGT-TTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTA---TAAA 82 Query 16211 CAAGCGCCAACTTGATGTTGT--ACGCATGTTTTTGGGCAAGAATCCACGCTGGGCCAAA 16268 ||| ||||| || ||||| | ||| ||||| | | |||||| | ||| ||| Sbjct 81 CAACAAGCAACTAGAGGTTGTCAAGGCA--TTTTTAGCACATAATCCAAGATGGCGTAAA 24 Query 16269 GCAGTCTTTATTTCACCTTATAA 16291 || || || || ||||| ||||| Sbjct 23 GCTGTTTTCATCTCACCCTATAA 1 >seq34658 Length=1229 Score = 82.4 bits (90), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 6256 TGCTCTAAAAGTGCACGCCTCACTCGTATTCCCATTCAAACTGTTGTTAATGGTTCTACT 6315 |||||||||| ||| | | || |||||||| | || ||| ||||||||||| | Sbjct 807 TGCTCTAAAATTGCTAGGCAGACACGTATTCCTGTACAGGTTGTGGTTAATGGTTCAATG 748 Query 6316 AAAGTGGTTTATGTTGCTGCTAATGGT---GGTAACAGACCCTTTTGTAAGAAGCATAAC 6372 || ||||||||| ||||||||| ||||| || || | || |||||||| Sbjct 747 AAGACTGTTTATGTTCAGGCTAATGGTACTGGTAA---ACTCT---GCAAAAAGCATAAT 694 Query 6373 TTCTTTTGTGTGAATTGTGATTCTTATGGTGTTGGCTGCACGTTTATTAATGAGCACGTT 6432 || | |||| ||||||||||||||||| ||| | ||| || ||| ||| | || Sbjct 693 TTTTATTGTAAAAATTGTGATTCTTATGGGTTTGACCACACATTCATTTGTGACGAAATT 634 Query 6433 GCGCGTGAACT 6443 | |||||| || Sbjct 633 GTGCGTGATCT 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 88548869212690