Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_032107.1 Length=28363 Score E Sequences producing significant alignments: (Bits) Value seq96645 738 0.0 seq139329 645 0.0 seq92323 161 2e-35 seq132367 125 1e-24 >seq96645 Length=1578 Score = 738 bits (818), Expect = 0.0 Identities = 1114/1582 (70%), Gaps = 16/1582 (1%) Strand=Plus/Minus Query 15205 TATGAAAAGTCTACAGTTTTACAAGCTGCAGGTCTTTGTGTAGTCTGTGGTTCACAAACC 15264 |||||||||||||| || || |||||||| ||| | ||||| || |||||||||||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15265 GTTCTACGTTGTGGTGATTGTCTTCGTAAACCTATGTTATGTACCAAGTGTGCTTATGAC 15324 ||| ||||||| || || ||| | | | |||| | |||| || ||||| || || ||| Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15325 CACGTTTTTGGTACGGACCATAGGTTTATATTGGCTATAACACCGTATGTTTGTAGTGCT 15384 || || | ||||| | || | || || || |||| ||||||||||| ||||| | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15385 TCTGGTTGTGGCGTTAGTGACGTTACTAAGTTATACCTCGGTGGTCTGAATTATTATTGT 15444 ||||||| |||| ||| ||||| || || | | || ||||| || ||||||||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15445 ATAGACCATAAACCCCAGTTGTCATTTCCTTTATGTTCAGCTGGTAACATTTTTGGTTTG 15504 | || || ||||| || || ||||| || | ||| | |||||| | |||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15505 TACAAAAATTCAGCAACAGGTTCTTTGGATGTTGAAGTTTTTAATAAACTGGCCACATCT 15564 ||||| | | |||| |||||| |||||||| | ||| || ||||| || || Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15565 GATTGGACTGATGTCAGGGATTACAAACTTGCTAATGATGTCAAGGACTCACTTAGGCTT 15624 || ||||| |||| |||||| |||||||||||| | || || || || || | || Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15625 TTTGCGGCTGAAACAATCAAAGCTAAGGAGGAAAGTGTTAAATCCTCTTATGCTTTTGCA 15684 || || |||||||| | ||||| ||||||||| ||||||| | ||||||| ||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15685 ACTCTCAAAGAGATTGTTGGACCTAAAGAACTGCTACTTAGTTGGGAAAGCGGTAAAGTG 15744 | | || ||| |||| |||||||| ||| | |||| |||||| | ||| | Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATT 1035 Query 15745 AAACCACCATTGAATCGCAATTCTGTTTTTACTTGTTTTCAAATAAGTAAAGATTCCAAG 15804 ||||| ||| | || | ||||||||||| || |||||||| |||| || ||| | || Sbjct 1034 AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAA 975 Query 15805 TTTCAAATTGGTGAGTTCATTTTTGAAAAGGTTGATTATGGTTCTGACACTGTTACGTAT 15864 |||| | ||||| || | ||||| || || |||||| ||| ||||| ||| Sbjct 974 ATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTAT 915 Query 15865 AAATCTACTGCCACCACTAAGTTGGTGCCTGGTATGATTTTTATCTTAACGTCACATAAT 15924 ||| |||| ||| |||||| ||| || |||||||||||| | || || || |||||| Sbjct 914 AAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAAT 855 Query 15925 GTACAACC--TTTACGTGCCCCAACTATT--GCCAATCAAGAGAGGTACTCTAATATTTA 15980 || || || | | | ||| || | ||| ||||||| |||| || || | Sbjct 854 GTGAGTCCACTTAAAG----CTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATC 799 Query 15981 CAAGTTGCATCCTGCTTTTAATATTAGTGATGCATATGCAAGTTTAGTTCCGTACTATCA 16040 |||| | ||||| | ||||| || || || ||| | | || || || |||||||| Sbjct 798 CAAGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCA 739 Query 16041 ACTTATTGGCAAGCAAAGAATAACAACAATTCAGGGCCCACCTGGTAGTGGCAAATCACA 16100 | | || || ||||||| | | ||||| || || || || ||||||||||| |||||||| Sbjct 738 AATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACA 679 Query 16101 