Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_032730.1 Length=28763 Score E Sequences producing significant alignments: (Bits) Value seq139329 544 1e-150 seq96645 504 1e-138 >seq139329 Length=1076 Score = 544 bits (602), Expect = 1e-150 Identities = 762/1074 (71%), Gaps = 2/1074 (0%) Strand=Plus/Minus Query 14266 AAGTTTTATGGTGGTTGGGACAATATGCTTCGCACACTTATTGAT-GATGTTGAGAATCC 14324 || || |||||||| |||||||||||||| | |||| || ||||| || ||| Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGA-ACTTGATGCGCGATGTGGATAATGG 1016 Query 14325 ATGTCTCATGGGTTGGGACTATCCCAAGTGTGATCGTGCCCTACCTAATATGATTCGCAT 14384 ||| | ||||| ||||||||||| ||||| || ||||| | ||||||||||| || || Sbjct 1015 TTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAAT 956 Query 14385 GGCTTCCGCTATGCTTCTTGGTTCTAAGCATGTTAGCTGCTGTTCTAATATGGATAAGTT 14444 |||||| || ||| | | ||||||||||| || | || ||| | ||| |||| ||| Sbjct 955 GGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 14445 TTATCGTCTGTCAAATGAATTGGCACAGGTTTTGACCGAAGTCGTCCATTCTAATGGTGG 14504 ||||| || || ||||| || || || || | || || || || |||| || ||||| Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 14505 CTTCTATTTTAAACCTGGCGGCACTACATCTGGTGATGCTAGTACTGCTTATGCCAACTC 14564 ||| ||| | |||||||| || || || |||||| | || ||| || ||||| ||||| Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 14565 TGTTTTCAATATTTTTCAGGCTGTTAGTGCTAATGTAAATAAATTGCTTGCTGTTGATAG 14624 | ||| || || ||||| |||||| ||||||||| || || | | | |||||| Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTC 716 Query 14625 TAATGTTTGTAGGAACATTGCTGTCAAGGAATTACAACGTGCAATTTATGATAATTGCTA 14684 || |||| || || | || |||| |||| || || ||||| ||||| || Sbjct 715 AAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTTA 656 Query 14685 CCGTACTTCCTCTATTAGTGAGGAATGCGTTGACAACTTTTATCATTATTTACGTAAGCA 14744 ||||| | | | | ||| || | || | | | | || | ||||||| | ||||| Sbjct 655 CCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGCA 596 Query 14745 CTTTTCTATGATGATTTTATCTGATGATGGTGTTGTGTGTTATAATAAGGAGTATGCAGA 14804 ||| |||||||||||||| |||||||||||||| || ||||| || || || ||||| || Sbjct 595 CTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGA 536 Query 14805 TTTAGGTTATGTCGCAGACATAAACGCATTTAAGGCTACTCTCTATTACCAGAATAATGT 14864 | | |||||||| |||||||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 535 TCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATGT 476 Query 14865 GTTTATGAGTACCTCCAAATGCTGGGTAGAACCAGACATTAATGTAGGACCTCATGAATT 14924 ||||||| ||| | || || |||||||||||||| ||||||| ||||| || ||||| Sbjct 475 GTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATT 416 Query 14925 TTGCTCACAGCACACTTTGCAAATTATAGATGGTGATGGTAAGTATTACTTACCATATCC 14984 ||| ||||| ||||| || |||||| ||| |||||| | ||||| ||||| ||||| Sbjct 415 TTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTATCC 356 Query 14985 AGATCCTAGCCGCATTTTAAGTGCTGGNNNNNNNNNNNNNNNNNNNNNNNAGACAGATGG 15044 ||| || | ||||| || || ||||||| Sbjct 355 AGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACAA 296 Query 15045 CGTTGTTTTACTTGAACGCTATGTGTCTCTTGCTATTGATGCTTATCCTCTTTCTAAGCA 15104 |||| | | |||||||| |||||||| || || |||||||| ||||| || | || || Sbjct 295 CGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAACA 236 Query 15105 TGGTAATCCTGAGTATAGAAAGGTATTCTATACTATGCTTGAATGGGTGAAAAAGCTTAG 15164 ||| |||| || ||| ||||||||| | ||||||| ||||| ||| | || Sbjct 235 CCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTACA 176 Query 15165 TAATGATTTGAATAAAGGAGTTTTGGATGCCTTTGCCATCACAATGTTAGAGGATACTCA 15224 || | | ||| || | | ||| |||| | |||| |||||||||||| ||| Sbjct 175 GAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGTCA 116 Query 15225 AGCCAAGTTTTGGAGTGAAGAATTCTATGCTAGTCTCTATGAAAAGTCTAGCGTACTTCA 15284 || || ||||||||||| || ||||| || ||||| || || ||||||| || | || Sbjct 115 AGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTTTGCA 56 Query 15285 ATCTGCTGGACTTTGTGTTGTCTGTCAATCACAAACAGTCTTACGCTGCGGGGA 15338 | ||||||| | |||||||| ||| |||||||| || ||||| ||||| || Sbjct 55 AGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq96645 Length=1578 Score = 504 bits (558), Expect = 1e-138 Identities = 1070/1585 (68%), Gaps = 14/1585 (1%) Strand=Plus/Minus Query 15258 TCTCTATGAAAAGTCTAGCGTACTTCAATCTGCTGGACTTTGTGTTGTCTGTCAATCACA 15317 ||| ||||||||||||| || | ||| ||||||| | |||||||| ||| ||||| Sbjct 1578 TCTTTATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACA 1519 Query 15318 AACAGTCTTACGCTGCGGGGATTGTCTTAGACGTCCTCTACTGTGTACTAAGTGTGCATA 15377 ||| || ||||| ||||| || ||| | ||| | ||||| || || || ||||| || || Sbjct 1518 AACTGTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTA 1459 Query 15378 TGATCATGTGATGGGAACGCATCATAAGTTTATTATGGCTGTTACACCTTATGTTTGTTG 15437 || ||||| ||||| || | || || || |||||| || | ||||| ||||| ||| | Sbjct 1458 CGACCATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAG 1399 Query 15438 TCATGCTGGTTGCAATGTTAATGATGTTACCAAGCTTTATCTTGGTGGCATGAGCTTCTA 15497 || |||||| | ||||||||||||||| || | | | | || || | | || || Sbjct 1398 CTATAATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTA 1339 Query 15498 TTGTGTAGACCATCGGCCTAAATTATCCTTTGCGCTCTGCTCAAATGGTAATGTTTTTGG 15557 |||| || || || ||||||| || ||||||| | ||||||||||| ||||| Sbjct 1338 TTGTACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGG 1279 Query 15558 TCTATACAAGGCTATGGCAACTGGTTCTGATGAAGTCTTTGACTTCAATCGTTTGGCAAC 15617 ||| |||||| || |||| ||||||||| || || ||| ||||| | || Sbjct 1278 TCTGTACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGT 1219 Query 15618 AACTGACTGGTCAAATGTAGATGTCTACAAGTTGGCCAACACCTGTTCTAACAGC-CTCA 15676 | |||||| | |||||||| | || || | || || | | ||| | | | || | Sbjct 1218 TTCAGACTGGACCAATGTAGAGGATTATAAACTTGCTAATAAC-GTTAAAGAATCTCTGA 1160 Query 15677 AACTTTTTGCCGCCGAAACTGTTAAAGCTAAAGAGGAGAGCGTAAAATCCTCTTATGCTA 15736 || |||| || || |||||||| ||||| || ||||| || ||| | |||||| Sbjct 1159 AAATTTTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTT 1100 Query 15737 TTGCCACACTTAAAGAGATTGTTGGCAATAGAGAAATTGTTTTACAGTGGGAAGCATCCA 15796 ||||| | | || ||| |||| || || ||| |||| | || |||||| | || | Sbjct 1099 ATGCCATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTA 1040 Query 15797 AAACTAAGCCTCCTCTTAACCGTAACTCTGTTTTTACAGGTTACTATATTAATAAGGACG 15856 | | ||| ||||| |||||| | || |||||||| ||| ||| | || || ||||| Sbjct 1039 AGATTAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATA 980 Query 15857 CTAAGTTTCAAATGGGTGAGTATACTTTTGAGAAATCTGATTATGGTAATGATAGCGTGT 15916 |||| |||| | ||||| | | |||||| | || || ||||||| |||| || | Sbjct 979 CTAAAATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTT 920 Query 15917 TTTATAAGGCTAACACTACCACAAAGTTAATTCCGGGGATGATTTTTGTGCTCACTTCAC 