Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_030886.1 Length=30161 Score E Sequences producing significant alignments: (Bits) Value seq139329 185 2e-42 seq96645 109 1e-19 >seq139329 Length=1076 Score = 185 bits (204), Expect = 2e-42 Identities = 567/859 (66%), Gaps = 36/859 (4%) Strand=Plus/Minus Query 14835 AAATTCTATGGTGGCTGGAACCGTATGCTGC-GTACTTTGTGTGATGGTGTAGAGAAACC 14893 |||||||||||||||||| || |||||| | |||| || | | ||| || || Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGC-GATGTGGATAATGG 1016 Query 14894 GCATCTTATGGGTTGGGATTACCCTAAGTGCGATAGAGCTATGCCCAATTTGCTACGCAT 14953 | | ||||| ||||| || || |||||||| | ||| |||| ||| || |||| || Sbjct 1015 TTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAAT 956 Query 14954 CTTTGCTAGCTTAATATTGGCACGTAAACATAGTACGTGTTGCAATACTTCTGAGCGGTT 15013 | || | | |||||| ||| || | | ||||| | | ||| |||| Sbjct 955 GGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 15014 CTACCGTCTTGCTAATGAGTGTGCGCAAGTTCTTAGTGAAATTGTCCTCTGCGGTGGCGG 15073 ||| || || ||||||||| || ||||| || | || |||| | || || || Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 15074 GTTTTATGTTAAGCCTGGTGGAACTAGCAGTGGCGATTCTACTACAGCGTACGCTAATAG 15133 |||||| | || |||||||| || | ||||| || |||||||||||| ||||| Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 15134 TGTGTTTAACATATGTCAAGCTGTGAGTGCCAACCTCAACACATTTTTGTCTAGGGATGG 15193 | |||||||| | ||||||||| ||| || | |||| | || ||| | | Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTT----AGGAGTTG 720 Query 15194 ---CAATAAGATATATAACTCTTAT-GTGCAGGGCTTACAGAGGCGCCTG-TACTTGGGT 15248 ||| | | || | | ||| || ||| | ||||| ||| | || || Sbjct 719 ATTCAAACACCTGTAACAATGTTACAGTTAAGGCCATACAG---CGCAAGATATATGACA 663 Query 15249 ATA--TATCGTACACACACAGTAGACATGGAATTGGTTACGGAGTATTACAACTATCTGC 15306 || || |||| || || || || || || || |||| | ||| | Sbjct 662 ATTGTTACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAA 603 Query 15307 GGAAGCACTTTAGTATGATGATACTCTCAGATGATGGTGTCGTCTGTTATAATTCAGACT 15366 | |||||||| ||||||||| | || ||||||||||| || ||||| || ||| | Sbjct 602 GAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATT 543 Query 15367 ACGCGTCTAAAGGCTATGTTGCTGACATACAGGGCTTTAAAG---AGTTGCTGTACTACC 15423 | || | || ||||| || ||||| | ||||| ||| | | || || || | Sbjct 542 ATGCTGATCTTGGTTATGTAGCAGACATTG-GTGCTTTTAAGGCCACT--CTATATTATC 486 Query 15424 AGAACAATGTCTTTATGTCTGAGGCTAAGTGTTGGGTAGAACCTGATATTACTAAAGGAC 15483 |||||||||| ||||||||| |||||||||||||||||||| ||| ||| | |||| Sbjct 485 AGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGAC 426 Query 15484 CCCATGAGTTTTGTTCGCAGCATACTATGC---TTGT-TGACATGCATGGGGAGCAAGTT 15539 | || || |||||||| || || || | | |||| ||| | |||| || | | Sbjct 425 CACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAG-ATGGTGACTA---T 370 Query 15540 TATTTGCCATACCCGGATCCATCTAGAATACTGGGTGCTGGTTGCTTTGTTGATGACCTG 15599 ||||| || || || || ||||||||||| || || ||| |||||||||||| | Sbjct 369 TATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATT 310 Query 15600 CTTAAAACTGATGGTACGCTTATGATG---GAGCGCTATGTCTCATTGGCAATAGACGCT 15656 |||| || || ||| |||| ||| || || ||||| || | ||||| || || Sbjct 309 GTTAAGACAGA--CAACG-TTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCA 253 Query 15657 TATCCACTCACTAAGCACC 15675 ||||||||||| || |||| Sbjct 252 TATCCACTCACAAAACACC 234 >seq96645 Length=1578 Score = 109 bits (120), Expect = 1e-19 Identities = 396/616 (64%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 15861 GGTACATGTGTTGTTTGCAGCTCACAAACGTCGTTACGATGCGGAGCATGCATACGCAGA 15920 |||| ||||||||||| | |||||||| ||||| ||||||| || || | ||| Sbjct 1544 GGTATGTGTGTTGTTTGTGGTTCACAAACTGTTTTACGTTGCGGAGACTGTTTAAGAAGA 1485 Query 15921 CCTTTTCTGTGCTGTAAGTGTTGTTACGATCACGTTGTGTCTACCACACACAAGCTAGTG 15980 ||| | || ||| ||||| ||||| || || || ||| | ||||| | | Sbjct 1484 CCTCTCCTATGCACGAAGTGCGCCTACGACCATGTCATGGGTACAAAGCACAAATTCATT 1425 Query 15981 TTGTCGGTCACACCGTACGTCTGTAACAACCCAACATGTGATGTAGCTGATGTCACTCAA 16040 |||| |||||||||| || |||| | | ||| ||| |||||| || || Sbjct 1424 ATGTCTATCACACCGTATGTGTGTAGCTATAATGGTTGTACTGTTAATGATGTTACAAAA 1365 Query 16041 TTATACCTTGGTGGCATGTCCTACTATTGTAAGGACCACAAGCCGGTGATATCATTCCCA 16100 || | | || || | ||| ||||||| || ||||| || |||||||||| Sbjct 1364 TTGTTTTTGGGAGGTCTTAACTATTATTGTACTGAGCACAAACCACAATTATCATTCCCG 1305 Query 16101 CTGTGTGCGAATGGCCAGGTTTTTGGTCTGTATAAGAATATTTGTACTGGTAGCAACGAC 16160 || ||||| ||||| | || ||||||||||| |||| || | | |||| | || Sbjct 1304 CTCTGTGCTAATGGTAATGTGTTTGGTCTGTACAAGAGTAGTGCAATTGGTTCTGAAGAT 1245 Query 16161 GTCATAGACTTTAATAGTCTAGCGACTTGCGACTGGTCCAATAGTA-AGGATTATGTGCT 16219 || || || || | || || || |||||| ||||| ||| |||||||| || Sbjct 1244 GTTGATGATTTCAACAAACTTGCTGTTTCAGACTGGACCAAT-GTAGAGGATTATAAACT 1186 Query 16220 TGCAAACACAGCATCTGAACGGCTGAAGTTGTTTGCAGCAGAAACATTACGTGCTACAGA 16279 ||| || | | ||| ||||| | || || || ||||| | || | || Sbjct 1185 TGCTAATAACGTTAAAGAATCTCTGAAAATTTTCGCTGCTGAAACTGTGAAAGCAAAGGA 1126 Query 16280 AGAGAATGCAAAACAGGCATATGCTTCTGCCACAGTTAAAGAGGTTCTAAGTGAACGT-- 16337 || || ||| | |||||||| ||||| | | || |||||| | | || | Sbjct 1125 GGAATCTGTTAAAGCTGAATATGCTTATGCCATATTAAAGGAGGTTGT---CGGACCTAA 1069 Query 16338 -GAACTTGTCCTTTCATGGGAAGTTGGCAAGACGCGACCACCGCTAAACCGTAATTATGT 16396 ||| |||| || ||||||| |||| ||| || || ||| | |||| ||| Sbjct 1068 GGAAGTTGTACTCCAATGGGAATCCTCTAAGATTAAACCTCCACTTAACAGAAATTCTGT 1009 Query 16397 CTTCACTGGGTTTCACATTACTAAGAATAGTAAGATTCAGCTTGGTGAATACATTTTTGA 16456 ||||| | ||||| || | ||| ||| ||| |||||| | ||||||| | ||||| Sbjct 1008 TTTCACATGTTTTCAGATAAACAAGGATACTAAAATTCAGTTAGGTGAATTTGTGTTTGA 949 Query 16457 AAAGGGTGACTATGGT 16472 || || |||||| Sbjct 948 GCAGTCAGAATATGGT 933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96127858207530