CTGTTCTATTGGACTAGGTTTGTACTATCCAGGTGCGCGTATAGTTTTCACTGCATGTGC 16160 ||| ||| || | |||||||| ||||| || | || |||| ||| |||||| | Sbjct 678 TTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTC 619 Query 16161 CCATGCTGCTGTTGACTCCTTGTGTGCCAAGGCTGCAACGGCTTATAGTGTGGACAAGTG 16220 ||||| ||||| || | || |||| || ||| | | | | || ||| || || || Sbjct 618 ACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATG 559 Query 16221 CACTAGAATTATACCTGCACGGGCTCGG-GTGGAATGTTATAGTGGTTTCAAACCCAATA 16279 | || || |||||| || | || | || || ||||||| ||||| ||||| |||| Sbjct 558 TTCAAGGATAATACCT-CAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATA 500 Query 16280 ACACTAGTGCACAGTACATTTTTAGTACTGTTAATGCACTACCTGAGTGTAATGCTGATA 16339 | || | |||||| || | ||| | || |||||||| | ||||| ||| ||| | Sbjct 499 ATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACA 440 Query 16340 TTNNNNNNNNNNNNNNAGTGTCTATGTGTACAAATTATGATCTTTCTGTTATTAATCAGC 16399 || |||||| ||||||||||| |||||||| |||||| ||| Sbjct 439 TTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTA 380 Query 16400 GTCTCTCTTATAAGCATATTGTTTATGTTGGAGACCCGCAGCAACTTCCTGCGCCACGAG 16459 | || || || |||||||||||||| || ||||| || |||||||| || || || Sbjct 379 GACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAA 320 Query 16460 TAATGATTACTAAAGGCGTTATGGAACCTGCAGATTATAATGTTGTTACACAACGCATGT 16519 |||||| ||| || | | |||| || || |||||||| || || | |||| Sbjct 319 CCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGT 260 Query 16520 GTGCTATAGGTCCTGATGTGTTCTTACACAAATGTTATAGGTGCCCAGCTGAAATTGTTA 16579 || |||| |||||||| || || ||||||||||| || ||||||||||||||||||| Sbjct 259 GTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTA 200 Query 16580 ACACAGTTTCTGAACTTGTTTATGAGAACAAATTTGTCCCTGTCAAGCCTGACAGCAAAC 16639 | ||||| |||| |||||||||||||| |||||| | |||||||| ||||| || | Sbjct 199 AAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCAAAGC 140 Query 16640 AGTGCTTTAAAATTTTCGTCAAGGGTAATGTACAGGTTGA---TAATGGTTCTAGCATAA 16696 |||||||||| || || || || || | || ||| |||| ||| |||| |||| Sbjct 139 AGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCT---ATAA 83 Query 16697 ACAGAAAACAACTTGATATAGTTAAGCTATTCTTAGCCAAAAACCCAAGTTGGAATAAGG 16756 ||| || ||||| || | || ||| ||| ||||| | || ||||| ||| ||| | Sbjct 82 ACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTAAAG 23 Query 16757 CTGTGTTTATTTCACCATATAA 16778 |||| || || ||||| ||||| Sbjct 22 CTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 645 bits (714), Expect = 0.0 Identities = 791/1075 (74%), Gaps = 4/1075 (0%) Strand=Plus/Minus Query 14209 AAATTTTATGGTGGCTGGGACAATATGTTGCGTACTTTGATGGACGGTGTTGAAAATCCT 14268 ||||| ||||||||||||||||||||| | | |||||| || ||| || ||| | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14269 ATGCTT-ATGGGTTGGGACTATCCAAAATGTGATAGAGCCTTACCTAATATGATACGTAT 14327 || || ||||| |||||||||||||| || || | || || |||||||||||||| || Sbjct 1014 -TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAAT 956 Query 14328 GATTTCAGCTATGGTGTTAGGTTCTAAGCATGTCAGTTGTTGCACTTCAACAGACAGGTT 14387 | ||| || ||||| || ||||||||||| | ||||||| || | || ||||| Sbjct 955 GGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 14388 TTACAGACTTAGCAATGAATTGGCACAAGTTTTGACTGAGGTTGTATACTCCAATGGCGG 14447 || |||| ||||| || || ||||| | || ||||||||| | | | || || Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 