15976 ||||| || | || || ||| | ||||| |||||||||||| | || || | Sbjct 919 ACTATAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTC 860 Query 15977 ATAATGTAGCACCTCTCCGAGC--ACCTGTTATTGTCAACCAGGAACGTTACACCTCGAT 16034 ||||||| || || ||| || | ||| |||||||| || |||| | || Sbjct 859 ATAATGTGAGTCCACTTAAAGCTAACATTTTA--GTCAACCAAGAGAAGTACAATACCAT 802 Query 16035 CTGTAAGTTGTATCCATCATTTTACATTGACCCAGCTTATAGTTCACTTGTCCCCCATTA 16094 | ||| | ||||| | ||| |||| | ||| |||| || | || || | || Sbjct 801 ATCCAAGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTA 742 Query 16095 TCAGTTGATAGGGCGACAGAAGATTACCACAATCCAGGGACCTCCGGGTAGTGGTAAGTC 16154 ||| |||| || || || |||| || ||||| || ||||| ||||||||||| || Sbjct 741 TCAAATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATC 682 Query 16155 TCATACAATGGTCGGCCTTGGTTTGTACTACCCTTCAGCGCGAGTTCTCTTTACTGCTTG 16214 ||| | | || | |||||||| || ||| ||| || || | | || || || Sbjct 681 ACATTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATG 622 Query 16215 CTCTCACGCTGCTGTAGATTCACTGTGTGTAAAAGCGGCTAAGACATTCGCGCATGAGAA 16274 || || || ||||| ||| | | |||| |||||| | |||| || ||| || Sbjct 621 TTCACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAA 562 Query 16275 GTGTACTAGGATAGTTCCTGCTAAG-GCCAGGGTCGAGTGTTATTCTGGTTTTAAGGTGA 16333 ||| | |||||| | ||| | ||| ||| || || |||||| |||||||| | Sbjct 561 ATGTTCAAGGATAATACCT-CAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTA 503 Query 16334 ATAATAATGGCGCTCAATATGTATTTAGCACCATTAATGCACTTCCGGAA-ATATCAGTC 16392 |||||| || |||||| | ||| |||| ||||||| | || ||| || | || Sbjct 502 ATAATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGT- 444 Query 16393 GATCTGGTTGTTGTTGATGAGGTTTCCATGTGTACTAACTATGATTTGTCTGTACTCAAT 16452 || | || ||||| ||||| || || |||||||| ||||||||| | ||| | ||| Sbjct 443 GACATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAAT 384 Query 16453 TCACGAGTTGCATACAGGCACATAGTTTATGTCGGTGATCCTCAGCAATTACCAGCCCCA 16512 || | |||| || || |||||||| ||||| || || ||| | ||||| || Sbjct 383 AGTAGACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCT 324 Query 16513 CGTACCCTAATTACTAAAGGTGCTTTGGAACCCGCTGATTATAATGTTGTCACACGCCTA 16572 | ||| | |||| ||| ||| | | | || | || || |||||||| || | Sbjct 323 AGAACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGG 264 Query 16573 ATGTGCACCATCGGCCCAGATGTGTTCTTGAATAAGTGCTATAGGTGTCCAGCGGAAGTT 16632 ||||| | | || || ||||| || ||| | || || || || || ||||| ||| || Sbjct 263 ATGTGTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATT 204 Query 16633 GTTAATAGTGTTTCATCCCTTGTTTATGAAGATAAGTTTAAACCTGTGAACCCTTTAAGT 16692 ||||| | || || | ||||||||||| |||| ||| |||||| ||||| | ||| Sbjct 203 GTTAAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCC--TGAGT 146 Query 16693 --AATTTGTGCTTCAAATTGCTATTTAAAGGAGCTGTTCACCATGACTCTGGTTCTTGTG 16750 || |||||| || || | | ||||| ||||| ||| ||| |||| | Sbjct 145 CAAAGCAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTA 86 Query 16751 TTAATAGAAAGCAACTCGATATTGTAAAGCAATTTCTGGCTCGCAACCCTGATTGGTCTA 16810 | || | |||||||| || |||| ||| |||| | || | || || ||| || Sbjct 85 TAAACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTA 26 Query 16811 AGGCTGTTTTTATCTCACCTTATAA 16835 | |||||||| |||||||| ||||| Sbjct 25 AAGCTGTTTTCATCTCACCCTATAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 91666591209750