14448 TTTTTATTTTAAACCTGGTGGTACAACTTCGGGTGATGCTAGTACTGCTTATGCTAACTC 14507 |||||| | |||||||||||||||||| ||||| | || ||| || ||||||||||| Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 14508 TGTATTTAACATTTTTCAAGCTGTAAGTTCCAACATTAATCGTTTATTAAGTGTTCCTTC 14567 | |||||||| ||||||||||| | | || |||| | ||| | ||| ||| Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTC 716 Query 14568 GGACTCTTGTAACAATATTAATGTTAGAGATTTGCAGCGTCGTTTATATGATAACTGTTA 14627 || | ||||||||| ||| |||| | | ||||| ||||||| || ||||| Sbjct 715 AAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTTA 656 Query 14628 CAGGTCAACTAATGTTGATGAATCATTTGTTGATGATTATTATGGTTATCTTAGGAAACA 14687 | | | | ||| ||||| ||||| | || |||| | ||||| | || || || Sbjct 655 CCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGCA 596 Query 14688 TTTTTCTATGATGATACTGTCTGATGATGGTGTTGTTTGTTACAACAAGGATTATGCTGA 14747 || ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| Sbjct 595 CTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGA 536 Query 14748 ACTTGGTTATATAGCTGACATTAGTGCCTTCAAAGCCACATTGTACTACCAGAACAATGT 14807 ||||||||| |||| |||||| |||| || || ||||| | || || ||||||||||| Sbjct 535 TCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATGT 476 Query 14808 TTTCATGAGTACTTCCAAGTGTTGGGTTGAGGAAGACCTAACCAAAGGACCCCATGAATT 14867 || ||| ||| | ||||||||||| || ||| || | ||||| || ||||| Sbjct 475 GTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATT 416 Query 14868 TTGTTCTCAACATACCATGCAAATAGT-GGACAAAGAGGGTACCTATTATTTGCCTTACC 14926 |||||| ||||| || | ||||| || |||| | || ||| ||||||||| ||||| | Sbjct 415 TTGTTCACAACACACATTACAAATTGTAGGACCA-GATGGTGACTATTATTTACCTTATC 357 Query 14927 CTGATCCTAGTAGGATTTTGTCAGCAGGTGTCTTTGTTGATGATGTAGTTAAAACTGACG 14986 | || || ||| ||||||||||||||||| ||||||||||| | ||||| || ||| Sbjct 356 CAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACA 297 Query 14987 CTGTCATTTTGCTAGAACGTTATGTCTCTTTGGCTATTGATGCTTACCCCTTGTCCAAGC 15046 || || |||| ||||||||||| || | || |||||||| || || | | || | Sbjct 296 ACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAAC 237 Query 15047 ATCCAAACCCTGAATACCGTAAAGTATTCTATGTGTTGCTGGACTGGGTTAAACATCTTA 15106 | || || |||| ||||| ||||||||||||| ||||| |||||||||||||| || Sbjct 236 ACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTAC 177 Query 15107 ACAAAACTTTAAATGAGGGGGTCTTAGAGTCGTTTTCTGTTACACTCTTAGACAACCAAG 15166 | || ||| |||||| || | | || || || ||||| || | ||||| | Sbjct 176 AGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGTC 117 Query 15167 AGGACAAGTTTTGGAGTGAAGAGTTTTACGCTAGTATGTATGAAAAGTCTACAGTTTTAC 15226 | || || ||||||||||| ||||| ||||| ||| | || || |||||||| ||||| | Sbjct 116 AAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTTTGC 57 Query 15227 AAGCTGCAGGTCTTTGTGTAGTCTGTGGTTCACAAACCGTTCTACGTTGTGGTGA 15281 ||||||| || | ||||| || |||||||||||||| || ||||||| || || Sbjct 56 AAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq92323 Length=1240 Score = 161 bits (178), Expect = 2e-35 Identities = 529/808 (65%), Gaps = 17/808 (2%) Strand=Plus/Minus Query 23754 GGTAGACTTGCCGCGCTCAATTCTTTTGTTACTCAAACTCTTACTAGACAAACTCAGGTT 23813 |||||| | || || || ||| ||| ||| ||||||| | ||| | || | || Sbjct 1240 GGTAGATTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTC 1181 Query 23814 AGGGCTAGTAGAGAACTTGCTATGCAAAAAATTAATGAGTGTGTCAAATCACAGTCTGAC 23873 | ||||||||| ||||||| ||| ||||| ||||||||||||| ||||||||||| || Sbjct 1180 AAGGCTAGTAGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGAT 1121 Query 23874 AGGTATGGTTTTTGTGGTAATGGAACACATTTGTTTTCTATAGCCAATGCCGCACCTGAA 23933 |||||||| || ||||| ||||||||||| | || || | | |||| | |||||||| Sbjct 1120 AGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGAT 1061 Query 23934 GGGCTTCTGTTTTTGCACACAGTTTTAGTCCCTGACGACTATGTCACTGTTGAAGCTTGG 23993 || || || || || ||||||||||| | ||| || | | || || ||| Sbjct 1060 GGTCTACTTTTCTTTCACACAGTTTTGCTTCCTACAGAATGGGAAGAAGTGACGGCATGG 1001 Query 23994 TCAGGCATCTGTTTTGGTGGTGATAAAGGTTTTATTCTCAGAGATTTTCAACTTACTTTG 24053 ||||| || ||| | || | | | | | | | | ||| ||| | | | || | Sbjct 1000 TCAGGAATATGTGTCAATGACACTTATGCATATGTGTTGAAAGACTTTGATCATTCTATT 941 Query 24054 ATAAAGTATGATAATAAATATAAAGTCACTTCTCGCAAGATGTTCCAACCCAGGAATGCT 24113 | | ||| || || |||| || ||| |||| || ||||| ||||| || || || Sbjct 940 TTCAGTTATAATGGTACGTATATGGTGACTCCTCGTAATATGTTTCAACCTAGAAAACCT 881 Query 24114 GAAATTAGTGACTTCATACAAATTTCCAATTGTGACGTTCAATTTCTCAACTTGACACAA 24173 | || ||||| ||| | |||||| | | |||||| || |||||| ||| ||| | Sbjct 880 CAGATGAGTGATTTCGTGCAAATTACGAGTTGTGAAGTGACATTTCTGAACACTACATAT 821 Query 24174 GATCAAGTTCAAGATGTCATACCTGAGTATGTTGACGTCAATAAAACT-TTG-GAAGAAG 24231 | |||| ||| | | ||| ||| ||||| | || || ||| ||| | | | Sbjct 820 ACGACATTTCAGGATATTGTGATTGATTATATTGACATTAACAAGACTATTGCTGATATG 761 Query 24232 CTTTATCTAAGTTGCC-TAATTATACCAAACCTG-ATTTGAGT-----CTTGATGTTTTT 24284 ||| | | | | || |||||| || | ||||| ||| || | || || |||| Sbjct 760 CTTGAACAATATAACCGTAATTACACAACACCTGAATTAGATTTACAGCTGGAAATTTTC 701 Query 24285 AATCAAACCTATCTTAACCTTTCGTCTGAAATTGATCAATTGGAACAAAAGGCTGAGAGT 24344 || || || | ||||| | | ||||| || ||| | ||||| | || || | Sbjct 700 AACCAGACAAGGTTAAACCTAACTGCAGAAATAGACCAACTCGAACACAGAGCAGACAAC 641 Query 24345 TTGACCAACACTACCATCA--AACTTCAAAGTTTGATTGACCAAATTAACAGTACTCTTG 24402 | || | | || || || |||| || | |||||| | |||| | || |||| Sbjct 640 CTTACTATTA-TAGCA-CATGAACTACAGCAGTACATTGACAATCTTAATAAGACGCTTG 583 Query 24403 TTGATTTGGAGTGGCTTAATCGTGTTGAAAATTACATCAAGTGGCCCTGGTGGGTTTGGC 24462 |||| | || ||||| || | |||||| ||| | || ||||| |||| || |||| Sbjct 582 TTGACCTTGAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCTTGGTATGTATGGC 523 Query 24463 TTATTATCGCTGTTGTTCTCATTTTTGTTGTGAGTCTTCTTA-TGTTTTGCTGTAT-AGC 24520 | | || | | | || | | | || | | || ||| ||||||||||| | ||| Sbjct 522 TATTAATTGGTTTAGTAGT-AGTCTTCTGCATACCATTGTTACTGTTTTGCTGTCTGAGC 464 Query 24521 TACGGGTGGTTGTGGTTGCTGTAGTTGT 24548 || ||| | ||||| |||| | ||||| Sbjct 463 -ACTGGTTGCTGTGGATGCTTTGGTTGT 437 >seq132367 Length=1893 Score = 125 bits (138), Expect = 1e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 23816 GGCTAGTAGAGAACTTGCTATGCAAAAAATTAATGAGTGTGTCAAATCACAGTCTGACAG 23875 ||||||||| |||| || ||| ||||| ||||||| || || |||||||| || || || Sbjct 44 GGCTAGTAGGCAACTGGCAATGGAAAAAGTTAATGAATGCGTGAAATCACAATCGGATAG 103 Query 23876 GTATGGTTTTTGTGGTAATGGAACACATTTGTTTTCTATAGCCAATGCCGCACCTGAAGG 23935 ||||||||||||||| ||||||||||| |||| || | | |||| | |||||||| || Sbjct 104 GTATGGTTTTTGTGGAAATGGAACACACCTGTTCTCACTTGTCAATTCTGCACCTGATGG 163 Query 23936 GCTTCTGTTTTTGCACACAGTT 23957 | || || || ||||||||| Sbjct 164 TTTGCTCTTCTTTCACACAGTT 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90399887166390